Wall clock time and date at job start Mon Mar 30 2020 07:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00003 * 2 1 4 4 H 1.48499 * 109.47217 * 270.00205 * 3 2 1 5 5 H 1.48503 * 109.47000 * 30.00410 * 3 2 1 6 6 H 1.48504 * 109.47171 * 150.00386 * 3 2 1 7 7 C 1.37872 * 120.00374 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00495 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99740 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47027 * 175.88307 * 9 7 2 11 11 C 1.40108 * 110.99716 * 164.12278 * 10 9 7 12 12 C 1.39464 * 120.09642 * 244.20674 * 11 10 9 13 13 N 1.40020 * 120.09010 * 0.02562 * 12 11 10 14 14 C 1.38658 * 119.81792 * 180.25157 * 12 11 10 15 15 C 1.38299 * 120.01776 * 359.49414 * 14 12 11 16 16 C 1.38217 * 120.19771 * 0.25361 * 15 14 12 17 17 C 1.38399 * 120.18391 * 0.02562 * 16 15 14 18 18 Cl 1.73592 * 120.01374 * 179.97438 * 17 16 15 19 19 C 1.46896 * 110.99815 * 288.07599 * 10 9 7 20 20 C 1.53009 * 117.49553 * 228.83600 * 19 10 9 21 21 C 1.53002 * 117.49711 * 160.17560 * 19 10 9 22 22 H 0.97005 * 120.00286 * 359.97438 * 1 2 3 23 23 H 1.08992 * 109.47306 * 55.87649 * 9 7 2 24 24 H 1.09005 * 109.46359 * 295.87848 * 9 7 2 25 25 H 0.97003 * 119.99738 * 180.23313 * 13 12 11 26 26 H 0.96998 * 120.00143 * 0.23147 * 13 12 11 27 27 H 1.07992 * 119.98834 * 179.76682 * 14 12 11 28 28 H 1.07998 * 119.90123 * 180.26966 * 15 14 12 29 29 H 1.08006 * 119.91258 * 180.02562 * 16 15 14 30 30 H 1.08998 * 115.54894 * 14.50527 * 19 10 9 31 31 H 1.08995 * 117.49685 * 359.97438 * 20 19 10 32 32 H 1.09000 * 117.49344 * 145.02673 * 20 19 10 33 33 H 1.08996 * 117.49903 * 214.97374 * 21 19 10 34 34 H 1.09002 * 117.49645 * 0.02562 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2026 -3.6138 -0.1015 11 6 1.5946 -4.8260 0.2505 12 6 2.0331 -5.5284 1.3727 13 7 3.0819 -5.0238 2.1511 14 6 1.4307 -6.7301 1.7128 15 6 0.3911 -7.2242 0.9462 16 6 -0.0475 -6.5261 -0.1631 17 6 0.5516 -5.3287 -0.5134 18 17 -0.0024 -4.4559 -1.9080 19 6 2.7862 -3.6888 -1.4475 20 6 2.7933 -5.0536 -2.1393 21 6 4.0991 -4.4583 -1.6064 22 1 -0.4851 0.8401 0.0004 23 1 0.5705 -2.5250 -0.8526 24 1 0.6806 -2.5900 0.9227 25 1 3.3881 -5.5151 2.9295 26 1 3.5023 -4.1830 1.9121 27 1 1.7706 -7.2781 2.5790 28 1 -0.0796 -8.1582 1.2153 29 1 -0.8601 -6.9160 -0.7583 30 1 2.6400 -2.8082 -2.0730 31 1 2.3654 -5.8957 -1.5954 32 1 2.6523 -5.0707 -3.2200 33 1 4.8164 -4.0842 -2.3368 34 1 4.5295 -4.9091 -0.7122 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042531297.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:33 Heat of formation + Delta-G solvation = 45.598782 kcal Electronic energy + Delta-G solvation = -18542.730983 eV Core-core repulsion = 15694.766253 eV Total energy + Delta-G solvation = -2847.964730 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.24812 -38.35758 -37.33441 -35.52841 -35.05580 -34.00962 -30.79850 -29.49129 -27.84620 -24.35097 -23.72403 -23.42807 -22.56084 -21.04149 -18.56377 -18.07372 -17.67167 -17.22897 -17.02416 -16.20842 -15.66952 -15.32410 -15.14518 -14.70223 -14.35981 -14.20242 -13.55673 -13.40827 -12.87990 -12.80423 -12.74848 -12.48928 -12.37372 -12.30038 -12.04840 -11.77719 -11.52754 -11.30762 -11.13090 -10.93697 -10.53401 -9.42095 -8.87251 -8.31961 -8.13566 -6.23861 0.32358 0.67028 1.34338 1.41120 1.41829 1.53159 2.41583 2.85800 2.95916 3.15998 3.17716 3.33980 4.03756 4.14206 4.18919 4.30124 4.42802 4.55569 4.73925 4.80954 4.81192 4.95775 5.09989 5.22060 5.28774 5.33244 5.36686 5.52066 5.57681 5.73617 5.89487 6.15034 6.34390 6.57122 6.90191 6.92096 7.17306 7.44242 8.95285 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.020971 B = 0.007348 C = 0.007063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.864899 B = 3809.635732 C = 3963.643498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.965 3.035 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.516 4.516 8 H 0.061 0.939 9 C 0.208 3.792 10 N -0.462 5.462 11 C -0.001 4.001 12 C 0.234 3.766 13 N -0.857 5.857 14 C -0.197 4.197 15 C -0.060 4.060 16 C -0.184 4.184 17 C -0.028 4.028 18 Cl -0.078 7.078 19 C 0.029 3.971 20 C -0.192 4.192 21 C -0.161 4.161 22 H 0.262 0.738 23 H 0.009 0.991 24 H -0.017 1.017 25 H 0.408 0.592 26 H 0.404 0.596 27 H 0.156 0.844 28 H 0.165 0.835 29 H 0.137 0.863 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.425 -15.047 1.126 15.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.195 4.195 3 Si 0.790 3.210 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.554 4.554 8 H 0.079 0.921 9 C 0.084 3.916 10 N -0.181 5.181 11 C -0.101 4.101 12 C 0.126 3.874 13 N -0.395 5.395 14 C -0.220 4.220 15 C -0.078 4.078 16 C -0.206 4.206 17 C -0.057 4.057 18 Cl -0.049 7.049 19 C -0.079 4.079 20 C -0.231 4.231 21 C -0.199 4.199 22 H 0.070 0.930 23 H 0.026 0.974 24 H 0.001 0.999 25 H 0.238 0.762 26 H 0.234 0.766 27 H 0.174 0.826 28 H 0.182 0.818 29 H 0.155 0.845 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.123 0.877 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.611 -14.723 1.352 15.487 hybrid contribution -0.427 1.407 -0.599 1.588 sum 4.184 -13.316 0.753 13.978 Atomic orbital electron populations 1.70107 1.07614 1.27531 1.52041 1.25833 0.95633 1.02831 0.95194 0.85456 0.78626 0.78719 0.78223 1.20134 1.21053 1.18876 1.21443 0.93520 0.90956 1.49495 0.92068 1.19580 0.90054 0.87373 0.94628 1.59398 1.33956 1.00853 1.23925 1.18529 0.98217 0.95144 0.98225 1.17757 0.88800 0.91917 0.88972 1.42445 1.37500 1.28029 1.31533 1.20937 1.00852 0.95999 1.04228 1.21158 0.94787 0.99648 0.92246 1.20968 1.03546 0.94750 1.01294 1.21764 0.97456 0.95475 0.91031 1.98349 1.88697 1.76294 1.41517 1.22344 1.00885 0.94726 0.89987 1.23460 1.02011 0.97334 1.00269 1.23121 0.90866 1.03293 1.02631 0.92968 0.97365 0.99911 0.76207 0.76634 0.82619 0.81755 0.84470 0.89438 0.88906 0.88769 0.87746 0.89100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.95 13.29 21.44 0.28 -56.67 16 2 C 0.00 0.17 5.46 84.65 0.46 0.63 16 3 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 4 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 5 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.52 -29.36 8.64 25.60 0.22 -29.14 16 8 H 0.06 3.42 7.81 -2.91 -0.02 3.40 16 9 C 0.21 11.22 4.09 85.56 0.35 11.57 16 10 N -0.46 -20.02 3.77 -674.88 -2.54 -22.56 16 11 C 0.00 -0.06 3.50 38.23 0.13 0.08 16 12 C 0.23 7.38 6.78 38.23 0.26 7.64 16 13 N -0.86 -23.48 9.09 -50.97 -0.46 -23.94 16 14 C -0.20 -4.81 9.89 22.38 0.22 -4.59 16 15 C -0.06 -1.39 10.04 22.28 0.22 -1.16 16 16 C -0.18 -5.35 9.82 22.30 0.22 -5.13 16 17 C -0.03 -1.02 4.12 22.42 0.09 -0.93 16 18 Cl -0.08 -3.05 22.80 -2.72 -0.06 -3.11 16 19 C 0.03 1.16 4.34 44.92 0.19 1.36 16 20 C -0.19 -6.40 7.47 30.63 0.23 -6.17 16 21 C -0.16 -5.17 10.40 30.62 0.32 -4.85 16 22 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 23 H 0.01 0.49 5.52 -2.39 -0.01 0.47 16 24 H -0.02 -1.05 7.98 -2.38 -0.02 -1.06 16 25 H 0.41 8.01 8.85 -92.71 -0.82 7.19 16 26 H 0.40 12.74 8.11 -92.71 -0.75 11.99 16 27 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 28 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 29 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 30 H 0.09 4.00 7.62 -2.39 -0.02 3.98 16 31 H 0.09 3.16 5.45 -2.39 -0.01 3.15 16 32 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 33 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 34 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 Total: -1.00 -66.34 292.58 1.73 -64.61 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: -0.44 Total: 25.44 kcal Atomic # 6 Polarization: -33.63 SS G_CDS: 2.92 Total: -30.71 kcal Atomic # 7 Polarization: -100.45 SS G_CDS: -2.72 Total: -103.17 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 17 Polarization: -3.05 SS G_CDS: -0.06 Total: -3.11 kcal Total: -66.34 1.73 -64.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042531297.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.204 kcal (2) G-P(sol) polarization free energy of solvation -66.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds