Wall clock time and date at job start Mon Mar 30 2020 07:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00003 * 2 1 4 4 H 1.48499 * 109.47217 * 270.00205 * 3 2 1 5 5 H 1.48503 * 109.47000 * 30.00410 * 3 2 1 6 6 H 1.48504 * 109.47171 * 150.00386 * 3 2 1 7 7 C 1.37872 * 120.00374 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00495 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99740 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47027 * 175.88307 * 9 7 2 11 11 C 1.40108 * 110.99716 * 164.12278 * 10 9 7 12 12 C 1.39464 * 120.09642 * 244.20674 * 11 10 9 13 13 N 1.40020 * 120.09010 * 0.02562 * 12 11 10 14 14 C 1.38658 * 119.81792 * 180.25157 * 12 11 10 15 15 C 1.38299 * 120.01776 * 359.49414 * 14 12 11 16 16 C 1.38217 * 120.19771 * 0.25361 * 15 14 12 17 17 C 1.38399 * 120.18391 * 0.02562 * 16 15 14 18 18 Cl 1.73592 * 120.01374 * 179.97438 * 17 16 15 19 19 C 1.46896 * 110.99815 * 288.07599 * 10 9 7 20 20 C 1.53009 * 117.49553 * 228.83600 * 19 10 9 21 21 C 1.53002 * 117.49711 * 160.17560 * 19 10 9 22 22 H 0.97005 * 120.00286 * 359.97438 * 1 2 3 23 23 H 1.08992 * 109.47306 * 55.87649 * 9 7 2 24 24 H 1.09005 * 109.46359 * 295.87848 * 9 7 2 25 25 H 0.97003 * 119.99738 * 180.23313 * 13 12 11 26 26 H 0.96998 * 120.00143 * 0.23147 * 13 12 11 27 27 H 1.07992 * 119.98834 * 179.76682 * 14 12 11 28 28 H 1.07998 * 119.90123 * 180.26966 * 15 14 12 29 29 H 1.08006 * 119.91258 * 180.02562 * 16 15 14 30 30 H 1.08998 * 115.54894 * 14.50527 * 19 10 9 31 31 H 1.08995 * 117.49685 * 359.97438 * 20 19 10 32 32 H 1.09000 * 117.49344 * 145.02673 * 20 19 10 33 33 H 1.08996 * 117.49903 * 214.97374 * 21 19 10 34 34 H 1.09002 * 117.49645 * 0.02562 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2026 -3.6138 -0.1015 11 6 1.5946 -4.8260 0.2505 12 6 2.0331 -5.5284 1.3727 13 7 3.0819 -5.0238 2.1511 14 6 1.4307 -6.7301 1.7128 15 6 0.3911 -7.2242 0.9462 16 6 -0.0475 -6.5261 -0.1631 17 6 0.5516 -5.3287 -0.5134 18 17 -0.0024 -4.4559 -1.9080 19 6 2.7862 -3.6888 -1.4475 20 6 2.7933 -5.0536 -2.1393 21 6 4.0991 -4.4583 -1.6064 22 1 -0.4851 0.8401 0.0004 23 1 0.5705 -2.5250 -0.8526 24 1 0.6806 -2.5900 0.9227 25 1 3.3881 -5.5151 2.9295 26 1 3.5023 -4.1830 1.9121 27 1 1.7706 -7.2781 2.5790 28 1 -0.0796 -8.1582 1.2153 29 1 -0.8601 -6.9160 -0.7583 30 1 2.6400 -2.8082 -2.0730 31 1 2.3654 -5.8957 -1.5954 32 1 2.6523 -5.0707 -3.2200 33 1 4.8164 -4.0842 -2.3368 34 1 4.5295 -4.9091 -0.7122 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042531297.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:34 Heat of formation + Delta-G solvation = 64.050384 kcal Electronic energy + Delta-G solvation = -18541.930862 eV Core-core repulsion = 15694.766253 eV Total energy + Delta-G solvation = -2847.164609 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.90069 -37.00073 -35.94010 -34.00019 -33.58209 -32.18378 -29.36104 -28.14427 -26.04995 -22.66656 -22.16099 -22.07508 -21.27138 -19.59707 -16.92142 -16.67914 -16.26004 -15.58158 -15.52861 -14.40961 -14.30101 -14.05543 -13.87371 -13.30605 -12.76979 -12.38638 -12.11791 -11.74480 -11.48303 -11.25630 -11.19335 -10.94841 -10.83293 -10.69675 -10.32258 -10.14343 -10.00152 -9.81257 -9.50416 -9.20459 -8.40373 -8.10836 -7.27556 -7.08752 -5.99059 -4.00636 1.57318 1.88422 2.69440 3.32550 3.38990 3.42557 4.07311 4.30811 4.36534 4.49761 4.78737 5.20124 5.34491 5.42687 5.52462 5.61062 5.65103 5.75528 5.92558 6.09781 6.15107 6.33410 6.38845 6.64203 6.66889 6.71786 6.74182 6.98845 7.26497 7.48874 7.77168 7.90015 8.11424 8.19504 8.25469 8.60140 9.06912 9.62483 11.10820 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.020971 B = 0.007348 C = 0.007063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.864899 B = 3809.635732 C = 3963.643498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.896 3.104 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.188 3.812 10 N -0.469 5.469 11 C 0.040 3.960 12 C 0.245 3.755 13 N -0.863 5.863 14 C -0.205 4.205 15 C -0.074 4.074 16 C -0.177 4.177 17 C -0.011 4.011 18 Cl -0.056 7.056 19 C 0.059 3.941 20 C -0.214 4.214 21 C -0.184 4.184 22 H 0.260 0.740 23 H 0.028 0.972 24 H 0.023 0.977 25 H 0.391 0.609 26 H 0.413 0.587 27 H 0.120 0.880 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.245 -13.241 0.350 13.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.188 5.188 11 C -0.060 4.060 12 C 0.137 3.863 13 N -0.401 5.401 14 C -0.229 4.229 15 C -0.093 4.093 16 C -0.198 4.198 17 C -0.040 4.040 18 Cl -0.026 7.026 19 C -0.049 4.049 20 C -0.252 4.252 21 C -0.222 4.222 22 H 0.070 0.930 23 H 0.045 0.955 24 H 0.042 0.958 25 H 0.218 0.782 26 H 0.244 0.756 27 H 0.138 0.862 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.136 0.864 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.403 -12.878 0.560 13.332 hybrid contribution -0.034 0.981 -0.405 1.062 sum 3.369 -11.897 0.155 12.365 Atomic orbital electron populations 1.69969 1.05963 1.26645 1.50871 1.24957 0.94815 0.99105 0.95611 0.86541 0.79767 0.83333 0.77995 1.20803 1.21376 1.19878 1.21141 0.93516 0.89733 1.50109 0.91872 1.20050 0.89935 0.85808 0.97657 1.59563 1.35261 1.00915 1.23093 1.18325 0.96363 0.95108 0.96159 1.17487 0.88163 0.91074 0.89580 1.42478 1.38098 1.28341 1.31173 1.20494 1.01641 0.97198 1.03538 1.20654 0.95800 0.98883 0.93971 1.20661 1.03276 0.95602 1.00309 1.21577 0.96737 0.94451 0.91263 1.98365 1.88451 1.75495 1.40335 1.22498 0.97835 0.94316 0.90292 1.23553 1.02304 0.99271 1.00095 1.23077 0.91497 1.05342 1.02306 0.92991 0.95467 0.95847 0.78198 0.75611 0.86181 0.85957 0.86044 0.86353 0.88789 0.89677 0.89608 0.89557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.51 -13.94 8.64 -34.44 -0.30 -14.24 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.19 4.83 4.09 -4.97 -0.02 4.81 16 10 N -0.47 -9.87 3.77 -164.67 -0.62 -10.49 16 11 C 0.04 0.77 3.50 -83.44 -0.29 0.47 16 12 C 0.24 4.04 6.78 -83.50 -0.57 3.48 16 13 N -0.86 -12.42 9.09 32.54 0.30 -12.13 16 14 C -0.20 -2.87 9.89 -39.40 -0.39 -3.26 16 15 C -0.07 -1.00 10.04 -39.57 -0.40 -1.40 16 16 C -0.18 -2.73 9.82 -39.53 -0.39 -3.12 16 17 C -0.01 -0.19 4.12 -39.35 -0.16 -0.36 16 18 Cl -0.06 -1.06 22.80 -51.86 -1.18 -2.24 16 19 C 0.06 1.16 4.34 -67.71 -0.29 0.87 16 20 C -0.21 -3.61 7.47 -26.68 -0.20 -3.81 16 21 C -0.18 -3.06 10.40 -26.69 -0.28 -3.34 16 22 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 23 H 0.03 0.74 5.52 -51.93 -0.29 0.45 16 24 H 0.02 0.67 7.98 -51.93 -0.41 0.25 16 25 H 0.39 4.29 8.85 -40.82 -0.36 3.93 16 26 H 0.41 6.59 8.11 -40.82 -0.33 6.26 16 27 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 28 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 30 H 0.12 2.57 7.62 -51.93 -0.40 2.18 16 31 H 0.09 1.64 5.45 -51.93 -0.28 1.36 16 32 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 LS Contribution 292.58 15.07 4.41 4.41 Total: -1.00 -29.52 292.58 -8.92 -38.44 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -4.15 Total: 9.62 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -3.38 Total: -18.41 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: 0.41 Total: -48.36 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.18 Total: -2.24 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.52 -8.92 -38.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042531297.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.488 kcal (2) G-P(sol) polarization free energy of solvation -29.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds