Wall clock time and date at job start Mon Mar 30 2020 08:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00490 * 2 1 4 4 H 1.48497 * 109.47525 * 240.00433 * 3 2 1 5 5 H 1.48499 * 109.47051 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47124 * 120.00513 * 3 2 1 7 7 C 1.37879 * 119.99272 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99900 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00462 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47094 * 174.19198 * 9 7 2 11 11 C 1.46902 * 110.99635 * 159.84172 * 10 9 7 12 12 C 1.50700 * 109.46919 * 190.00069 * 11 10 9 13 13 C 1.38183 * 119.61077 * 94.98008 * 12 11 10 14 14 C 1.38667 * 119.19531 * 180.02562 * 13 12 11 15 15 C 1.38609 * 118.43460 * 0.02562 * 14 13 12 16 16 C 1.38355 * 119.15179 * 0.02562 * 15 14 13 17 17 Cl 1.73596 * 119.63655 * 180.25920 * 16 15 14 18 18 N 1.31880 * 119.60738 * 274.99920 * 12 11 10 19 19 C 1.46892 * 111.00054 * 283.79447 * 10 9 7 20 20 C 1.53001 * 117.50096 * 138.09551 * 19 10 9 21 21 C 1.53003 * 117.50077 * 69.43707 * 19 10 9 22 22 H 0.97004 * 119.99191 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47133 * 54.19287 * 9 7 2 24 24 H 1.09002 * 109.46969 * 294.19194 * 9 7 2 25 25 H 1.08995 * 109.47126 * 69.99896 * 11 10 9 26 26 H 1.09005 * 109.47323 * 310.00275 * 11 10 9 27 27 H 1.08001 * 120.40793 * 359.97438 * 13 12 11 28 28 H 1.08001 * 120.78896 * 179.97438 * 14 13 12 29 29 H 1.07999 * 120.42902 * 180.02562 * 15 14 13 30 30 H 1.08998 * 115.55291 * 283.76625 * 19 10 9 31 31 H 1.09007 * 117.49627 * 359.97438 * 20 19 10 32 32 H 1.08997 * 117.50112 * 145.02020 * 20 19 10 33 33 H 1.09002 * 117.50065 * 214.98070 * 21 19 10 34 34 H 1.09003 * 117.49320 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6961 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1943 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 7 2.1992 -3.6123 -0.1413 11 6 1.6039 -4.8728 0.3221 12 6 2.6704 -5.9350 0.3950 13 6 3.3122 -6.1769 1.5946 14 6 4.2926 -7.1559 1.6519 15 6 4.5926 -7.8579 0.4950 16 6 3.9091 -7.5601 -0.6705 17 17 4.2700 -8.4362 -2.1250 18 7 2.9805 -6.6224 -0.6869 19 6 2.6699 -3.7307 -1.5277 20 6 4.1572 -4.0143 -1.7471 21 6 3.5881 -2.6280 -2.0587 22 1 -0.4849 0.8401 0.0004 23 1 0.5482 -2.5131 -0.8337 24 1 0.7048 -2.6035 0.9371 25 1 0.8267 -5.1855 -0.3752 26 1 1.1679 -4.7271 1.3104 27 1 3.0540 -5.6098 2.4768 28 1 4.8108 -7.3659 2.5759 29 1 5.3503 -8.6275 0.5031 30 1 1.9638 -4.1779 -2.2274 31 1 4.7866 -4.1127 -0.8625 32 1 4.4297 -4.6478 -2.5912 33 1 3.4862 -2.3500 -3.1078 34 1 3.8425 -1.8144 -1.3793 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072581127.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:05:28 Heat of formation + Delta-G solvation = 46.869721 kcal Electronic energy + Delta-G solvation = -17851.364824 eV Core-core repulsion = 15003.455205 eV Total energy + Delta-G solvation = -2847.909618 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -41.29290 -39.10247 -37.56542 -35.45610 -34.64482 -33.46468 -32.23609 -29.24172 -26.67365 -24.50622 -24.04187 -23.22383 -22.95833 -21.10262 -18.74245 -17.94266 -17.45259 -16.79240 -16.60583 -16.42219 -15.93686 -15.71236 -14.91970 -14.78259 -14.31505 -13.95290 -13.76727 -13.24265 -13.08806 -12.94353 -12.63826 -12.56443 -12.48401 -12.35465 -12.24492 -11.81159 -11.27363 -11.12776 -10.81907 -10.78729 -10.51169 -10.44366 -9.81644 -9.09762 -8.13362 -6.20497 0.00685 0.28732 0.87185 1.44188 1.46206 1.53591 2.42832 2.63460 3.09399 3.19217 3.27264 3.42868 3.80246 4.02494 4.14479 4.17556 4.23943 4.38746 4.42297 4.57483 4.61254 4.74706 4.81893 4.85100 5.09460 5.11855 5.16366 5.21971 5.34305 5.44296 5.60891 5.77594 6.09897 6.35741 6.58398 6.86301 6.92869 7.46805 8.97193 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.031201 B = 0.004938 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.204911 B = 5668.765452 C = 5983.865741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.003 3.997 3 Si 0.960 3.040 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.503 4.503 8 H 0.068 0.932 9 C 0.210 3.790 10 N -0.504 5.504 11 C 0.102 3.898 12 C 0.152 3.848 13 C -0.155 4.155 14 C -0.053 4.053 15 C -0.155 4.155 16 C 0.158 3.842 17 Cl -0.042 7.042 18 N -0.494 5.494 19 C 0.023 3.977 20 C -0.136 4.136 21 C -0.168 4.168 22 H 0.262 0.738 23 H -0.035 1.035 24 H 0.010 0.990 25 H 0.031 0.969 26 H 0.097 0.903 27 H 0.155 0.845 28 H 0.184 0.816 29 H 0.171 0.829 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.406 -16.151 2.207 19.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.194 4.194 3 Si 0.786 3.214 4 H -0.195 1.195 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.542 4.542 8 H 0.086 0.914 9 C 0.085 3.915 10 N -0.228 5.228 11 C -0.026 4.026 12 C 0.014 3.986 13 C -0.175 4.175 14 C -0.079 4.079 15 C -0.176 4.176 16 C -0.007 4.007 17 Cl -0.014 7.014 18 N -0.205 5.205 19 C -0.086 4.086 20 C -0.174 4.174 21 C -0.205 4.205 22 H 0.070 0.930 23 H -0.017 1.017 24 H 0.028 0.972 25 H 0.049 0.951 26 H 0.116 0.884 27 H 0.173 0.827 28 H 0.201 0.799 29 H 0.189 0.811 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.234 -15.828 1.598 18.916 hybrid contribution -0.574 0.646 -0.232 0.895 sum 9.660 -15.182 1.366 18.046 Atomic orbital electron populations 1.70081 1.07637 1.27626 1.52482 1.25802 0.95576 1.02742 0.95329 0.85569 0.78229 0.78584 0.79067 1.19451 1.21287 1.19284 1.21420 0.93600 0.90383 1.48751 0.91378 1.19410 0.89638 0.88606 0.93851 1.61919 1.39287 1.02642 1.18965 1.21000 0.92641 0.87709 1.01245 1.20863 0.95894 0.93348 0.88475 1.22274 0.97131 0.99046 0.99057 1.21991 0.94446 0.92073 0.99346 1.22132 1.01635 1.02788 0.91027 1.21851 0.95521 0.94368 0.88949 1.98384 1.92796 1.72727 1.37470 1.66644 1.15687 1.06335 1.31883 1.21953 0.92703 1.04126 0.89802 1.22718 0.94767 0.98143 1.01750 1.23105 1.03469 0.92976 1.00963 0.92962 1.01689 0.97219 0.95095 0.88449 0.82743 0.79916 0.81136 0.92232 0.90129 0.88869 0.89115 0.88638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.98 13.29 21.45 0.28 -55.69 16 2 C 0.00 0.16 5.46 84.66 0.46 0.63 16 3 Si 0.96 43.90 29.54 68.60 2.03 45.93 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 7 C -0.50 -27.69 7.82 25.60 0.20 -27.49 16 8 H 0.07 3.68 5.78 -2.91 -0.02 3.66 16 9 C 0.21 11.03 4.77 85.56 0.41 11.44 16 10 N -0.50 -21.78 4.56 -880.07 -4.01 -25.79 16 11 C 0.10 3.74 5.26 85.56 0.45 4.19 16 12 C 0.15 4.69 5.56 42.54 0.24 4.93 16 13 C -0.15 -3.67 9.72 22.36 0.22 -3.45 16 14 C -0.05 -0.92 10.17 22.46 0.23 -0.69 16 15 C -0.16 -2.92 9.88 22.39 0.22 -2.70 16 16 C 0.16 4.06 7.27 84.70 0.62 4.68 16 17 Cl -0.04 -0.99 29.11 -2.72 -0.08 -1.07 16 18 N -0.49 -15.53 8.95 -174.85 -1.56 -17.10 16 19 C 0.02 0.96 4.06 44.92 0.18 1.15 16 20 C -0.14 -4.84 9.29 30.62 0.28 -4.55 16 21 C -0.17 -6.72 9.48 30.62 0.29 -6.43 16 22 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 23 H -0.03 -2.04 7.99 -2.39 -0.02 -2.06 16 24 H 0.01 0.53 7.73 -2.39 -0.02 0.52 16 25 H 0.03 1.19 8.12 -2.39 -0.02 1.17 16 26 H 0.10 3.28 7.72 -2.38 -0.02 3.26 16 27 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 28 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 29 H 0.17 2.08 8.06 -2.91 -0.02 2.05 16 30 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.08 2.91 8.14 -2.38 -0.02 2.89 16 32 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 33 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 34 H 0.10 4.24 5.45 -2.39 -0.01 4.23 16 Total: -1.00 -64.62 303.34 1.55 -63.07 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 1.10 Total: 8.96 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: 3.80 Total: -18.32 kcal Atomic # 7 Polarization: -93.29 SS G_CDS: -5.29 Total: -98.58 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.08 Total: -1.07 kcal Total: -64.62 1.55 -63.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072581127.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.940 kcal (2) G-P(sol) polarization free energy of solvation -64.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds