Wall clock time and date at job start Mon Mar 30 2020 08:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99861 * 2 1 4 4 H 1.48503 * 109.47067 * 240.00141 * 3 2 1 5 5 H 1.48509 * 109.47004 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47597 * 119.99805 * 3 2 1 7 7 C 1.37870 * 120.00583 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00509 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99762 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47137 * 184.65349 * 9 7 2 11 11 C 1.46899 * 111.00120 * 162.85677 * 10 9 7 12 12 C 1.50696 * 109.47202 * 190.00009 * 11 10 9 13 13 C 1.38706 * 120.78584 * 89.99715 * 12 11 10 14 14 C 1.38149 * 119.19498 * 179.97438 * 13 12 11 15 15 N 1.31899 * 120.78316 * 0.02562 * 14 13 12 16 16 C 1.31950 * 121.70851 * 359.97438 * 15 14 13 17 17 Cl 1.73598 * 119.63733 * 179.72505 * 16 15 14 18 18 C 1.38402 * 120.72812 * 359.97438 * 16 15 14 19 19 C 1.46902 * 110.99857 * 286.80907 * 10 9 7 20 20 C 1.53006 * 117.49840 * 3.45500 * 19 10 9 21 21 C 1.53003 * 117.49700 * 294.83391 * 19 10 9 22 22 H 0.96992 * 120.00068 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.47113 * 64.64731 * 9 7 2 24 24 H 1.09004 * 109.46886 * 304.64556 * 9 7 2 25 25 H 1.09004 * 109.47244 * 69.99530 * 11 10 9 26 26 H 1.09000 * 109.46770 * 309.99703 * 11 10 9 27 27 H 1.08003 * 120.40498 * 359.95647 * 13 12 11 28 28 H 1.08006 * 119.60553 * 179.97438 * 14 13 12 29 29 H 1.07998 * 120.42243 * 180.02562 * 18 16 15 30 30 H 1.09001 * 115.54977 * 149.16673 * 19 10 9 31 31 H 1.09001 * 117.49621 * 0.02562 * 20 19 10 32 32 H 1.09000 * 117.49963 * 145.02078 * 20 19 10 33 33 H 1.09001 * 117.49804 * 214.97912 * 21 19 10 34 34 H 1.08995 * 117.50113 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2018 -3.6133 0.1135 11 6 1.5192 -4.8485 0.5213 12 6 2.5438 -5.8991 0.8638 13 6 3.0296 -6.0220 2.1572 14 6 3.9681 -6.9970 2.4348 15 7 4.4025 -7.8051 1.4872 16 6 3.9633 -7.7177 0.2460 17 17 4.5774 -8.8045 -0.9604 18 6 3.0221 -6.7658 -0.1057 19 6 2.9363 -3.8082 -1.1437 20 6 2.6682 -2.8183 -2.2792 21 6 2.1339 -4.2492 -2.3695 22 1 -0.4850 0.8400 0.0004 23 1 0.6888 -2.5940 -0.9283 24 1 0.5632 -2.5215 0.8458 25 1 0.8931 -5.2047 -0.2968 26 1 0.8977 -4.6489 1.3942 27 1 2.6786 -5.3632 2.9378 28 1 4.3511 -7.0983 3.4396 29 1 2.6657 -6.6990 -1.1230 30 1 3.9506 -4.1938 -1.0407 31 1 1.9471 -2.0224 -2.0932 32 1 3.5063 -2.5524 -2.9235 33 1 2.6205 -4.9247 -3.0732 34 1 1.0612 -4.3952 -2.2431 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052709861.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:14:17 Heat of formation + Delta-G solvation = 47.643497 kcal Electronic energy + Delta-G solvation = -17779.496833 eV Core-core repulsion = 14931.620769 eV Total energy + Delta-G solvation = -2847.876065 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.35754 -39.76748 -37.63098 -35.26040 -34.95439 -32.95364 -31.96602 -29.45618 -26.73773 -24.75637 -24.43254 -23.42940 -22.68345 -20.53088 -18.45777 -17.91047 -17.68097 -17.28929 -16.74101 -16.63402 -15.81073 -15.44067 -15.15055 -15.04015 -14.41498 -13.90612 -13.71388 -13.37903 -13.02314 -12.76436 -12.65934 -12.60154 -12.52403 -12.30502 -11.97934 -11.78176 -11.51039 -11.30745 -10.93807 -10.70664 -10.59960 -10.53282 -9.93030 -8.99245 -8.15215 -6.21216 -0.01729 0.14159 0.80956 1.44211 1.45062 1.52911 2.42645 2.62886 3.02979 3.16272 3.32671 3.52388 3.67922 3.92470 4.06466 4.12376 4.16461 4.18568 4.25615 4.55608 4.64290 4.72937 4.79623 4.86629 5.04674 5.07379 5.21641 5.29299 5.37033 5.55621 5.59591 5.70829 6.08559 6.35654 6.57870 6.72102 6.91134 7.45406 8.94557 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.029931 B = 0.004789 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.245385 B = 5845.296276 C = 6236.284533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.007 3.993 3 Si 0.957 3.043 4 H -0.270 1.270 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.499 4.499 8 H 0.057 0.943 9 C 0.205 3.795 10 N -0.507 5.507 11 C 0.091 3.909 12 C -0.014 4.014 13 C -0.150 4.150 14 C 0.117 3.883 15 N -0.504 5.504 16 C 0.160 3.840 17 Cl -0.035 7.035 18 C -0.144 4.144 19 C 0.030 3.970 20 C -0.186 4.186 21 C -0.202 4.202 22 H 0.262 0.738 23 H -0.020 1.020 24 H 0.007 0.993 25 H 0.047 0.953 26 H 0.085 0.915 27 H 0.157 0.843 28 H 0.196 0.804 29 H 0.148 0.852 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.831 -13.977 0.322 15.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.191 4.191 3 Si 0.782 3.218 4 H -0.195 1.195 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.538 4.538 8 H 0.075 0.925 9 C 0.080 3.920 10 N -0.230 5.230 11 C -0.036 4.036 12 C -0.023 4.023 13 C -0.170 4.170 14 C -0.040 4.040 15 N -0.216 5.216 16 C -0.003 4.003 17 Cl -0.007 7.007 18 C -0.166 4.166 19 C -0.079 4.079 20 C -0.223 4.223 21 C -0.241 4.241 22 H 0.071 0.929 23 H -0.003 1.003 24 H 0.025 0.975 25 H 0.065 0.935 26 H 0.103 0.897 27 H 0.174 0.826 28 H 0.213 0.787 29 H 0.166 0.834 30 H 0.131 0.869 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.133 0.867 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.683 -14.462 0.796 15.951 hybrid contribution -1.045 1.432 -0.983 2.027 sum 5.637 -13.029 -0.186 14.198 Atomic orbital electron populations 1.70045 1.07414 1.27678 1.52300 1.25699 0.95525 1.02447 0.95400 0.85623 0.78269 0.78941 0.78920 1.19535 1.21235 1.19722 1.21247 0.93297 0.90620 1.48635 0.92463 1.19502 0.90062 0.88352 0.94105 1.62108 1.28481 1.03489 1.28926 1.21070 0.93173 0.88459 1.00891 1.20223 0.95202 0.93381 0.93450 1.22396 0.97866 0.99357 0.97425 1.23127 0.92796 0.89421 0.98606 1.67005 1.26936 1.27224 1.00466 1.21662 0.95378 0.93276 0.90008 1.98384 1.87168 1.63335 1.51777 1.21799 0.97863 0.95188 1.01715 1.22567 0.97836 1.03871 0.83643 1.23378 1.04114 0.93798 1.01041 1.23355 0.99731 0.98348 1.02704 0.92880 1.00272 0.97482 0.93472 0.89661 0.82563 0.78717 0.83401 0.86912 0.88740 0.88322 0.86736 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.75 13.29 21.44 0.28 -53.46 16 2 C 0.01 0.39 5.46 84.65 0.46 0.85 16 3 Si 0.96 43.07 29.54 68.60 2.03 45.10 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.50 -26.54 6.85 25.60 0.18 -26.36 16 8 H 0.06 3.07 7.80 -2.91 -0.02 3.04 16 9 C 0.21 10.03 4.27 85.56 0.37 10.39 16 10 N -0.51 -19.93 4.66 -880.04 -4.10 -24.04 16 11 C 0.09 2.91 5.05 85.56 0.43 3.34 16 12 C -0.01 -0.38 5.05 -19.68 -0.10 -0.48 16 13 C -0.15 -3.58 9.82 22.36 0.22 -3.36 16 14 C 0.12 2.57 11.18 84.66 0.95 3.51 16 15 N -0.50 -13.30 10.34 -186.69 -1.93 -15.23 16 16 C 0.16 4.19 7.27 84.71 0.62 4.81 16 17 Cl -0.04 -0.82 29.11 -2.72 -0.08 -0.90 16 18 C -0.14 -3.73 8.78 22.39 0.20 -3.53 16 19 C 0.03 1.06 4.83 44.92 0.22 1.28 16 20 C -0.19 -6.96 8.87 30.60 0.27 -6.69 16 21 C -0.20 -6.30 8.83 30.60 0.27 -6.03 16 22 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 23 H -0.02 -1.06 6.03 -2.39 -0.01 -1.07 16 24 H 0.01 0.38 7.79 -2.39 -0.02 0.36 16 25 H 0.05 1.46 6.81 -2.38 -0.02 1.45 16 26 H 0.09 2.69 7.81 -2.39 -0.02 2.68 16 27 H 0.16 3.29 8.06 -2.91 -0.02 3.26 16 28 H 0.20 2.84 8.06 -2.91 -0.02 2.81 16 29 H 0.15 3.54 7.61 -2.91 -0.02 3.52 16 30 H 0.11 3.79 8.13 -2.39 -0.02 3.77 16 31 H 0.09 4.38 4.91 -2.39 -0.01 4.36 16 32 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 33 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 34 H 0.08 2.58 7.14 -2.39 -0.02 2.56 16 Total: -1.00 -60.07 299.26 1.37 -58.70 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 1.10 Total: 12.10 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: 4.07 Total: -22.27 kcal Atomic # 7 Polarization: -86.98 SS G_CDS: -5.75 Total: -92.73 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -0.08 Total: -0.90 kcal Total: -60.07 1.37 -58.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052709861.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.341 kcal (2) G-P(sol) polarization free energy of solvation -60.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds