Wall clock time and date at job start Mon Mar 30 2020 07:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86800 * 119.99868 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47148 * 300.00080 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99871 * 3 2 1 7 7 C 1.40212 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00100 * 179.97438 * 7 2 1 9 9 C 1.40375 * 119.99683 * 0.02562 * 7 2 1 10 10 N 1.33240 * 126.53927 * 359.68799 * 9 7 2 11 11 C 1.33520 * 107.23573 * 179.87955 * 10 9 7 12 12 C 1.48069 * 125.69130 * 180.14348 * 11 10 9 13 13 N 1.32198 * 120.16034 * 359.97438 * 12 11 10 14 14 C 1.32319 * 122.64040 * 179.74555 * 13 12 11 15 15 C 1.36385 * 122.02988 * 0.54241 * 14 13 12 16 16 C 1.40703 * 118.87362 * 359.73227 * 15 14 13 17 17 C 1.40247 * 122.18984 * 179.97438 * 16 15 14 18 18 C 1.36258 * 119.46827 * 180.02562 * 17 16 15 19 19 C 1.39319 * 120.97930 * 0.02562 * 18 17 16 20 20 C 1.36304 * 121.05981 * 359.97438 * 19 18 17 21 21 C 1.40049 * 119.54210 * 0.02562 * 20 19 18 22 22 N 1.32146 * 108.61979 * 0.38768 * 11 10 9 23 23 N 1.28855 * 109.17627 * 359.75712 * 22 11 10 24 24 H 0.96996 * 125.97457 * 179.97438 * 23 22 11 25 25 H 0.96996 * 119.99793 * 0.02562 * 1 2 3 26 26 H 1.07999 * 118.98120 * 180.27475 * 14 13 12 27 27 H 1.07997 * 120.56436 * 179.71994 * 15 14 13 28 28 H 1.08004 * 120.26257 * 0.05573 * 17 16 15 29 29 H 1.07999 * 119.50868 * 179.97438 * 18 17 16 30 30 H 1.08005 * 119.46906 * 179.97438 * 19 18 17 31 31 H 1.08004 * 120.22625 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8819 2.3965 -1.2125 6 1 1.8820 2.3965 1.2125 7 6 2.0078 -1.2143 0.0005 8 1 3.0878 -1.2143 0.0001 9 6 1.3059 -2.4299 0.0005 10 7 -0.0178 -2.5816 0.0059 11 6 -0.2657 -3.8936 0.0010 12 6 -1.6077 -4.5192 0.0013 13 7 -2.6927 -3.7638 0.0072 14 6 -3.9150 -4.2704 0.0027 15 6 -4.1406 -5.6155 0.0026 16 6 -3.0378 -6.4893 0.0016 17 6 -3.1893 -7.8836 0.0020 18 6 -2.0824 -8.6781 0.0015 19 6 -0.8033 -8.1260 0.0012 20 6 -0.6204 -6.7752 0.0009 21 6 -1.7352 -5.9275 0.0013 22 7 0.8865 -4.5407 0.0012 23 7 1.8515 -3.6868 0.0009 24 1 2.7984 -3.8971 0.0014 25 1 -0.4850 0.8400 -0.0004 26 1 -4.7601 -3.5980 0.0035 27 1 -5.1485 -6.0033 0.0035 28 1 -4.1755 -8.3239 0.0022 29 1 -2.1983 -9.7519 0.0022 30 1 0.0572 -8.7787 0.0013 31 1 0.3773 -6.3616 0.0002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071196989.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:54:27 Heat of formation + Delta-G solvation = 115.982565 kcal Electronic energy + Delta-G solvation = -18694.717532 eV Core-core repulsion = 15748.697378 eV Total energy + Delta-G solvation = -2946.020154 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.00754 -41.51939 -38.18308 -35.64964 -34.56338 -32.95290 -32.28707 -31.36934 -30.33159 -27.80422 -25.66230 -24.38348 -23.65379 -22.67336 -21.33483 -19.47222 -18.69138 -18.48562 -17.77632 -17.06169 -16.48430 -16.28619 -15.79440 -15.49916 -15.04424 -14.96435 -14.58679 -14.37448 -13.58901 -13.52039 -13.05357 -12.93518 -12.74739 -12.59399 -12.26210 -11.88612 -11.48293 -11.47707 -11.35202 -10.49960 -10.29283 -10.07251 -10.02951 -9.84486 -8.75052 -8.45391 -6.63737 -0.66973 0.04201 0.88140 1.31681 1.45362 1.62854 1.69909 2.17001 2.22800 2.55941 2.62653 3.24915 3.27050 3.47756 3.65325 3.77139 3.97394 4.07661 4.33637 4.38365 4.52449 4.55956 4.65372 4.93755 4.97097 5.18912 5.22891 5.29443 5.45779 5.52529 5.62314 5.79956 6.04190 6.10366 6.25633 6.47301 6.80242 7.12077 7.24487 8.22611 8.50293 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.033688 B = 0.005196 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.946795 B = 5387.441671 C = 6208.545228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.031 3.969 3 Si 1.004 2.996 4 H -0.245 1.245 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.477 4.477 8 H 0.109 0.891 9 C 0.329 3.671 10 N -0.536 5.536 11 C 0.182 3.818 12 C 0.237 3.763 13 N -0.500 5.500 14 C 0.058 3.942 15 C -0.144 4.144 16 C -0.044 4.044 17 C -0.114 4.114 18 C -0.094 4.094 19 C -0.123 4.123 20 C -0.115 4.115 21 C -0.113 4.113 22 N -0.368 5.368 23 N -0.473 5.473 24 H 0.441 0.559 25 H 0.281 0.719 26 H 0.176 0.824 27 H 0.185 0.815 28 H 0.170 0.830 29 H 0.167 0.833 30 H 0.148 0.852 31 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.348 -12.739 -0.021 13.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.191 4.191 3 Si 0.823 3.177 4 H -0.168 1.168 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.519 4.519 8 H 0.127 0.873 9 C 0.078 3.922 10 N -0.269 5.269 11 C -0.096 4.096 12 C 0.086 3.914 13 N -0.210 5.210 14 C -0.088 4.088 15 C -0.164 4.164 16 C -0.050 4.050 17 C -0.132 4.132 18 C -0.113 4.113 19 C -0.141 4.141 20 C -0.135 4.135 21 C -0.117 4.117 22 N -0.209 5.209 23 N -0.195 5.195 24 H 0.286 0.714 25 H 0.092 0.908 26 H 0.193 0.807 27 H 0.202 0.798 28 H 0.188 0.812 29 H 0.184 0.816 30 H 0.166 0.834 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.894 -12.159 -0.006 13.107 hybrid contribution 1.066 0.376 -0.005 1.131 sum -3.828 -11.783 -0.011 12.389 Atomic orbital electron populations 1.70172 1.09276 1.29679 1.31056 1.26958 0.95602 1.04652 0.91915 0.84843 0.79347 0.75006 0.78458 1.16787 1.19470 1.19490 1.18857 0.94974 0.87410 1.50663 0.87337 1.22074 0.88073 0.87442 0.94655 1.72364 1.11993 1.13027 1.29509 1.22086 0.91421 0.89762 1.06345 1.18700 0.88575 0.88731 0.95385 1.67307 0.99354 1.42240 1.12148 1.22717 0.93181 0.95286 0.97579 1.22374 1.00474 0.93276 1.00314 1.18563 0.91417 0.96252 0.98724 1.21326 1.01406 0.89967 1.00471 1.21447 0.91435 1.01958 0.96491 1.21334 0.99293 0.93995 0.99518 1.21967 0.99750 0.94628 0.97151 1.19011 0.96111 0.92597 1.03975 1.73467 0.96115 1.20094 1.31272 1.45019 1.08375 1.04226 1.61919 0.71362 0.90817 0.80673 0.79804 0.81212 0.81583 0.83381 0.83548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -44.71 11.94 21.87 0.26 -44.45 16 2 C 0.03 1.59 5.50 85.34 0.47 2.06 16 3 Si 1.00 38.18 29.56 68.60 2.03 40.21 16 4 H -0.25 -8.53 7.11 99.48 0.71 -7.83 16 5 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 6 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 7 C -0.48 -25.43 9.47 23.27 0.22 -25.21 16 8 H 0.11 5.06 7.85 -2.91 -0.02 5.04 16 9 C 0.33 18.74 7.70 133.78 1.03 19.77 16 10 N -0.54 -33.20 9.63 -187.02 -1.80 -35.00 16 11 C 0.18 10.20 7.77 137.32 1.07 11.26 16 12 C 0.24 11.82 6.82 42.48 0.29 12.11 16 13 N -0.50 -24.32 10.23 -184.83 -1.89 -26.21 16 14 C 0.06 2.05 11.06 84.19 0.93 2.98 16 15 C -0.14 -4.04 9.88 22.44 0.22 -3.82 16 16 C -0.04 -1.39 5.75 -21.29 -0.12 -1.52 16 17 C -0.11 -2.51 9.82 22.30 0.22 -2.29 16 18 C -0.09 -1.93 9.95 22.07 0.22 -1.71 16 19 C -0.12 -3.24 9.95 22.08 0.22 -3.02 16 20 C -0.11 -4.22 9.32 22.26 0.21 -4.01 16 21 C -0.11 -4.60 5.76 -21.16 -0.12 -4.72 16 22 N -0.37 -18.59 8.99 -52.54 -0.47 -19.06 16 23 N -0.47 -23.04 7.07 -55.41 -0.39 -23.43 16 24 H 0.44 17.23 8.96 -219.80 -1.97 15.26 16 25 H 0.28 14.70 8.29 -92.71 -0.77 13.94 16 26 H 0.18 4.97 8.06 -2.91 -0.02 4.95 16 27 H 0.18 3.12 8.06 -2.91 -0.02 3.09 16 28 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 29 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 30 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 31 H 0.15 5.99 4.90 -2.91 -0.01 5.97 16 Total: -1.00 -78.97 277.76 1.81 -77.16 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: -0.77 Total: 28.88 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 4.85 Total: 1.90 kcal Atomic # 7 Polarization: -143.85 SS G_CDS: -4.29 Total: -148.15 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.21 kcal Total: -78.97 1.81 -77.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071196989.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.141 kcal (2) G-P(sol) polarization free energy of solvation -78.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds