Wall clock time and date at job start Mon Mar 30 2020 08:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99861 * 2 1 4 4 H 1.48503 * 109.47067 * 240.00141 * 3 2 1 5 5 H 1.48509 * 109.47004 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47597 * 119.99805 * 3 2 1 7 7 C 1.37870 * 120.00583 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00509 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99762 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47137 * 184.65349 * 9 7 2 11 11 C 1.46899 * 111.00120 * 162.85677 * 10 9 7 12 12 C 1.50696 * 109.47202 * 190.00009 * 11 10 9 13 13 C 1.38706 * 120.78584 * 89.99715 * 12 11 10 14 14 C 1.38149 * 119.19498 * 179.97438 * 13 12 11 15 15 N 1.31899 * 120.78316 * 0.02562 * 14 13 12 16 16 C 1.31950 * 121.70851 * 359.97438 * 15 14 13 17 17 Cl 1.73598 * 119.63733 * 179.72505 * 16 15 14 18 18 C 1.38402 * 120.72812 * 359.97438 * 16 15 14 19 19 C 1.46902 * 110.99857 * 286.80907 * 10 9 7 20 20 C 1.53006 * 117.49840 * 3.45500 * 19 10 9 21 21 C 1.53003 * 117.49700 * 294.83391 * 19 10 9 22 22 H 0.96992 * 120.00068 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.47113 * 64.64731 * 9 7 2 24 24 H 1.09004 * 109.46886 * 304.64556 * 9 7 2 25 25 H 1.09004 * 109.47244 * 69.99530 * 11 10 9 26 26 H 1.09000 * 109.46770 * 309.99703 * 11 10 9 27 27 H 1.08003 * 120.40498 * 359.95647 * 13 12 11 28 28 H 1.08006 * 119.60553 * 179.97438 * 14 13 12 29 29 H 1.07998 * 120.42243 * 180.02562 * 18 16 15 30 30 H 1.09001 * 115.54977 * 149.16673 * 19 10 9 31 31 H 1.09001 * 117.49621 * 0.02562 * 20 19 10 32 32 H 1.09000 * 117.49963 * 145.02078 * 20 19 10 33 33 H 1.09001 * 117.49804 * 214.97912 * 21 19 10 34 34 H 1.08995 * 117.50113 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2018 -3.6133 0.1135 11 6 1.5192 -4.8485 0.5213 12 6 2.5438 -5.8991 0.8638 13 6 3.0296 -6.0220 2.1572 14 6 3.9681 -6.9970 2.4348 15 7 4.4025 -7.8051 1.4872 16 6 3.9633 -7.7177 0.2460 17 17 4.5774 -8.8045 -0.9604 18 6 3.0221 -6.7658 -0.1057 19 6 2.9363 -3.8082 -1.1437 20 6 2.6682 -2.8183 -2.2792 21 6 2.1339 -4.2492 -2.3695 22 1 -0.4850 0.8400 0.0004 23 1 0.6888 -2.5940 -0.9283 24 1 0.5632 -2.5215 0.8458 25 1 0.8931 -5.2047 -0.2968 26 1 0.8977 -4.6489 1.3942 27 1 2.6786 -5.3632 2.9378 28 1 4.3511 -7.0983 3.4396 29 1 2.6657 -6.6990 -1.1230 30 1 3.9506 -4.1938 -1.0407 31 1 1.9471 -2.0224 -2.0932 32 1 3.5063 -2.5524 -2.9235 33 1 2.6205 -4.9247 -3.0732 34 1 1.0612 -4.3952 -2.2431 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052709861.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:14:17 Heat of formation + Delta-G solvation = 63.960927 kcal Electronic energy + Delta-G solvation = -17778.789257 eV Core-core repulsion = 14931.620769 eV Total energy + Delta-G solvation = -2847.168488 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.26614 -38.30576 -36.62192 -33.99948 -33.01769 -31.46281 -30.94362 -27.72120 -25.25573 -23.53679 -22.84518 -22.10366 -21.33608 -19.01025 -16.85735 -16.70008 -16.15999 -15.94444 -15.66129 -14.91022 -14.40039 -14.15287 -13.99859 -13.59407 -12.95588 -12.47216 -12.15320 -11.83542 -11.71498 -11.52713 -11.33256 -11.15910 -10.85893 -10.75236 -10.36024 -10.04408 -9.96017 -9.63808 -9.57859 -9.43273 -9.25708 -8.91651 -8.50334 -7.40130 -6.09574 -4.09625 1.00677 1.21648 1.82617 3.30068 3.34602 3.37762 3.67875 4.36543 4.45153 4.49005 4.73805 4.87190 4.98764 5.13308 5.25596 5.28808 5.53456 5.57341 5.61871 5.67901 5.79840 5.90099 6.00269 6.12444 6.43356 6.51310 6.56668 6.60951 6.99765 7.08283 7.27638 7.72371 7.73539 7.96466 8.05403 8.40074 8.97405 9.53217 11.00628 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.029931 B = 0.004789 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.245385 B = 5845.296276 C = 6236.284533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.498 4.498 8 H 0.064 0.936 9 C 0.187 3.813 10 N -0.498 5.498 11 C 0.087 3.913 12 C -0.003 4.003 13 C -0.150 4.150 14 C 0.112 3.888 15 N -0.489 5.489 16 C 0.170 3.830 17 Cl -0.044 7.044 18 C -0.145 4.145 19 C 0.033 3.967 20 C -0.168 4.168 21 C -0.232 4.232 22 H 0.262 0.738 23 H -0.001 1.001 24 H 0.033 0.967 25 H 0.044 0.956 26 H 0.086 0.914 27 H 0.144 0.856 28 H 0.163 0.837 29 H 0.142 0.858 30 H 0.102 0.898 31 H 0.135 0.865 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.446 -13.096 0.219 13.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.536 4.536 8 H 0.082 0.918 9 C 0.063 3.937 10 N -0.221 5.221 11 C -0.040 4.040 12 C -0.011 4.011 13 C -0.170 4.170 14 C -0.045 4.045 15 N -0.200 5.200 16 C 0.006 3.994 17 Cl -0.016 7.016 18 C -0.166 4.166 19 C -0.076 4.076 20 C -0.205 4.205 21 C -0.271 4.271 22 H 0.072 0.928 23 H 0.017 0.983 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.105 0.895 27 H 0.162 0.838 28 H 0.180 0.820 29 H 0.160 0.840 30 H 0.120 0.880 31 H 0.152 0.848 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.284 -13.560 0.701 14.570 hybrid contribution -0.628 1.240 -0.962 1.690 sum 4.656 -12.321 -0.261 13.174 Atomic orbital electron populations 1.69933 1.06022 1.27008 1.50915 1.24955 0.94825 0.99217 0.95546 0.86576 0.79450 0.82768 0.78746 1.20220 1.21422 1.20193 1.21041 0.93609 0.89392 1.49599 0.91772 1.19906 0.90208 0.87270 0.96322 1.62267 1.29210 1.02869 1.27745 1.21113 0.92604 0.89404 1.00897 1.20389 0.94940 0.93382 0.92419 1.22191 0.98048 0.99089 0.97697 1.22601 0.93679 0.90576 0.97611 1.66924 1.26455 1.26570 1.00090 1.21532 0.95178 0.92952 0.89690 1.98385 1.87315 1.63700 1.52164 1.21788 0.97958 0.95346 1.01539 1.22544 0.97285 1.03799 0.83994 1.23531 1.03938 0.93534 0.99493 1.23365 1.00170 0.99900 1.03655 0.92805 0.98331 0.94934 0.93809 0.89546 0.83786 0.82022 0.84041 0.87980 0.84752 0.90047 0.89923 0.89581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.34 13.29 55.43 0.74 -24.61 16 2 C 0.06 1.50 5.46 -17.82 -0.10 1.40 16 3 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.50 -13.02 6.85 -34.44 -0.24 -13.25 16 8 H 0.06 1.71 7.80 -52.49 -0.41 1.30 16 9 C 0.19 4.46 4.27 -4.97 -0.02 4.44 16 10 N -0.50 -9.83 4.66 -229.51 -1.07 -10.90 16 11 C 0.09 1.42 5.05 -4.98 -0.03 1.39 16 12 C 0.00 -0.04 5.05 -104.33 -0.53 -0.56 16 13 C -0.15 -1.94 9.82 -39.44 -0.39 -2.33 16 14 C 0.11 1.38 11.18 -17.56 -0.20 1.18 16 15 N -0.49 -7.00 10.34 -10.36 -0.11 -7.11 16 16 C 0.17 2.40 7.27 -17.44 -0.13 2.28 16 17 Cl -0.04 -0.56 29.11 -51.86 -1.51 -2.07 16 18 C -0.14 -2.01 8.78 -39.40 -0.35 -2.35 16 19 C 0.03 0.61 4.83 -67.71 -0.33 0.28 16 20 C -0.17 -3.18 8.87 -26.73 -0.24 -3.42 16 21 C -0.23 -3.79 8.83 -26.73 -0.24 -4.03 16 22 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 23 H 0.00 -0.02 6.03 -51.93 -0.31 -0.34 16 24 H 0.03 0.84 7.79 -51.93 -0.40 0.43 16 25 H 0.04 0.69 6.81 -51.93 -0.35 0.34 16 26 H 0.09 1.36 7.81 -51.93 -0.41 0.96 16 27 H 0.14 1.66 8.06 -52.48 -0.42 1.24 16 28 H 0.16 1.46 8.06 -52.48 -0.42 1.04 16 29 H 0.14 1.85 7.61 -52.49 -0.40 1.45 16 30 H 0.10 1.82 8.13 -51.93 -0.42 1.40 16 31 H 0.13 3.03 4.91 -51.93 -0.25 2.78 16 32 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.09 1.46 7.14 -51.93 -0.37 1.09 16 LS Contribution 299.26 15.07 4.51 4.51 Total: -1.00 -28.03 299.26 -9.38 -37.41 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -4.16 Total: 1.86 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -2.76 Total: -14.98 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: -0.44 Total: -42.62 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.51 Total: -2.07 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.03 -9.38 -37.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052709861.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.370 kcal (2) G-P(sol) polarization free energy of solvation -28.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds