Wall clock time and date at job start Mon Mar 30 2020 07:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99961 * 2 1 4 4 H 1.48498 * 109.46961 * 269.99397 * 3 2 1 5 5 H 1.48498 * 109.47187 * 29.99986 * 3 2 1 6 6 H 1.48502 * 109.46962 * 150.00174 * 3 2 1 7 7 C 1.37882 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99969 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99830 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.46926 * 179.97438 * 9 7 2 11 11 N 1.46895 * 109.46945 * 180.02562 * 10 9 7 12 12 C 1.46551 * 111.00406 * 48.97422 * 11 10 9 13 13 C 1.53492 * 109.12156 * 178.96199 * 12 11 10 14 14 N 1.47266 * 107.24516 * 298.31893 * 13 12 11 15 15 C 1.40464 * 117.65328 * 41.20853 * 14 13 12 16 16 C 1.38644 * 119.46436 * 168.47367 * 15 14 13 17 17 C 1.38366 * 119.99829 * 179.45448 * 16 15 14 18 18 Cl 1.73599 * 120.02414 * 180.02562 * 17 16 15 19 19 C 1.38355 * 119.94991 * 359.97438 * 17 16 15 20 20 C 1.38122 * 120.28288 * 0.38922 * 19 17 16 21 21 C 1.39082 * 120.23525 * 359.46339 * 20 19 17 22 22 H 0.97006 * 119.99915 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47728 * 59.99860 * 9 7 2 24 24 H 1.09007 * 109.47283 * 299.99558 * 9 7 2 25 25 H 1.08994 * 109.46697 * 59.99831 * 10 9 7 26 26 H 1.09003 * 109.46680 * 299.99516 * 10 9 7 27 27 H 1.09002 * 109.53059 * 298.85635 * 12 11 10 28 28 H 1.09001 * 109.52886 * 59.07072 * 12 11 10 29 29 H 1.09000 * 109.90108 * 57.75361 * 13 12 11 30 30 H 1.09005 * 109.90112 * 178.80453 * 13 12 11 31 31 H 0.97000 * 121.17418 * 221.19349 * 14 13 12 32 32 H 1.08005 * 120.00504 * 359.48555 * 16 15 14 33 33 H 1.07992 * 119.85724 * 180.11626 * 19 17 16 34 34 H 1.08001 * 119.88412 * 179.73671 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5106 -4.9342 -0.0001 12 6 0.4706 -4.9398 -1.0326 13 6 -0.2506 -6.2945 -1.0125 14 7 0.7516 -7.3274 -1.3247 15 6 2.0220 -7.2012 -0.7390 16 6 2.9126 -8.2616 -0.8068 17 6 4.1710 -8.1452 -0.2435 18 17 5.2869 -9.4723 -0.3285 19 6 4.5397 -6.9700 0.3867 20 6 3.6536 -5.9133 0.4636 21 6 2.3873 -6.0185 -0.1019 22 1 -0.4850 0.8401 0.0004 23 1 0.6245 -2.5571 -0.8896 24 1 0.6239 -2.5567 0.8904 25 1 2.8718 -3.6043 0.8905 26 1 2.8718 -3.6044 -0.8895 27 1 -0.2455 -4.1427 -0.8327 28 1 0.9269 -4.7844 -2.0102 29 1 -0.6739 -6.4749 -0.0243 30 1 -1.0418 -6.3048 -1.7623 31 1 0.5417 -8.0688 -1.9139 32 1 2.6243 -9.1783 -1.2997 33 1 5.5229 -6.8801 0.8243 34 1 3.9466 -5.0004 0.9608 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076926570.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:26 Heat of formation + Delta-G solvation = 26.796438 kcal Electronic energy + Delta-G solvation = -17657.803906 eV Core-core repulsion = 14809.023845 eV Total energy + Delta-G solvation = -2848.780061 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.34978 -37.22695 -35.92371 -35.35966 -33.06863 -30.38081 -30.29743 -29.25975 -26.38696 -24.32292 -23.67801 -22.30015 -20.42947 -19.48554 -17.69868 -16.75201 -16.54240 -15.80866 -14.92512 -14.64621 -14.40404 -14.07253 -13.95576 -13.74905 -13.42815 -12.97486 -12.28031 -12.14254 -12.02157 -11.80105 -11.54003 -11.11510 -11.03123 -10.95172 -10.63611 -10.59488 -10.14391 -9.85868 -9.59764 -9.27748 -9.15634 -8.42835 -7.96528 -6.87470 -6.09409 -4.12302 1.42502 1.63722 2.28796 3.27482 3.34188 3.37316 3.48811 3.79872 4.23531 4.42474 4.86040 5.03812 5.26697 5.27372 5.32411 5.42145 5.49412 5.55978 5.88910 5.91104 6.00440 6.15524 6.21860 6.23233 6.36407 6.51858 6.66572 6.76447 7.21057 7.23375 7.50587 7.67980 7.68565 7.83720 7.91954 8.29796 8.93442 9.52309 11.01907 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.028017 B = 0.004424 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.163961 B = 6327.813827 C = 7212.665685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.021 3.979 10 C 0.064 3.936 11 N -0.488 5.488 12 C 0.038 3.962 13 C 0.122 3.878 14 N -0.756 5.756 15 C 0.178 3.822 16 C -0.161 4.161 17 C -0.031 4.031 18 Cl -0.089 7.089 19 C -0.130 4.130 20 C -0.117 4.117 21 C 0.080 3.920 22 H 0.262 0.738 23 H 0.021 0.979 24 H 0.027 0.973 25 H 0.073 0.927 26 H 0.035 0.965 27 H 0.109 0.891 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.401 0.599 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.359 -15.983 -2.411 16.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.060 4.060 11 N -0.201 5.201 12 C -0.090 4.090 13 C -0.003 4.003 14 N -0.390 5.390 15 C 0.074 3.926 16 C -0.185 4.185 17 C -0.060 4.060 18 Cl -0.060 7.060 19 C -0.151 4.151 20 C -0.139 4.139 21 C -0.023 4.023 22 H 0.071 0.929 23 H 0.039 0.961 24 H 0.045 0.955 25 H 0.091 0.909 26 H 0.053 0.947 27 H 0.127 0.873 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.236 0.764 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.864 -15.773 -1.935 16.148 hybrid contribution 0.741 0.579 -0.846 1.265 sum 3.605 -15.195 -2.782 15.863 Atomic orbital electron populations 1.69953 1.06062 1.26797 1.50374 1.24977 0.94850 0.99279 0.95050 0.86563 0.79884 0.83260 0.78139 1.20649 1.21145 1.19771 1.21115 0.93086 0.90723 1.51334 0.92553 1.19261 0.94037 0.90376 0.97982 1.22566 0.97162 0.86080 1.00212 1.58422 1.13540 1.03083 1.45059 1.22496 0.95322 0.98198 0.92950 1.21805 0.90516 0.86766 1.01232 1.44732 1.09851 1.30086 1.54339 1.17313 0.86703 0.92686 0.95875 1.20165 0.93121 0.98360 1.06832 1.20338 0.91209 0.89808 1.04615 1.98326 1.62495 1.47683 1.97499 1.20606 1.00397 0.91907 1.02239 1.20912 0.91712 0.99601 1.01724 1.18742 0.92294 0.91429 0.99833 0.92874 0.96087 0.95483 0.90871 0.94676 0.87335 0.93477 0.91472 0.89691 0.76416 0.85605 0.85525 0.84428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.52 -14.23 9.11 -34.44 -0.31 -14.54 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.51 4.35 -27.88 -0.12 0.39 16 10 C 0.06 1.29 4.23 -3.82 -0.02 1.28 16 11 N -0.49 -8.79 4.69 -170.89 -0.80 -9.60 16 12 C 0.04 0.61 4.87 -3.76 -0.02 0.59 16 13 C 0.12 1.53 7.35 -3.37 -0.02 1.51 16 14 N -0.76 -9.39 5.93 -57.62 -0.34 -9.73 16 15 C 0.18 2.62 6.48 -83.39 -0.54 2.08 16 16 C -0.16 -2.15 9.68 -39.38 -0.38 -2.53 16 17 C -0.03 -0.43 6.32 -39.49 -0.25 -0.68 16 18 Cl -0.09 -1.07 28.96 -51.86 -1.50 -2.57 16 19 C -0.13 -1.82 9.81 -39.58 -0.39 -2.21 16 20 C -0.12 -1.83 9.06 -39.31 -0.36 -2.18 16 21 C 0.08 1.34 5.87 -83.54 -0.49 0.85 16 22 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 23 H 0.02 0.53 6.34 -51.93 -0.33 0.20 16 24 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 1.45 6.47 -51.93 -0.34 1.11 16 26 H 0.03 0.72 8.12 -51.93 -0.42 0.30 16 27 H 0.11 1.89 6.26 -51.93 -0.33 1.56 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.40 3.88 8.89 -40.82 -0.36 3.52 16 32 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 33 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 34 H 0.14 2.10 6.05 -52.49 -0.32 1.78 16 LS Contribution 293.18 15.07 4.42 4.42 Total: -1.00 -29.06 293.18 -9.68 -38.74 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -4.17 Total: 1.68 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -3.00 Total: -13.88 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: -0.41 Total: -44.43 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.50 Total: -2.57 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.06 -9.68 -38.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076926570.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.536 kcal (2) G-P(sol) polarization free energy of solvation -29.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds