Wall clock time and date at job start Mon Mar 30 2020 07:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30654 * 1 3 3 Si 1.86791 * 120.00125 * 2 1 4 4 H 1.48509 * 109.47074 * 274.97634 * 3 2 1 5 5 H 1.48491 * 109.47346 * 34.97560 * 3 2 1 6 6 H 1.48504 * 109.47529 * 154.98022 * 3 2 1 7 7 C 1.40242 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99921 * 186.04867 * 7 2 1 9 9 C 1.40388 * 120.00069 * 6.04075 * 7 2 1 10 10 N 1.33255 * 126.54646 * 354.66970 * 9 7 2 11 11 C 1.33443 * 107.23566 * 180.11167 * 10 9 7 12 12 C 1.48299 * 125.67536 * 179.90102 * 11 10 9 13 13 C 1.40377 * 119.25002 * 179.71363 * 12 11 10 14 14 C 1.36326 * 119.83692 * 179.97438 * 13 12 11 15 15 C 1.40912 * 118.28584 * 359.97438 * 14 13 12 16 16 C 1.40363 * 121.24558 * 180.27830 * 15 14 13 17 17 C 1.36183 * 119.65125 * 180.27565 * 16 15 14 18 18 C 1.39343 * 120.87623 * 359.44834 * 17 16 15 19 19 C 1.36075 * 121.05742 * 0.27884 * 18 17 16 20 20 C 1.40685 * 119.74996 * 0.02562 * 19 18 17 21 21 N 1.31916 * 119.24851 * 359.73355 * 12 11 10 22 22 N 1.32045 * 108.64525 * 359.63004 * 11 10 9 23 23 N 1.28850 * 109.18956 * 0.23169 * 22 11 10 24 24 H 0.97001 * 125.98953 * 180.02562 * 23 22 11 25 25 H 0.96998 * 120.00009 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.08176 * 359.97438 * 13 12 11 27 27 H 1.08000 * 120.85575 * 180.02562 * 14 13 12 28 28 H 1.08005 * 120.17391 * 359.97438 * 16 15 14 29 29 H 1.07998 * 119.55817 * 179.72400 * 17 16 15 30 30 H 1.08002 * 119.47325 * 180.30377 * 18 17 16 31 31 H 1.08002 * 120.12303 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6176 0.0000 4 1 2.3829 2.1071 -1.3949 5 1 1.4946 2.6199 0.8025 6 1 3.5868 1.4120 0.5921 7 6 2.0077 -1.2145 0.0005 8 1 3.0832 -1.2171 0.0991 9 6 1.3116 -2.4270 -0.1269 10 7 -0.0114 -2.5831 -0.1563 11 6 -0.2527 -3.8891 -0.2857 12 6 -1.5938 -4.5178 -0.3591 13 6 -1.6915 -5.9109 -0.5017 14 6 -2.9184 -6.5013 -0.5699 15 6 -4.0603 -5.6793 -0.4930 16 6 -5.3534 -6.2221 -0.5508 17 6 -6.4343 -5.3969 -0.4791 18 6 -6.2746 -4.0199 -0.3373 19 6 -5.0361 -3.4599 -0.2722 20 6 -3.8947 -4.2788 -0.3492 21 7 -2.6679 -3.7551 -0.2892 22 7 0.9015 -4.5280 -0.3433 23 7 1.8628 -3.6750 -0.2503 24 1 2.8106 -3.8806 -0.2655 25 1 -0.4850 0.8400 -0.0004 26 1 -0.7969 -6.5134 -0.5574 27 1 -3.0127 -7.5716 -0.6793 28 1 -5.4904 -7.2882 -0.6566 29 1 -7.4286 -5.8157 -0.5283 30 1 -7.1477 -3.3870 -0.2778 31 1 -4.9298 -2.3908 -0.1619 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071196985.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:54:16 Heat of formation + Delta-G solvation = 131.375129 kcal Electronic energy + Delta-G solvation = -18382.553190 eV Core-core repulsion = 15437.200507 eV Total energy + Delta-G solvation = -2945.352683 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.086 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.05818 -40.26630 -36.78056 -33.66375 -33.16535 -31.74294 -30.44351 -29.66260 -29.14851 -25.92182 -24.18263 -23.29507 -21.78286 -20.71556 -20.14166 -17.69761 -17.44042 -16.91114 -16.26876 -15.54350 -14.77071 -14.43408 -14.35565 -14.18758 -13.70973 -13.57634 -13.22619 -12.80344 -12.52542 -11.71393 -11.55232 -11.37543 -11.27488 -11.17831 -10.81127 -10.37326 -10.24488 -9.95415 -9.51692 -9.05965 -8.88326 -8.25643 -8.08480 -8.06027 -7.53623 -6.54420 -4.61188 0.68614 1.09362 2.32199 2.93484 3.06313 3.11412 3.14683 3.67361 3.93942 4.25172 4.31254 4.74666 4.82898 4.84557 5.02129 5.05559 5.13390 5.35518 5.42325 5.46242 5.64161 5.79689 6.02380 6.22181 6.24997 6.36461 6.55168 6.61774 6.68457 6.84486 7.11242 7.15635 7.43834 7.99897 8.14056 8.43464 8.54064 8.77990 9.05420 10.18757 10.38756 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.026914 B = 0.004989 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.107156 B = 5611.192500 C = 6638.936066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.725 5.725 2 C 0.081 3.919 3 Si 0.916 3.084 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.458 4.458 8 H 0.086 0.914 9 C 0.355 3.645 10 N -0.490 5.490 11 C 0.193 3.807 12 C 0.277 3.723 13 C -0.143 4.143 14 C -0.072 4.072 15 C -0.114 4.114 16 C -0.097 4.097 17 C -0.128 4.128 18 C -0.113 4.113 19 C -0.084 4.084 20 C 0.133 3.867 21 N -0.437 5.437 22 N -0.379 5.379 23 N -0.480 5.480 24 H 0.424 0.576 25 H 0.277 0.723 26 H 0.143 0.857 27 H 0.136 0.864 28 H 0.124 0.876 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.802 -7.872 -0.905 11.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.349 5.349 2 C -0.145 4.145 3 Si 0.740 3.260 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.499 4.499 8 H 0.104 0.896 9 C 0.104 3.896 10 N -0.222 5.222 11 C -0.085 4.085 12 C 0.124 3.876 13 C -0.164 4.164 14 C -0.098 4.098 15 C -0.116 4.116 16 C -0.116 4.116 17 C -0.146 4.146 18 C -0.133 4.133 19 C -0.103 4.103 20 C 0.010 3.990 21 N -0.146 5.146 22 N -0.221 5.221 23 N -0.200 5.200 24 H 0.266 0.734 25 H 0.088 0.912 26 H 0.161 0.839 27 H 0.154 0.846 28 H 0.142 0.858 29 H 0.139 0.861 30 H 0.143 0.857 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.345 -7.265 -0.854 11.098 hybrid contribution 1.132 -0.093 -0.093 1.139 sum -7.214 -7.358 -0.947 10.348 Atomic orbital electron populations 1.69998 1.06966 1.28349 1.29575 1.25775 0.94840 1.00561 0.93366 0.86192 0.80142 0.80729 0.78945 1.19562 1.20116 1.18700 1.18248 0.94207 0.87382 1.50113 0.89570 1.21687 0.87790 0.86165 0.93958 1.72419 1.10683 1.11316 1.27807 1.21453 0.89732 0.90465 1.06802 1.18529 0.89191 0.88375 0.91521 1.21849 0.98828 0.95307 1.00429 1.21287 0.91387 0.99636 0.97505 1.18913 0.94580 0.94466 1.03681 1.20888 0.91302 0.99530 0.99884 1.20808 0.98624 0.93737 1.01413 1.20804 0.97100 0.95074 1.00333 1.20908 0.90416 1.00366 0.98573 1.19004 0.92057 0.90137 0.97845 1.68150 0.96753 1.38172 1.11536 1.73742 0.96406 1.21098 1.30828 1.45010 1.07526 1.05752 1.61747 0.73391 0.91165 0.83947 0.84590 0.85812 0.86128 0.85745 0.84600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -19.99 11.97 55.56 0.67 -19.32 16 2 C 0.08 2.07 5.49 -17.30 -0.10 1.98 16 3 Si 0.92 18.53 29.57 -169.99 -5.03 13.50 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.26 -5.14 7.11 56.52 0.40 -4.73 16 7 C -0.46 -11.95 9.47 -38.02 -0.36 -12.31 16 8 H 0.09 2.02 7.86 -52.49 -0.41 1.61 16 9 C 0.36 9.73 7.69 -155.74 -1.20 8.53 16 10 N -0.49 -14.33 9.63 -10.43 -0.10 -14.43 16 11 C 0.19 5.09 7.82 -156.68 -1.23 3.87 16 12 C 0.28 6.40 6.75 -82.89 -0.56 5.84 16 13 C -0.14 -2.61 9.62 -39.47 -0.38 -2.99 16 14 C -0.07 -1.10 9.88 -39.26 -0.39 -1.49 16 15 C -0.11 -1.84 5.75 -106.74 -0.61 -2.45 16 16 C -0.10 -1.23 9.77 -39.52 -0.39 -1.61 16 17 C -0.13 -1.48 9.96 -39.91 -0.40 -1.88 16 18 C -0.11 -1.44 9.94 -39.95 -0.40 -1.84 16 19 C -0.08 -1.37 9.98 -39.44 -0.39 -1.76 16 20 C 0.13 2.56 6.61 -84.86 -0.56 1.99 16 21 N -0.44 -10.18 10.22 -7.53 -0.08 -10.25 16 22 N -0.38 -9.27 11.85 32.07 0.38 -8.89 16 23 N -0.48 -11.40 7.07 31.14 0.22 -11.18 16 24 H 0.42 8.21 8.96 -190.21 -1.71 6.51 16 25 H 0.28 6.94 8.29 -40.82 -0.34 6.60 16 26 H 0.14 2.41 7.79 -52.49 -0.41 2.00 16 27 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 28 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 29 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.14 2.20 8.06 -52.49 -0.42 1.77 16 LS Contribution 283.54 15.07 4.27 4.27 Total: -1.00 -33.19 283.54 -10.39 -43.58 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -3.77 Total: 6.84 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -6.95 Total: -4.12 kcal Atomic # 7 Polarization: -65.17 SS G_CDS: 1.09 Total: -64.08 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -33.19 -10.39 -43.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071196985.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.960 kcal (2) G-P(sol) polarization free energy of solvation -33.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds