Wall clock time and date at job start Mon Mar 30 2020 08:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99538 * 2 1 4 4 H 1.48498 * 109.46980 * 269.71935 * 3 2 1 5 5 H 1.48496 * 109.47258 * 29.72343 * 3 2 1 6 6 H 1.48500 * 109.46669 * 149.72567 * 3 2 1 7 7 C 1.37868 * 120.00267 * 179.71834 * 2 1 3 8 8 H 1.08000 * 120.00414 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00125 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47364 * 179.97438 * 9 7 2 11 11 C 1.40076 * 111.00244 * 169.99754 * 10 9 7 12 12 C 1.38834 * 120.00165 * 54.82450 * 11 10 9 13 13 C 1.38109 * 120.00999 * 179.74205 * 12 11 10 14 14 C 1.38864 * 120.01686 * 0.51475 * 13 12 11 15 15 N 1.40001 * 119.99677 * 179.74217 * 14 13 12 16 16 C 1.38838 * 120.00974 * 359.76518 * 14 13 12 17 17 C 1.38197 * 119.98889 * 359.97438 * 16 14 13 18 18 Cl 1.73601 * 120.00870 * 180.02562 * 17 16 14 19 19 C 1.46904 * 110.99863 * 293.94946 * 10 9 7 20 20 C 1.52992 * 117.49948 * 235.29249 * 19 10 9 21 21 C 1.52996 * 117.49724 * 166.66610 * 19 10 9 22 22 H 0.97004 * 120.00307 * 0.27760 * 1 2 3 23 23 H 1.09005 * 109.46850 * 299.99637 * 9 7 2 24 24 H 1.09004 * 109.47053 * 59.99325 * 9 7 2 25 25 H 1.08001 * 119.99305 * 359.97438 * 12 11 10 26 26 H 1.07998 * 119.98950 * 180.25960 * 13 12 11 27 27 H 0.96998 * 120.00571 * 180.02562 * 15 14 13 28 28 H 0.97007 * 119.99825 * 0.02562 * 15 14 13 29 29 H 1.08006 * 120.00845 * 180.02562 * 16 14 13 30 30 H 1.08995 * 115.54668 * 21.00466 * 19 10 9 31 31 H 1.09005 * 117.50019 * 0.02562 * 20 19 10 32 32 H 1.08997 * 117.50010 * 145.02079 * 20 19 10 33 33 H 1.08992 * 117.50240 * 214.97962 * 21 19 10 34 34 H 1.09005 * 117.49959 * 0.02562 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.5025 2.0431 -1.4001 5 1 1.4436 2.6544 0.6942 6 1 3.5437 1.4420 0.7059 7 6 2.0046 -1.1939 0.0059 8 1 3.0846 -1.1940 0.0055 9 6 1.2512 -2.4991 0.0117 10 7 2.2058 -3.6156 0.0167 11 6 1.5532 -4.8330 0.2493 12 6 0.4940 -5.2189 -0.5612 13 6 -0.1460 -6.4216 -0.3353 14 6 0.2625 -7.2406 0.7090 15 7 -0.3902 -8.4573 0.9409 16 6 1.3179 -6.8529 1.5236 17 6 1.9621 -5.6519 1.2945 18 17 3.2822 -5.1669 2.3123 19 6 2.9710 -3.6595 -1.2365 20 6 2.9475 -4.9654 -2.0332 21 6 4.2116 -4.5541 -1.2757 22 1 -0.4851 0.8400 -0.0041 23 1 0.6242 -2.5527 0.9018 24 1 0.6247 -2.5610 -0.8782 25 1 0.1731 -4.5800 -1.3707 26 1 -0.9672 -6.7234 -0.9686 27 1 -0.1051 -9.0293 1.6706 28 1 -1.1275 -8.7283 0.3718 29 1 1.6359 -7.4901 2.3356 30 1 3.0053 -2.7267 -1.7993 31 1 2.3638 -5.7919 -1.6278 32 1 2.9660 -4.8920 -3.1206 33 1 5.0617 -4.2102 -1.8647 34 1 4.4597 -5.1104 -0.3717 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042531232.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:38 Heat of formation + Delta-G solvation = 39.127897 kcal Electronic energy + Delta-G solvation = -18074.644520 eV Core-core repulsion = 15226.399191 eV Total energy + Delta-G solvation = -2848.245329 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -41.17899 -38.75238 -37.26203 -35.62374 -34.98238 -33.42919 -31.64787 -29.62174 -27.41741 -24.52564 -23.81907 -23.25605 -22.83842 -20.97647 -18.52488 -18.15921 -17.78445 -17.29345 -17.01307 -16.21098 -15.52548 -15.41858 -15.04430 -14.69957 -14.28282 -14.25363 -13.82680 -13.57879 -12.99690 -12.82853 -12.75395 -12.61200 -12.45202 -12.30569 -12.04419 -11.73289 -11.46879 -11.34249 -11.07956 -10.88748 -10.57095 -9.68226 -8.88179 -8.34843 -8.15360 -6.26790 0.31135 0.51128 1.39104 1.41912 1.43545 1.55320 2.42142 2.77065 2.93979 3.07250 3.14439 3.32882 3.94750 4.05149 4.18819 4.23147 4.34949 4.50272 4.65551 4.81949 4.85592 4.95883 4.99436 5.11918 5.23274 5.26381 5.27187 5.36412 5.56503 5.71309 5.74538 6.12556 6.35855 6.54521 6.88530 6.88771 7.05836 7.42287 8.93284 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.021615 B = 0.006234 C = 0.005984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.109243 B = 4490.070239 C = 4678.276833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.518 4.518 8 H 0.061 0.939 9 C 0.225 3.775 10 N -0.469 5.469 11 C 0.029 3.971 12 C -0.091 4.091 13 C -0.186 4.186 14 C 0.226 3.774 15 N -0.860 5.860 16 C -0.194 4.194 17 C 0.016 3.984 18 Cl -0.067 7.067 19 C 0.021 3.979 20 C -0.201 4.201 21 C -0.164 4.164 22 H 0.264 0.736 23 H -0.005 1.005 24 H -0.027 1.027 25 H 0.113 0.887 26 H 0.147 0.853 27 H 0.409 0.591 28 H 0.410 0.590 29 H 0.150 0.850 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.510 -17.389 -0.522 17.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.193 4.193 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.557 4.557 8 H 0.079 0.921 9 C 0.100 3.900 10 N -0.188 5.188 11 C -0.067 4.067 12 C -0.112 4.112 13 C -0.210 4.210 14 C 0.120 3.880 15 N -0.401 5.401 16 C -0.218 4.218 17 C -0.012 4.012 18 Cl -0.038 7.038 19 C -0.087 4.087 20 C -0.240 4.240 21 C -0.202 4.202 22 H 0.073 0.927 23 H 0.013 0.987 24 H -0.009 1.009 25 H 0.131 0.869 26 H 0.165 0.835 27 H 0.239 0.761 28 H 0.240 0.760 29 H 0.168 0.832 30 H 0.119 0.881 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.820 -17.103 -0.023 17.200 hybrid contribution -0.480 0.906 -0.399 1.100 sum 1.340 -16.197 -0.422 16.258 Atomic orbital electron populations 1.70086 1.07623 1.27790 1.51896 1.25837 0.95671 1.02907 0.94881 0.85425 0.78509 0.78486 0.78455 1.19622 1.20848 1.19242 1.21420 0.93586 0.90902 1.49769 0.92050 1.19300 0.89456 0.87839 0.93358 1.59505 1.26111 1.00749 1.32426 1.18670 0.97366 0.93268 0.97427 1.21438 0.94857 0.96484 0.98391 1.20725 1.04094 0.95199 1.00945 1.17527 0.90758 0.87457 0.92256 1.42370 1.39548 1.19265 1.38959 1.20462 0.99805 0.97097 1.04399 1.20742 0.92370 0.95083 0.93014 1.98329 1.46632 1.92127 1.66745 1.22525 1.00143 0.94590 0.91431 1.23551 1.02107 0.99242 0.99083 1.23033 0.91937 1.03192 1.02055 0.92743 0.98685 1.00882 0.86942 0.83519 0.76096 0.75961 0.83223 0.88127 0.88563 0.87879 0.87482 0.89451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.78 13.29 21.44 0.28 -56.50 16 2 C 0.01 0.29 5.46 84.65 0.46 0.75 16 3 Si 0.97 45.16 29.54 68.60 2.03 47.18 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.52 -29.99 8.28 25.60 0.21 -29.78 16 8 H 0.06 3.53 7.66 -2.91 -0.02 3.51 16 9 C 0.23 12.33 4.19 85.56 0.36 12.69 16 10 N -0.47 -21.24 4.06 -675.35 -2.74 -23.98 16 11 C 0.03 1.15 3.35 38.13 0.13 1.28 16 12 C -0.09 -3.19 6.79 22.38 0.15 -3.04 16 13 C -0.19 -5.03 9.89 22.39 0.22 -4.81 16 14 C 0.23 5.39 6.76 38.13 0.26 5.65 16 15 N -0.86 -12.42 9.10 -51.24 -0.47 -12.89 16 16 C -0.19 -5.28 9.67 22.40 0.22 -5.06 16 17 C 0.02 0.57 6.33 22.43 0.14 0.71 16 18 Cl -0.07 -2.37 28.35 -2.72 -0.08 -2.44 16 19 C 0.02 0.86 5.52 44.91 0.25 1.11 16 20 C -0.20 -6.53 9.09 30.59 0.28 -6.25 16 21 C -0.16 -5.46 10.29 30.59 0.31 -5.14 16 22 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 23 H 0.00 -0.30 8.06 -2.38 -0.02 -0.32 16 24 H -0.03 -1.53 7.25 -2.39 -0.02 -1.55 16 25 H 0.11 4.26 7.26 -2.91 -0.02 4.24 16 26 H 0.15 3.09 8.06 -2.91 -0.02 3.06 16 27 H 0.41 4.24 8.84 -92.71 -0.82 3.42 16 28 H 0.41 4.23 8.84 -92.70 -0.82 3.41 16 29 H 0.15 3.29 8.06 -2.91 -0.02 3.26 16 30 H 0.10 4.48 7.31 -2.39 -0.02 4.47 16 31 H 0.10 3.15 5.42 -2.38 -0.01 3.13 16 32 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 33 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 34 H 0.09 2.99 8.06 -2.38 -0.02 2.97 16 Total: -1.00 -67.31 300.69 1.51 -65.80 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -0.50 Total: 14.72 kcal Atomic # 6 Polarization: -34.88 SS G_CDS: 2.99 Total: -31.89 kcal Atomic # 7 Polarization: -90.44 SS G_CDS: -2.92 Total: -93.37 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Atomic # 17 Polarization: -2.37 SS G_CDS: -0.08 Total: -2.44 kcal Total: -67.31 1.51 -65.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042531232.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.929 kcal (2) G-P(sol) polarization free energy of solvation -67.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds