Wall clock time and date at job start Mon Mar 30 2020 08:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99920 * 2 1 4 4 H 1.48498 * 109.47189 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47067 * 299.99382 * 3 2 1 6 6 H 1.48504 * 109.47338 * 59.99395 * 3 2 1 7 7 C 1.37876 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00240 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00030 * 0.02562 * 7 2 1 10 10 N 1.46894 * 109.47194 * 173.59535 * 9 7 2 11 11 C 1.46895 * 111.00077 * 160.98754 * 10 9 7 12 12 C 1.50701 * 109.47628 * 195.49742 * 11 10 9 13 13 C 1.38610 * 120.42232 * 258.46100 * 12 11 10 14 14 C 1.38676 * 118.43320 * 179.77565 * 13 12 11 15 15 C 1.38191 * 119.19012 * 0.47262 * 14 13 12 16 16 N 1.31873 * 120.78076 * 359.76480 * 15 14 13 17 17 C 1.31972 * 121.70996 * 0.02562 * 16 15 14 18 18 Cl 1.73602 * 119.63567 * 179.97438 * 17 16 15 19 19 C 1.46895 * 111.00435 * 284.94290 * 10 9 7 20 20 C 1.53000 * 117.50082 * 143.02604 * 19 10 9 21 21 C 1.52993 * 60.00415 * 252.51286 * 20 19 10 22 22 H 0.97000 * 120.00040 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.46940 * 53.59968 * 9 7 2 24 24 H 1.08994 * 109.47041 * 293.60102 * 9 7 2 25 25 H 1.09004 * 109.47052 * 315.49339 * 11 10 9 26 26 H 1.08999 * 109.47379 * 75.49422 * 11 10 9 27 27 H 1.07999 * 120.78611 * 0.02562 * 13 12 11 28 28 H 1.07995 * 120.40219 * 180.23562 * 14 13 12 29 29 H 1.08000 * 119.60521 * 179.79096 * 15 14 13 30 30 H 1.08993 * 115.55241 * 288.73827 * 19 10 9 31 31 H 1.09005 * 117.50066 * 0.02562 * 20 19 10 32 32 H 1.08999 * 117.50157 * 145.01975 * 20 19 10 33 33 H 1.09001 * 117.50166 * 252.51572 * 21 20 19 34 34 H 1.09003 * 117.52098 * 107.47594 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.1982 -3.6114 -0.1533 11 6 1.5975 -4.8787 0.2835 12 6 2.6808 -5.9086 0.4751 13 6 2.9047 -6.8795 -0.4885 14 6 3.9154 -7.8039 -0.2721 15 6 4.6547 -7.7338 0.8934 16 7 4.4114 -6.7995 1.7917 17 6 3.4607 -5.9008 1.6179 18 17 3.1864 -4.6949 2.8361 19 6 2.6783 -3.7063 -1.5384 20 6 4.1403 -4.1028 -1.7537 21 6 3.6933 -2.6618 -2.0074 22 1 -0.4850 0.8400 -0.0004 23 1 0.5416 -2.5091 -0.8269 24 1 0.7127 -2.6079 0.9420 25 1 1.0711 -4.7256 1.2257 26 1 0.8944 -5.2274 -0.4729 27 1 2.3087 -6.9127 -1.3886 28 1 4.1197 -8.5716 -1.0036 29 1 5.4412 -8.4525 1.0704 30 1 1.9481 -4.0606 -2.2658 31 1 4.7458 -4.2937 -0.8676 32 1 4.3721 -4.7183 -2.6229 33 1 3.6308 -2.3292 -3.0435 34 1 4.0043 -1.9040 -1.2883 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052709858.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:22 Heat of formation + Delta-G solvation = 46.022741 kcal Electronic energy + Delta-G solvation = -18098.414807 eV Core-core repulsion = 15250.468461 eV Total energy + Delta-G solvation = -2847.946346 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.24018 -39.11468 -37.42300 -35.52326 -34.83710 -33.31513 -32.11245 -29.09700 -26.48922 -24.53927 -24.08742 -23.13047 -22.92750 -21.06838 -18.66932 -18.14977 -17.65534 -16.81743 -16.52320 -15.98144 -15.85857 -15.63422 -14.90294 -14.79131 -14.32155 -13.99759 -13.79565 -13.41557 -13.14406 -12.89618 -12.64877 -12.57626 -12.40729 -12.31237 -11.96787 -11.77491 -11.22487 -11.15833 -10.78511 -10.64122 -10.51887 -10.49823 -9.73171 -8.99851 -8.13597 -6.19680 0.04139 0.28311 1.06403 1.39483 1.41549 1.53470 2.42354 2.71280 3.08226 3.19300 3.31847 3.53888 3.82416 3.98356 4.08598 4.20094 4.26343 4.34698 4.47041 4.53953 4.69767 4.75643 4.86139 4.90535 5.12099 5.15085 5.19587 5.29251 5.37962 5.47728 5.66144 5.79186 6.13212 6.44640 6.65043 6.82938 6.95822 7.47824 8.97023 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.025117 B = 0.006265 C = 0.005721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.503350 B = 4467.969012 C = 4893.156371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.002 3.998 3 Si 0.956 3.044 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.284 1.284 7 C -0.497 4.497 8 H 0.064 0.936 9 C 0.215 3.785 10 N -0.504 5.504 11 C 0.097 3.903 12 C -0.105 4.105 13 C -0.055 4.055 14 C -0.153 4.153 15 C 0.103 3.897 16 N -0.511 5.511 17 C 0.168 3.832 18 Cl -0.046 7.046 19 C 0.011 3.989 20 C -0.141 4.141 21 C -0.167 4.167 22 H 0.261 0.739 23 H -0.029 1.029 24 H -0.001 1.001 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.160 0.840 28 H 0.182 0.818 29 H 0.194 0.806 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.116 0.884 33 H 0.097 0.903 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.746 -16.791 -3.663 18.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.195 4.195 3 Si 0.782 3.218 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.210 1.210 7 C -0.535 4.535 8 H 0.082 0.918 9 C 0.090 3.910 10 N -0.228 5.228 11 C -0.031 4.031 12 C -0.109 4.109 13 C -0.082 4.082 14 C -0.173 4.173 15 C -0.054 4.054 16 N -0.223 5.223 17 C 0.005 3.995 18 Cl -0.018 7.018 19 C -0.098 4.098 20 C -0.179 4.179 21 C -0.204 4.204 22 H 0.069 0.931 23 H -0.012 1.012 24 H 0.017 0.983 25 H 0.087 0.913 26 H 0.068 0.932 27 H 0.177 0.823 28 H 0.200 0.800 29 H 0.211 0.789 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.134 0.866 33 H 0.115 0.885 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.467 -16.420 -2.471 18.639 hybrid contribution -1.326 1.321 -0.685 1.994 sum 7.141 -15.098 -3.157 16.998 Atomic orbital electron populations 1.70081 1.07475 1.27341 1.52988 1.25756 0.95556 1.02559 0.95616 0.85529 0.79134 0.79697 0.77470 1.18985 1.20521 1.21001 1.21492 0.93543 0.90560 1.47910 0.91753 1.19326 0.89574 0.88654 0.93463 1.61770 1.39136 1.02193 1.19729 1.20911 0.92961 0.88721 1.00550 1.20469 0.98509 0.97878 0.94002 1.21790 0.96888 0.91818 0.97659 1.22566 0.95255 1.00243 0.99188 1.23290 0.98737 0.94225 0.89161 1.67009 1.16894 1.04350 1.34000 1.21558 0.94821 0.92353 0.90776 1.98414 1.94680 1.53227 1.55476 1.22187 0.92084 1.05748 0.89797 1.22886 0.95298 0.97508 1.02167 1.22951 1.03250 0.92920 1.01284 0.93054 1.01157 0.98311 0.91341 0.93154 0.82253 0.80032 0.78893 0.90455 0.90899 0.86609 0.88463 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.40 13.28 21.45 0.28 -56.11 16 2 C 0.00 0.12 5.46 84.65 0.46 0.59 16 3 Si 0.96 44.95 29.54 68.60 2.03 46.97 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 7 C -0.50 -27.66 8.05 25.60 0.21 -27.46 16 8 H 0.06 3.58 5.72 -2.91 -0.02 3.56 16 9 C 0.22 11.22 4.76 85.56 0.41 11.63 16 10 N -0.50 -20.97 4.51 -880.09 -3.97 -24.94 16 11 C 0.10 3.39 4.51 85.56 0.39 3.78 16 12 C -0.10 -3.10 4.50 -19.75 -0.09 -3.19 16 13 C -0.06 -1.16 9.23 22.46 0.21 -0.95 16 14 C -0.15 -2.41 10.11 22.36 0.23 -2.19 16 15 C 0.10 2.02 11.18 84.68 0.95 2.96 16 16 N -0.51 -14.88 10.34 -186.69 -1.93 -16.81 16 17 C 0.17 5.48 7.27 84.70 0.62 6.09 16 18 Cl -0.05 -1.71 27.71 -2.72 -0.08 -1.78 16 19 C 0.01 0.39 4.45 44.92 0.20 0.59 16 20 C -0.14 -4.23 9.37 30.59 0.29 -3.94 16 21 C -0.17 -6.07 9.44 30.59 0.29 -5.78 16 22 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 23 H -0.03 -1.66 8.01 -2.38 -0.02 -1.68 16 24 H 0.00 -0.07 7.67 -2.39 -0.02 -0.08 16 25 H 0.07 2.60 6.98 -2.38 -0.02 2.58 16 26 H 0.05 1.60 7.94 -2.39 -0.02 1.58 16 27 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 28 H 0.18 1.27 8.06 -2.91 -0.02 1.24 16 29 H 0.19 2.25 8.06 -2.91 -0.02 2.23 16 30 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 32 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 34 H 0.08 3.48 5.80 -2.39 -0.01 3.46 16 Total: -1.00 -67.69 302.20 1.58 -66.11 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: 1.10 Total: 4.42 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: 4.14 Total: -17.87 kcal Atomic # 7 Polarization: -92.24 SS G_CDS: -5.62 Total: -97.86 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -0.08 Total: -1.78 kcal Total: -67.69 1.58 -66.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052709858.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.134 kcal (2) G-P(sol) polarization free energy of solvation -67.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds