Wall clock time and date at job start Mon Mar 30 2020 08:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99920 * 2 1 4 4 H 1.48498 * 109.47189 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47067 * 299.99382 * 3 2 1 6 6 H 1.48504 * 109.47338 * 59.99395 * 3 2 1 7 7 C 1.37876 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00240 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00030 * 0.02562 * 7 2 1 10 10 N 1.46894 * 109.47194 * 173.59535 * 9 7 2 11 11 C 1.46895 * 111.00077 * 160.98754 * 10 9 7 12 12 C 1.50701 * 109.47628 * 195.49742 * 11 10 9 13 13 C 1.38610 * 120.42232 * 258.46100 * 12 11 10 14 14 C 1.38676 * 118.43320 * 179.77565 * 13 12 11 15 15 C 1.38191 * 119.19012 * 0.47262 * 14 13 12 16 16 N 1.31873 * 120.78076 * 359.76480 * 15 14 13 17 17 C 1.31972 * 121.70996 * 0.02562 * 16 15 14 18 18 Cl 1.73602 * 119.63567 * 179.97438 * 17 16 15 19 19 C 1.46895 * 111.00435 * 284.94290 * 10 9 7 20 20 C 1.53000 * 117.50082 * 143.02604 * 19 10 9 21 21 C 1.52993 * 60.00415 * 252.51286 * 20 19 10 22 22 H 0.97000 * 120.00040 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.46940 * 53.59968 * 9 7 2 24 24 H 1.08994 * 109.47041 * 293.60102 * 9 7 2 25 25 H 1.09004 * 109.47052 * 315.49339 * 11 10 9 26 26 H 1.08999 * 109.47379 * 75.49422 * 11 10 9 27 27 H 1.07999 * 120.78611 * 0.02562 * 13 12 11 28 28 H 1.07995 * 120.40219 * 180.23562 * 14 13 12 29 29 H 1.08000 * 119.60521 * 179.79096 * 15 14 13 30 30 H 1.08993 * 115.55241 * 288.73827 * 19 10 9 31 31 H 1.09005 * 117.50066 * 0.02562 * 20 19 10 32 32 H 1.08999 * 117.50157 * 145.01975 * 20 19 10 33 33 H 1.09001 * 117.50166 * 252.51572 * 21 20 19 34 34 H 1.09003 * 117.52098 * 107.47594 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.1982 -3.6114 -0.1533 11 6 1.5975 -4.8787 0.2835 12 6 2.6808 -5.9086 0.4751 13 6 2.9047 -6.8795 -0.4885 14 6 3.9154 -7.8039 -0.2721 15 6 4.6547 -7.7338 0.8934 16 7 4.4114 -6.7995 1.7917 17 6 3.4607 -5.9008 1.6179 18 17 3.1864 -4.6949 2.8361 19 6 2.6783 -3.7063 -1.5384 20 6 4.1403 -4.1028 -1.7537 21 6 3.6933 -2.6618 -2.0074 22 1 -0.4850 0.8400 -0.0004 23 1 0.5416 -2.5091 -0.8269 24 1 0.7127 -2.6079 0.9420 25 1 1.0711 -4.7256 1.2257 26 1 0.8944 -5.2274 -0.4729 27 1 2.3087 -6.9127 -1.3886 28 1 4.1197 -8.5716 -1.0036 29 1 5.4412 -8.4525 1.0704 30 1 1.9481 -4.0606 -2.2658 31 1 4.7458 -4.2937 -0.8676 32 1 4.3721 -4.7183 -2.6229 33 1 3.6308 -2.3292 -3.0435 34 1 4.0043 -1.9040 -1.2883 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052709858.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:24 Heat of formation + Delta-G solvation = 64.561677 kcal Electronic energy + Delta-G solvation = -18097.610898 eV Core-core repulsion = 15250.468461 eV Total energy + Delta-G solvation = -2847.142438 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.16943 -37.62523 -36.19074 -34.06775 -33.00634 -31.99893 -30.86585 -27.30637 -25.01823 -23.47124 -22.22848 -21.90766 -21.56221 -19.53271 -17.24245 -16.67696 -16.48215 -15.24389 -14.89336 -14.70164 -14.36296 -14.26116 -13.68007 -13.32800 -13.12140 -12.45353 -12.27396 -11.89850 -11.42651 -11.32245 -11.21952 -10.88873 -10.82272 -10.69104 -10.54226 -10.08343 -9.72925 -9.53409 -9.49394 -9.20300 -9.13919 -8.62196 -8.38677 -7.35346 -5.99638 -3.98922 1.06742 1.27872 2.22983 3.32262 3.40238 3.44664 3.74317 4.43552 4.54167 4.57188 4.73357 4.87415 4.99414 5.06149 5.28482 5.35981 5.53568 5.62157 5.72086 5.74146 6.02458 6.07538 6.13763 6.14711 6.23704 6.39490 6.57899 6.67643 6.96846 7.18473 7.35384 7.83244 7.86400 8.09240 8.17221 8.53129 9.08112 9.64039 11.11131 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.025117 B = 0.006265 C = 0.005721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.503350 B = 4467.969012 C = 4893.156371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.493 4.493 8 H 0.068 0.932 9 C 0.198 3.802 10 N -0.498 5.498 11 C 0.093 3.907 12 C -0.091 4.091 13 C -0.058 4.058 14 C -0.175 4.175 15 C 0.103 3.897 16 N -0.485 5.485 17 C 0.190 3.810 18 Cl -0.014 7.014 19 C 0.027 3.973 20 C -0.183 4.183 21 C -0.149 4.149 22 H 0.259 0.741 23 H -0.001 1.001 24 H 0.026 0.974 25 H 0.087 0.913 26 H 0.038 0.962 27 H 0.137 0.863 28 H 0.136 0.864 29 H 0.158 0.842 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.892 -14.634 -1.768 15.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.147 4.147 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.532 4.532 8 H 0.086 0.914 9 C 0.073 3.927 10 N -0.223 5.223 11 C -0.035 4.035 12 C -0.094 4.094 13 C -0.084 4.084 14 C -0.196 4.196 15 C -0.054 4.054 16 N -0.196 5.196 17 C 0.026 3.974 18 Cl 0.015 6.985 19 C -0.082 4.082 20 C -0.221 4.221 21 C -0.186 4.186 22 H 0.069 0.931 23 H 0.017 0.983 24 H 0.044 0.956 25 H 0.105 0.895 26 H 0.056 0.944 27 H 0.154 0.846 28 H 0.154 0.846 29 H 0.175 0.825 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.597 -14.246 -0.577 15.710 hybrid contribution -0.809 0.832 -1.237 1.696 sum 5.788 -13.414 -1.814 14.722 Atomic orbital electron populations 1.69961 1.05998 1.26497 1.51700 1.24958 0.94800 0.99128 0.95786 0.86521 0.80183 0.83799 0.77423 1.19652 1.21228 1.21157 1.21224 0.93601 0.89462 1.48873 0.91430 1.19741 0.89678 0.87140 0.96098 1.61913 1.40371 1.01940 1.18051 1.20986 0.91856 0.89419 1.01254 1.20669 0.98644 0.97082 0.93048 1.21462 0.96358 0.92686 0.97911 1.22101 0.97495 1.00700 0.99256 1.22534 0.98262 0.95067 0.89551 1.67043 1.16775 1.03491 1.32279 1.21582 0.93286 0.91786 0.90772 1.98435 1.94393 1.51644 1.54033 1.22071 0.90687 1.04699 0.90758 1.22954 0.98133 0.99293 1.01689 1.22994 1.02102 0.92288 1.01214 0.93122 0.98343 0.95551 0.89503 0.94373 0.84560 0.84644 0.82500 0.91376 0.89568 0.90385 0.90086 0.86934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.36 13.28 55.43 0.74 -25.62 16 2 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 7 C -0.49 -13.31 8.05 -34.44 -0.28 -13.59 16 8 H 0.07 1.83 5.72 -52.49 -0.30 1.53 16 9 C 0.20 4.92 4.76 -4.98 -0.02 4.89 16 10 N -0.50 -10.17 4.51 -229.53 -1.04 -11.20 16 11 C 0.09 1.62 4.51 -4.98 -0.02 1.59 16 12 C -0.09 -1.40 4.50 -104.44 -0.47 -1.87 16 13 C -0.06 -0.71 9.23 -39.28 -0.36 -1.08 16 14 C -0.18 -1.85 10.11 -39.44 -0.40 -2.25 16 15 C 0.10 1.22 11.18 -17.55 -0.20 1.02 16 16 N -0.48 -7.47 10.34 -10.36 -0.11 -7.58 16 17 C 0.19 3.13 7.27 -17.45 -0.13 3.01 16 18 Cl -0.01 -0.24 27.71 -51.86 -1.44 -1.68 16 19 C 0.03 0.51 4.45 -67.71 -0.30 0.20 16 20 C -0.18 -2.99 9.37 -26.73 -0.25 -3.24 16 21 C -0.15 -2.78 9.44 -26.73 -0.25 -3.03 16 22 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 23 H 0.00 -0.04 8.01 -51.93 -0.42 -0.45 16 24 H 0.03 0.70 7.67 -51.93 -0.40 0.30 16 25 H 0.09 1.55 6.98 -51.93 -0.36 1.19 16 26 H 0.04 0.61 7.94 -51.93 -0.41 0.20 16 27 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 28 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 29 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.11 2.39 5.80 -51.93 -0.30 2.09 16 LS Contribution 302.20 15.07 4.55 4.55 Total: -1.00 -29.80 302.20 -9.37 -39.17 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -4.28 Total: -1.24 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -2.78 Total: -12.93 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: -0.41 Total: -44.40 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -1.44 Total: -1.68 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.80 -9.37 -39.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052709858.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.737 kcal (2) G-P(sol) polarization free energy of solvation -29.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds