Wall clock time and date at job start Mon Mar 30 2020 07:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86800 * 119.99868 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47148 * 300.00080 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99871 * 3 2 1 7 7 C 1.40212 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00100 * 179.97438 * 7 2 1 9 9 C 1.40375 * 119.99683 * 0.02562 * 7 2 1 10 10 N 1.33240 * 126.53927 * 359.68799 * 9 7 2 11 11 C 1.33520 * 107.23573 * 179.87955 * 10 9 7 12 12 C 1.48069 * 125.69130 * 180.14348 * 11 10 9 13 13 N 1.32198 * 120.16034 * 359.97438 * 12 11 10 14 14 C 1.32319 * 122.64040 * 179.74555 * 13 12 11 15 15 C 1.36385 * 122.02988 * 0.54241 * 14 13 12 16 16 C 1.40703 * 118.87362 * 359.73227 * 15 14 13 17 17 C 1.40247 * 122.18984 * 179.97438 * 16 15 14 18 18 C 1.36258 * 119.46827 * 180.02562 * 17 16 15 19 19 C 1.39319 * 120.97930 * 0.02562 * 18 17 16 20 20 C 1.36304 * 121.05981 * 359.97438 * 19 18 17 21 21 C 1.40049 * 119.54210 * 0.02562 * 20 19 18 22 22 N 1.32146 * 108.61979 * 0.38768 * 11 10 9 23 23 N 1.28855 * 109.17627 * 359.75712 * 22 11 10 24 24 H 0.96996 * 125.97457 * 179.97438 * 23 22 11 25 25 H 0.96996 * 119.99793 * 0.02562 * 1 2 3 26 26 H 1.07999 * 118.98120 * 180.27475 * 14 13 12 27 27 H 1.07997 * 120.56436 * 179.71994 * 15 14 13 28 28 H 1.08004 * 120.26257 * 0.05573 * 17 16 15 29 29 H 1.07999 * 119.50868 * 179.97438 * 18 17 16 30 30 H 1.08005 * 119.46906 * 179.97438 * 19 18 17 31 31 H 1.08004 * 120.22625 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8819 2.3965 -1.2125 6 1 1.8820 2.3965 1.2125 7 6 2.0078 -1.2143 0.0005 8 1 3.0878 -1.2143 0.0001 9 6 1.3059 -2.4299 0.0005 10 7 -0.0178 -2.5816 0.0059 11 6 -0.2657 -3.8936 0.0010 12 6 -1.6077 -4.5192 0.0013 13 7 -2.6927 -3.7638 0.0072 14 6 -3.9150 -4.2704 0.0027 15 6 -4.1406 -5.6155 0.0026 16 6 -3.0378 -6.4893 0.0016 17 6 -3.1893 -7.8836 0.0020 18 6 -2.0824 -8.6781 0.0015 19 6 -0.8033 -8.1260 0.0012 20 6 -0.6204 -6.7752 0.0009 21 6 -1.7352 -5.9275 0.0013 22 7 0.8865 -4.5407 0.0012 23 7 1.8515 -3.6868 0.0009 24 1 2.7984 -3.8971 0.0014 25 1 -0.4850 0.8400 -0.0004 26 1 -4.7601 -3.5980 0.0035 27 1 -5.1485 -6.0033 0.0035 28 1 -4.1755 -8.3239 0.0022 29 1 -2.1983 -9.7519 0.0022 30 1 0.0572 -8.7787 0.0013 31 1 0.3773 -6.3616 0.0002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071196989.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:54:29 Heat of formation + Delta-G solvation = 136.979453 kcal Electronic energy + Delta-G solvation = -18693.807039 eV Core-core repulsion = 15748.697378 eV Total energy + Delta-G solvation = -2945.109661 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.086 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.15805 -40.15581 -36.90145 -33.76757 -33.07419 -31.14553 -30.91441 -29.67524 -28.94344 -25.90113 -24.20462 -23.07355 -22.29243 -20.75605 -19.74947 -17.58364 -17.31671 -17.06211 -16.14281 -15.67218 -14.78104 -14.46200 -14.45597 -14.18940 -13.55142 -13.44037 -13.31594 -12.83532 -12.33612 -11.78319 -11.75005 -11.47484 -11.29965 -10.90202 -10.79279 -10.32699 -10.01037 -9.78085 -9.55472 -8.81618 -8.79381 -8.65997 -8.11794 -8.05091 -7.34751 -6.56730 -4.65128 0.67169 1.30141 2.20857 2.96447 3.10223 3.14316 3.29421 3.65231 3.91415 4.21723 4.28398 4.83015 4.86494 4.90179 4.98202 5.18183 5.27449 5.39995 5.43132 5.57353 5.67544 5.87760 6.04681 6.20279 6.37495 6.44302 6.61985 6.71695 6.85534 6.99577 7.13524 7.21708 7.40439 7.98873 8.10194 8.39444 8.61983 8.75143 9.02466 10.13772 10.35764 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.033688 B = 0.005196 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.946795 B = 5387.441671 C = 6208.545228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.724 5.724 2 C 0.080 3.920 3 Si 0.916 3.084 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.455 4.455 8 H 0.087 0.913 9 C 0.358 3.642 10 N -0.487 5.487 11 C 0.201 3.799 12 C 0.293 3.707 13 N -0.458 5.458 14 C 0.093 3.907 15 C -0.185 4.185 16 C -0.020 4.020 17 C -0.131 4.131 18 C -0.097 4.097 19 C -0.148 4.148 20 C -0.069 4.069 21 C -0.103 4.103 22 N -0.382 5.382 23 N -0.481 5.481 24 H 0.424 0.576 25 H 0.278 0.722 26 H 0.151 0.849 27 H 0.131 0.869 28 H 0.125 0.875 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.329 -10.162 -0.019 10.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.348 5.348 2 C -0.147 4.147 3 Si 0.741 3.259 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.497 4.497 8 H 0.105 0.895 9 C 0.107 3.893 10 N -0.219 5.219 11 C -0.077 4.077 12 C 0.142 3.858 13 N -0.168 5.168 14 C -0.053 4.053 15 C -0.206 4.206 16 C -0.025 4.025 17 C -0.149 4.149 18 C -0.116 4.116 19 C -0.166 4.166 20 C -0.089 4.089 21 C -0.107 4.107 22 N -0.225 5.225 23 N -0.201 5.201 24 H 0.266 0.734 25 H 0.089 0.911 26 H 0.168 0.832 27 H 0.149 0.851 28 H 0.143 0.857 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -3.907 -9.536 -0.005 10.306 hybrid contribution 0.879 -0.141 -0.006 0.890 sum -3.028 -9.677 -0.010 10.140 Atomic orbital electron populations 1.70007 1.06944 1.28360 1.29459 1.25788 0.94876 1.00619 0.93376 0.86139 0.80339 0.80914 0.78556 1.18593 1.19846 1.19850 1.18292 0.93804 0.87185 1.50402 0.89481 1.21671 0.87824 0.86010 0.93823 1.72459 1.10544 1.11087 1.27820 1.21361 0.89447 0.90286 1.06570 1.18658 0.89543 0.86900 0.90733 1.67515 0.97634 1.40047 1.11599 1.22235 0.94292 0.93146 0.95585 1.21837 0.98498 0.94649 1.05616 1.18115 0.92472 0.94097 0.97798 1.20802 0.98883 0.91895 1.03316 1.20929 0.92829 0.99562 0.98285 1.20920 0.96912 0.95437 1.03332 1.22120 1.01070 0.92874 0.92796 1.18884 0.93857 0.94060 1.03853 1.73391 0.96406 1.20586 1.32073 1.45037 1.07504 1.05122 1.62435 0.73361 0.91124 0.83197 0.85065 0.85738 0.86322 0.86163 0.81161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.75 11.94 55.56 0.66 -19.08 16 2 C 0.08 2.02 5.50 -17.30 -0.10 1.93 16 3 Si 0.92 18.29 29.56 -169.99 -5.03 13.27 16 4 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 5 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.45 -11.68 9.47 -38.04 -0.36 -12.04 16 8 H 0.09 2.00 7.85 -52.49 -0.41 1.59 16 9 C 0.36 9.61 7.70 -155.73 -1.20 8.41 16 10 N -0.49 -14.05 9.63 -10.47 -0.10 -14.15 16 11 C 0.20 5.24 7.77 -156.63 -1.22 4.02 16 12 C 0.29 6.88 6.82 -82.47 -0.56 6.31 16 13 N -0.46 -10.51 10.23 -9.77 -0.10 -10.61 16 14 C 0.09 1.65 11.06 -18.01 -0.20 1.46 16 15 C -0.18 -2.85 9.88 -39.32 -0.39 -3.24 16 16 C -0.02 -0.33 5.75 -106.83 -0.61 -0.95 16 17 C -0.13 -1.79 9.82 -39.54 -0.39 -2.17 16 18 C -0.10 -1.25 9.95 -39.89 -0.40 -1.64 16 19 C -0.15 -2.14 9.95 -39.88 -0.40 -2.54 16 20 C -0.07 -1.25 9.32 -39.60 -0.37 -1.62 16 21 C -0.10 -2.05 5.76 -106.63 -0.61 -2.66 16 22 N -0.38 -9.06 8.99 32.04 0.29 -8.77 16 23 N -0.48 -11.09 7.07 31.14 0.22 -10.87 16 24 H 0.42 7.92 8.96 -190.21 -1.70 6.21 16 25 H 0.28 6.87 8.29 -40.82 -0.34 6.53 16 26 H 0.15 2.15 8.06 -52.49 -0.42 1.73 16 27 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 28 H 0.12 1.31 8.06 -52.48 -0.42 0.88 16 29 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 30 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 31 H 0.17 3.30 4.90 -52.48 -0.26 3.05 16 LS Contribution 277.76 15.07 4.19 4.19 Total: -1.00 -32.36 277.76 -10.29 -42.65 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -3.62 Total: 8.13 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -6.80 Total: -4.75 kcal Atomic # 7 Polarization: -64.46 SS G_CDS: 0.97 Total: -63.49 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.27 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -32.36 -10.29 -42.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071196989.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.627 kcal (2) G-P(sol) polarization free energy of solvation -32.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds