Wall clock time and date at job start Mon Mar 30 2020 08:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99538 * 2 1 4 4 H 1.48498 * 109.46980 * 269.71935 * 3 2 1 5 5 H 1.48496 * 109.47258 * 29.72343 * 3 2 1 6 6 H 1.48500 * 109.46669 * 149.72567 * 3 2 1 7 7 C 1.37868 * 120.00267 * 179.71834 * 2 1 3 8 8 H 1.08000 * 120.00414 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00125 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47364 * 179.97438 * 9 7 2 11 11 C 1.40076 * 111.00244 * 169.99754 * 10 9 7 12 12 C 1.38834 * 120.00165 * 54.82450 * 11 10 9 13 13 C 1.38109 * 120.00999 * 179.74205 * 12 11 10 14 14 C 1.38864 * 120.01686 * 0.51475 * 13 12 11 15 15 N 1.40001 * 119.99677 * 179.74217 * 14 13 12 16 16 C 1.38838 * 120.00974 * 359.76518 * 14 13 12 17 17 C 1.38197 * 119.98889 * 359.97438 * 16 14 13 18 18 Cl 1.73601 * 120.00870 * 180.02562 * 17 16 14 19 19 C 1.46904 * 110.99863 * 293.94946 * 10 9 7 20 20 C 1.52992 * 117.49948 * 235.29249 * 19 10 9 21 21 C 1.52996 * 117.49724 * 166.66610 * 19 10 9 22 22 H 0.97004 * 120.00307 * 0.27760 * 1 2 3 23 23 H 1.09005 * 109.46850 * 299.99637 * 9 7 2 24 24 H 1.09004 * 109.47053 * 59.99325 * 9 7 2 25 25 H 1.08001 * 119.99305 * 359.97438 * 12 11 10 26 26 H 1.07998 * 119.98950 * 180.25960 * 13 12 11 27 27 H 0.96998 * 120.00571 * 180.02562 * 15 14 13 28 28 H 0.97007 * 119.99825 * 0.02562 * 15 14 13 29 29 H 1.08006 * 120.00845 * 180.02562 * 16 14 13 30 30 H 1.08995 * 115.54668 * 21.00466 * 19 10 9 31 31 H 1.09005 * 117.50019 * 0.02562 * 20 19 10 32 32 H 1.08997 * 117.50010 * 145.02079 * 20 19 10 33 33 H 1.08992 * 117.50240 * 214.97962 * 21 19 10 34 34 H 1.09005 * 117.49959 * 0.02562 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.5025 2.0431 -1.4001 5 1 1.4436 2.6544 0.6942 6 1 3.5437 1.4420 0.7059 7 6 2.0046 -1.1939 0.0059 8 1 3.0846 -1.1940 0.0055 9 6 1.2512 -2.4991 0.0117 10 7 2.2058 -3.6156 0.0167 11 6 1.5532 -4.8330 0.2493 12 6 0.4940 -5.2189 -0.5612 13 6 -0.1460 -6.4216 -0.3353 14 6 0.2625 -7.2406 0.7090 15 7 -0.3902 -8.4573 0.9409 16 6 1.3179 -6.8529 1.5236 17 6 1.9621 -5.6519 1.2945 18 17 3.2822 -5.1669 2.3123 19 6 2.9710 -3.6595 -1.2365 20 6 2.9475 -4.9654 -2.0332 21 6 4.2116 -4.5541 -1.2757 22 1 -0.4851 0.8400 -0.0041 23 1 0.6242 -2.5527 0.9018 24 1 0.6247 -2.5610 -0.8782 25 1 0.1731 -4.5800 -1.3707 26 1 -0.9672 -6.7234 -0.9686 27 1 -0.1051 -9.0293 1.6706 28 1 -1.1275 -8.7283 0.3718 29 1 1.6359 -7.4901 2.3356 30 1 3.0053 -2.7267 -1.7993 31 1 2.3638 -5.7919 -1.6278 32 1 2.9660 -4.8920 -3.1206 33 1 5.0617 -4.2102 -1.8647 34 1 4.4597 -5.1104 -0.3717 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042531232.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:39 Heat of formation + Delta-G solvation = 57.961591 kcal Electronic energy + Delta-G solvation = -18073.827830 eV Core-core repulsion = 15226.399191 eV Total energy + Delta-G solvation = -2847.428639 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.82902 -37.42606 -35.93814 -34.18273 -33.27559 -31.76076 -30.41268 -28.00755 -25.74328 -22.96288 -22.15167 -21.92386 -21.50675 -19.51505 -17.09427 -16.86652 -16.33714 -15.61635 -15.51338 -14.36951 -14.26792 -14.15355 -13.64318 -13.39464 -13.01013 -12.48114 -12.13218 -11.78810 -11.55789 -11.39052 -11.21843 -11.06226 -10.80567 -10.72267 -10.32053 -10.06227 -9.96623 -9.71125 -9.57245 -9.21125 -8.42797 -8.41526 -7.29264 -7.16925 -6.00733 -4.01811 1.55413 1.77708 2.70499 3.34102 3.40589 3.45926 3.92755 4.01212 4.39098 4.50740 4.80223 5.16374 5.30398 5.34272 5.48837 5.62425 5.67983 5.74441 5.93460 6.06549 6.15055 6.27768 6.37638 6.39439 6.66729 6.72587 6.78677 6.93217 7.29371 7.33295 7.51214 7.76925 7.88231 8.11552 8.18531 8.61572 9.06159 9.62121 11.09867 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.021615 B = 0.006234 C = 0.005984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.109243 B = 4490.070239 C = 4678.276833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.897 3.103 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.506 4.506 8 H 0.066 0.934 9 C 0.202 3.798 10 N -0.466 5.466 11 C 0.067 3.933 12 C -0.080 4.080 13 C -0.189 4.189 14 C 0.210 3.790 15 N -0.882 5.882 16 C -0.194 4.194 17 C 0.028 3.972 18 Cl -0.059 7.059 19 C 0.056 3.944 20 C -0.227 4.227 21 C -0.181 4.181 22 H 0.261 0.739 23 H 0.033 0.967 24 H -0.002 1.002 25 H 0.130 0.870 26 H 0.119 0.881 27 H 0.395 0.605 28 H 0.396 0.604 29 H 0.126 0.874 30 H 0.125 0.875 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.186 -15.496 -0.379 15.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.725 3.275 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.544 4.544 8 H 0.084 0.916 9 C 0.079 3.921 10 N -0.185 5.185 11 C -0.030 4.030 12 C -0.101 4.101 13 C -0.212 4.212 14 C 0.106 3.894 15 N -0.422 5.422 16 C -0.218 4.218 17 C -0.001 4.001 18 Cl -0.029 7.029 19 C -0.052 4.052 20 C -0.266 4.266 21 C -0.219 4.219 22 H 0.071 0.929 23 H 0.051 0.949 24 H 0.016 0.984 25 H 0.148 0.852 26 H 0.137 0.863 27 H 0.223 0.777 28 H 0.224 0.776 29 H 0.143 0.857 30 H 0.143 0.857 31 H 0.114 0.886 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.503 -15.144 0.119 15.219 hybrid contribution -0.301 0.488 -0.453 0.730 sum 1.202 -14.656 -0.333 14.709 Atomic orbital electron populations 1.69961 1.06045 1.26774 1.51024 1.24960 0.94825 0.99233 0.95449 0.86506 0.79889 0.83102 0.77992 1.20781 1.21332 1.19709 1.21151 0.93698 0.89625 1.49947 0.91568 1.19805 0.89536 0.86319 0.96456 1.59681 1.27037 1.00600 1.31195 1.18588 0.95542 0.93438 0.95382 1.21558 0.94554 0.95308 0.98661 1.20508 1.03959 0.96360 1.00415 1.17504 0.91645 0.86640 0.93571 1.42401 1.40133 1.20959 1.38748 1.20225 0.99940 0.97920 1.03685 1.20611 0.91978 0.94111 0.93388 1.98342 1.46129 1.91853 1.66619 1.22616 0.97579 0.93995 0.91041 1.23583 1.03037 1.01574 0.98396 1.23002 0.91909 1.05039 1.01986 0.92945 0.94911 0.98443 0.85182 0.86253 0.77708 0.77581 0.85653 0.85711 0.88649 0.89750 0.89521 0.89062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.49 13.29 55.43 0.74 -25.76 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -14.05 8.28 -34.44 -0.29 -14.34 16 8 H 0.07 1.84 7.66 -52.49 -0.40 1.44 16 9 C 0.20 5.21 4.19 -4.98 -0.02 5.19 16 10 N -0.47 -10.13 4.06 -164.81 -0.67 -10.80 16 11 C 0.07 1.30 3.35 -83.61 -0.28 1.02 16 12 C -0.08 -1.39 6.79 -39.41 -0.27 -1.66 16 13 C -0.19 -2.73 9.89 -39.40 -0.39 -3.12 16 14 C 0.21 2.81 6.76 -83.67 -0.57 2.24 16 15 N -0.88 -8.21 9.10 32.45 0.30 -7.92 16 16 C -0.19 -2.85 9.67 -39.37 -0.38 -3.24 16 17 C 0.03 0.49 6.33 -39.34 -0.25 0.24 16 18 Cl -0.06 -1.03 28.35 -51.86 -1.47 -2.50 16 19 C 0.06 1.10 5.52 -67.72 -0.37 0.73 16 20 C -0.23 -3.76 9.09 -26.73 -0.24 -4.01 16 21 C -0.18 -3.08 10.29 -26.73 -0.27 -3.35 16 22 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 23 H 0.03 0.93 8.06 -51.93 -0.42 0.51 16 24 H 0.00 -0.06 7.25 -51.93 -0.38 -0.44 16 25 H 0.13 2.34 7.26 -52.49 -0.38 1.96 16 26 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 27 H 0.40 2.94 8.84 -40.82 -0.36 2.58 16 28 H 0.40 2.93 8.84 -40.82 -0.36 2.57 16 29 H 0.13 1.58 8.06 -52.48 -0.42 1.15 16 30 H 0.13 2.64 7.31 -51.93 -0.38 2.26 16 31 H 0.10 1.60 5.42 -51.93 -0.28 1.32 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.09 1.59 8.06 -51.93 -0.42 1.18 16 LS Contribution 300.69 15.07 4.53 4.53 Total: -1.00 -30.03 300.69 -9.23 -39.26 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -4.21 Total: 5.34 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -3.43 Total: -18.80 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 0.36 Total: -44.47 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -1.47 Total: -2.50 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.03 -9.23 -39.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042531232.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.226 kcal (2) G-P(sol) polarization free energy of solvation -30.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds