Wall clock time and date at job start Mon Mar 30 2020 07:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35701 * 117.00213 * 2 1 4 4 C 1.39196 * 119.85541 * 359.97438 * 3 2 1 5 5 C 1.36519 * 120.37401 * 180.02562 * 4 3 2 6 6 C 1.39903 * 120.08707 * 0.02562 * 5 4 3 7 7 C 1.47150 * 120.14442 * 179.97438 * 6 5 4 8 8 O 1.21541 * 120.00159 * 180.02562 * 7 6 5 9 9 O 1.34792 * 119.99924 * 0.02562 * 7 6 5 10 10 C 1.40385 * 119.71678 * 359.97438 * 6 5 4 11 11 O 1.35644 * 120.18574 * 180.02562 * 10 6 5 12 12 C 1.42903 * 116.99549 * 180.02562 * 11 10 6 13 13 C 1.53000 * 109.46726 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46735 * 180.02562 * 13 12 11 15 15 H 1.07996 * 119.99928 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99611 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99711 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00219 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.46794 * 90.00022 * 18 16 14 20 20 H 1.48502 * 109.47140 * 210.00005 * 18 16 14 21 21 H 1.48501 * 109.46982 * 330.00118 * 18 16 14 22 22 C 1.38474 * 119.62602 * 0.27218 * 10 6 5 23 23 H 1.09000 * 109.47141 * 300.00144 * 1 2 3 24 24 H 1.09002 * 109.47093 * 59.99855 * 1 2 3 25 25 H 1.09003 * 109.47364 * 179.97438 * 1 2 3 26 26 H 1.08003 * 119.81008 * 0.02821 * 4 3 2 27 27 H 1.08004 * 119.95827 * 179.97438 * 5 4 3 28 28 H 0.96695 * 116.99968 * 179.97438 * 9 7 6 29 29 H 1.09002 * 109.47382 * 59.99849 * 12 11 10 30 30 H 1.09001 * 109.46938 * 299.99835 * 12 11 10 31 31 H 1.09001 * 109.47194 * 299.99575 * 13 12 11 32 32 H 1.08992 * 109.47399 * 59.99748 * 13 12 11 33 33 H 0.97000 * 119.99684 * 179.97438 * 17 16 14 34 34 H 1.07990 * 120.04516 * 179.72489 * 22 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2841 2.3746 -0.0005 5 6 1.8929 3.5965 -0.0011 6 6 3.2892 3.6845 -0.0016 7 6 3.9467 5.0009 -0.0028 8 8 5.1599 5.0743 -0.0037 9 8 3.2035 6.1254 -0.0028 10 6 4.0603 2.5114 -0.0011 11 8 5.4147 2.5856 -0.0011 12 6 6.1321 1.3496 -0.0011 13 6 7.6356 1.6327 -0.0004 14 6 8.3921 0.3293 -0.0011 15 1 7.8543 -0.6072 -0.0014 16 6 9.7709 0.3325 -0.0012 17 7 10.4311 -0.8049 -0.0012 18 14 10.7012 1.9524 -0.0013 19 1 10.9478 2.3816 1.3988 20 1 11.9991 1.7778 -0.7014 21 1 9.8962 2.9855 -0.7012 22 6 3.4305 1.2782 -0.0057 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 0.2059 2.3118 -0.0005 27 1 1.2959 4.4966 -0.0019 28 1 3.6802 6.9667 -0.0032 29 1 5.8700 0.7774 -0.8910 30 1 5.8700 0.7775 0.8889 31 1 7.8980 2.2050 -0.8902 32 1 7.8973 2.2047 0.8897 33 1 11.4011 -0.8027 -0.0017 34 1 4.0171 0.3715 -0.0098 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042313320.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:39 Heat of formation + Delta-G solvation = -168.827279 kcal Electronic energy + Delta-G solvation = -19631.869703 eV Core-core repulsion = 16301.604845 eV Total energy + Delta-G solvation = -3330.264858 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.89521 -40.66550 -40.05352 -37.64337 -36.89841 -35.42900 -32.91186 -32.15452 -30.85742 -28.31066 -27.23832 -25.12990 -23.93910 -22.41000 -22.00212 -19.95972 -19.05170 -18.94155 -18.07048 -17.48286 -17.30333 -17.16452 -16.63582 -16.41323 -16.32634 -15.71216 -15.41775 -14.77277 -14.50002 -14.43435 -14.06384 -13.60573 -13.31818 -13.23798 -12.97560 -12.73148 -12.48918 -12.22651 -12.07378 -12.00471 -11.83326 -11.58143 -11.52552 -11.42318 -10.84178 -9.76678 -9.29271 -8.37815 -6.44057 -0.28548 0.29901 1.32843 1.34153 1.48443 1.57625 2.03400 2.12207 2.30789 2.31701 2.66838 2.97083 3.63280 3.92778 3.97366 4.08319 4.15341 4.21280 4.35682 4.41628 4.45505 4.57891 4.62311 4.78985 5.00177 5.04667 5.13577 5.21681 5.24871 5.40524 5.51169 5.68340 6.13012 6.22187 6.34117 6.60847 7.10844 7.21268 8.77787 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.018475 B = 0.005215 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.197317 B = 5367.520311 C = 6856.968551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.329 6.329 3 C 0.207 3.793 4 C -0.249 4.249 5 C 0.031 3.969 6 C -0.233 4.233 7 C 0.529 3.471 8 O -0.546 6.546 9 O -0.503 6.503 10 C 0.212 3.788 11 O -0.304 6.304 12 C 0.078 3.922 13 C -0.004 4.004 14 C -0.536 4.536 15 H 0.047 0.953 16 C 0.019 3.981 17 N -0.939 5.939 18 Si 0.944 3.056 19 H -0.265 1.265 20 H -0.274 1.274 21 H -0.258 1.258 22 C -0.281 4.281 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.119 0.881 26 H 0.179 0.821 27 H 0.179 0.821 28 H 0.430 0.570 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.023 0.977 32 H 0.022 0.978 33 H 0.271 0.729 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.602 9.819 0.011 27.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.241 6.241 3 C 0.160 3.840 4 C -0.267 4.267 5 C 0.013 3.987 6 C -0.235 4.235 7 C 0.375 3.625 8 O -0.437 6.437 9 O -0.317 6.317 10 C 0.163 3.837 11 O -0.216 6.216 12 C 0.004 3.996 13 C -0.041 4.041 14 C -0.573 4.573 15 H 0.065 0.935 16 C -0.179 4.179 17 N -0.579 5.579 18 Si 0.767 3.233 19 H -0.189 1.189 20 H -0.199 1.199 21 H -0.183 1.183 22 C -0.301 4.301 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.137 0.863 26 H 0.196 0.804 27 H 0.196 0.804 28 H 0.291 0.709 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.080 0.920 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -25.099 9.347 0.008 26.783 hybrid contribution 1.254 0.491 0.015 1.347 sum -23.845 9.838 0.024 25.794 Atomic orbital electron populations 1.23562 0.75080 1.06160 1.03408 1.86074 1.24726 1.26544 1.86737 1.19093 0.90814 0.85663 0.88447 1.21237 1.02256 0.90388 1.12865 1.21105 0.90354 0.99668 0.87583 1.18485 0.94460 0.87599 1.22989 1.20612 0.84533 0.85378 0.71943 1.90987 1.16935 1.88140 1.47679 1.84464 1.43921 1.17432 1.85864 1.19095 0.82988 0.92925 0.88708 1.86311 1.15027 1.34493 1.85742 1.22865 0.92181 0.83232 1.01315 1.19406 0.90582 0.96575 0.97549 1.21080 0.92033 0.92205 1.52024 0.93516 1.25779 0.98478 1.00054 0.93616 1.70008 1.08511 1.27876 1.51468 0.85754 0.78142 0.79963 0.79448 1.18946 1.19926 1.18260 1.20457 0.94174 0.97049 1.18379 0.90426 0.90435 0.86314 0.80419 0.80356 0.70919 0.91682 0.91666 0.95895 0.95972 0.91986 0.84604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.80 113.37 1.11 1.22 16 2 O -0.33 -6.99 10.48 -90.21 -0.95 -7.94 16 3 C 0.21 4.96 6.69 22.61 0.15 5.11 16 4 C -0.25 -4.27 8.96 22.10 0.20 -4.07 16 5 C 0.03 0.59 9.55 22.27 0.21 0.80 16 6 C -0.23 -6.81 5.89 -20.01 -0.12 -6.93 16 7 C 0.53 16.07 8.25 70.16 0.58 16.65 16 8 O -0.55 -22.06 15.94 26.71 0.43 -21.63 16 9 O -0.50 -9.67 12.67 -57.03 -0.72 -10.39 16 10 C 0.21 7.46 6.70 22.85 0.15 7.61 16 11 O -0.30 -13.14 8.21 -68.63 -0.56 -13.70 16 12 C 0.08 3.48 4.68 71.98 0.34 3.81 16 13 C 0.00 -0.19 4.41 29.85 0.13 -0.06 16 14 C -0.54 -31.88 9.66 25.60 0.25 -31.63 16 15 H 0.05 2.96 7.99 -2.91 -0.02 2.93 16 16 C 0.02 1.16 5.47 84.66 0.46 1.62 16 17 N -0.94 -59.17 13.96 21.45 0.30 -58.87 16 18 Si 0.94 46.48 27.47 68.60 1.88 48.37 16 19 H -0.26 -12.54 7.11 99.48 0.71 -11.83 16 20 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 21 H -0.26 -12.53 6.54 99.48 0.65 -11.88 16 22 C -0.28 -8.79 8.97 22.44 0.20 -8.59 16 23 H 0.08 0.50 7.65 -2.39 -0.02 0.48 16 24 H 0.08 0.49 7.65 -2.39 -0.02 0.48 16 25 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.18 1.49 6.26 -2.91 -0.02 1.47 16 27 H 0.18 2.15 7.60 -2.91 -0.02 2.12 16 28 H 0.43 4.64 9.11 -74.06 -0.67 3.97 16 29 H 0.06 2.77 7.65 -2.39 -0.02 2.75 16 30 H 0.07 2.77 7.67 -2.39 -0.02 2.75 16 31 H 0.02 1.21 7.20 -2.39 -0.02 1.19 16 32 H 0.02 1.15 7.57 -2.39 -0.02 1.13 16 33 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 34 H 0.14 4.50 6.31 -2.92 -0.02 4.48 16 Total: -1.00 -79.39 297.62 4.46 -74.93 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: 0.41 Total: 3.67 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: 3.67 Total: -14.44 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: 0.30 Total: -58.87 kcal Atomic # 8 Polarization: -51.85 SS G_CDS: -1.81 Total: -53.66 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 1.88 Total: 48.37 kcal Total: -79.39 4.46 -74.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042313320.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.897 kcal (2) G-P(sol) polarization free energy of solvation -79.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds