Wall clock time and date at job start Mon Mar 30 2020 06:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99726 * 2 1 4 4 H 1.48504 * 109.47362 * 240.00059 * 3 2 1 5 5 H 1.48502 * 109.47246 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47210 * 119.99985 * 3 2 1 7 7 C 1.37875 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99826 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00174 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47088 * 180.02562 * 9 7 2 11 11 S 1.81403 * 109.47157 * 180.02562 * 10 9 7 12 12 C 1.81395 * 103.00019 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47176 * 179.97438 * 12 11 10 14 14 O 1.21273 * 120.00173 * 359.97438 * 13 12 11 15 15 N 1.34781 * 119.99935 * 179.97438 * 13 12 11 16 16 C 1.39411 * 119.99499 * 185.08569 * 15 13 12 17 17 C 1.39040 * 119.69155 * 174.92142 * 16 15 13 18 18 C 1.38357 * 119.10269 * 179.97438 * 17 16 15 19 19 C 1.38844 * 118.49358 * 359.97438 * 18 17 16 20 20 C 1.38070 * 119.30794 * 0.25385 * 19 18 17 21 21 N 1.31934 * 120.84988 * 359.49460 * 20 19 18 22 22 H 0.97001 * 120.00941 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47105 * 60.00210 * 9 7 2 24 24 H 1.08994 * 109.47412 * 300.00088 * 9 7 2 25 25 H 1.09000 * 109.47024 * 60.00102 * 10 9 7 26 26 H 1.09002 * 109.46828 * 300.00021 * 10 9 7 27 27 H 1.08997 * 109.47726 * 59.99889 * 12 11 10 28 28 H 1.09007 * 109.46864 * 299.99749 * 12 11 10 29 29 H 0.96996 * 120.00234 * 5.09350 * 15 13 12 30 30 H 1.07999 * 120.44927 * 0.02562 * 17 16 15 31 31 H 1.07995 * 120.75448 * 180.02562 * 18 17 16 32 32 H 1.07997 * 120.34426 * 179.97438 * 19 18 17 33 33 H 1.08000 * 119.57757 * 179.74892 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 16 1.3384 -5.2330 -0.0013 12 6 2.6651 -6.4701 -0.0004 13 6 2.0636 -7.8518 -0.0003 14 8 0.8586 -7.9886 -0.0003 15 7 2.8648 -8.9356 -0.0002 16 6 2.3121 -10.2110 -0.1071 17 6 3.1478 -11.3171 -0.2131 18 6 2.5862 -12.5772 -0.3181 19 6 1.2022 -12.6881 -0.3129 20 6 0.4331 -11.5462 -0.2093 21 7 0.9968 -10.3579 -0.1057 22 1 -0.4851 0.8400 -0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8896 25 1 2.8720 -3.6042 0.8895 26 1 2.8720 -3.6042 -0.8905 27 1 3.2807 -6.3422 0.8900 28 1 3.2819 -6.3420 -0.8900 29 1 3.8259 -8.8282 0.0744 30 1 4.2208 -11.1945 -0.2126 31 1 3.2102 -13.4547 -0.4013 32 1 0.7322 -13.6571 -0.3936 33 1 -0.6439 -11.6271 -0.2089 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082693344.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:07 Heat of formation + Delta-G solvation = 7.787847 kcal Electronic energy + Delta-G solvation = -16355.151527 eV Core-core repulsion = 13507.590897 eV Total energy + Delta-G solvation = -2847.560629 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 5.21 seconds Orbital eigenvalues (eV) -40.92427 -39.05364 -35.07834 -33.66595 -32.66320 -31.13287 -30.81906 -29.14570 -25.25123 -24.17234 -23.44551 -21.33598 -20.55808 -18.47259 -17.24307 -16.50925 -16.44901 -15.86685 -15.66638 -15.50261 -14.61088 -14.48988 -14.33886 -13.87828 -13.62872 -13.36104 -13.01558 -12.59165 -12.30533 -11.95677 -11.48743 -11.00925 -10.98001 -10.63357 -10.32692 -10.18271 -10.11671 -9.64028 -9.52720 -9.21555 -9.02557 -8.54305 -8.40579 -7.10993 -6.04167 -4.09215 0.83612 1.06576 1.84507 2.56905 2.76009 3.18504 3.30971 3.35964 3.37912 3.68545 4.13945 4.42609 4.51722 4.62668 4.76779 4.85270 4.98533 5.03810 5.23162 5.30989 5.39935 5.64748 5.87890 5.98163 6.01241 6.16022 6.51201 6.73393 6.90090 7.58320 7.67303 7.80373 7.91805 8.12622 8.28632 8.95558 9.54420 11.06589 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.076430 B = 0.002795 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.260192 B =10015.804151 C =10351.468770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.076 4.076 11 S -0.208 6.208 12 C -0.133 4.133 13 C 0.519 3.481 14 O -0.441 6.441 15 N -0.664 5.664 16 C 0.366 3.634 17 C -0.212 4.212 18 C -0.049 4.049 19 C -0.211 4.211 20 C 0.135 3.865 21 N -0.477 5.477 22 H 0.263 0.737 23 H 0.027 0.973 24 H 0.027 0.973 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.417 0.583 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.128 -24.970 -0.439 26.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.224 4.224 11 S 0.019 5.981 12 C -0.284 4.284 13 C 0.303 3.697 14 O -0.307 6.307 15 N -0.312 5.312 16 C 0.134 3.866 17 C -0.235 4.235 18 C -0.075 4.075 19 C -0.232 4.232 20 C -0.023 4.023 21 N -0.191 5.191 22 H 0.073 0.927 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.254 0.746 30 H 0.153 0.847 31 H 0.154 0.846 32 H 0.152 0.848 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 6.452 -24.258 -0.372 25.104 hybrid contribution 2.990 0.401 -0.037 3.017 sum 9.442 -23.857 -0.410 25.661 Atomic orbital electron populations 1.69961 1.06070 1.27011 1.49774 1.25020 0.94900 0.99296 0.95077 0.86577 0.79507 0.82813 0.78614 1.20172 1.21166 1.20177 1.21046 0.92918 0.90240 1.52000 0.92512 1.18876 0.93402 0.89083 0.98697 1.23828 1.02006 0.93442 1.03149 1.87653 1.12426 1.00057 1.98007 1.23421 1.03459 0.94827 1.06684 1.20155 0.87479 0.85066 0.77030 1.90865 1.13407 1.85235 1.41177 1.43647 1.11152 1.03427 1.72965 1.18522 0.89557 0.84966 0.93534 1.21458 1.00549 0.92330 1.09176 1.21342 0.95118 0.96829 0.94193 1.22067 0.94632 1.00416 1.06110 1.22737 1.00663 0.86489 0.92460 1.67708 1.09880 1.26761 1.14793 0.92682 0.95425 0.95430 0.91324 0.91336 0.87495 0.87450 0.74633 0.84703 0.84601 0.84782 0.82383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.64 9.11 -34.44 -0.31 -14.96 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.04 1.01 4.98 -27.89 -0.14 0.87 16 10 C -0.08 -1.58 5.88 37.16 0.22 -1.36 16 11 S -0.21 -4.06 20.87 -107.50 -2.24 -6.30 16 12 C -0.13 -1.78 6.43 36.00 0.23 -1.55 16 13 C 0.52 7.55 7.81 -10.98 -0.09 7.46 16 14 O -0.44 -8.51 14.13 5.56 0.08 -8.43 16 15 N -0.66 -7.05 5.39 -11.43 -0.06 -7.11 16 16 C 0.37 4.28 7.42 -154.70 -1.15 3.13 16 17 C -0.21 -1.71 9.94 -39.24 -0.39 -2.10 16 18 C -0.05 -0.34 10.17 -39.31 -0.40 -0.74 16 19 C -0.21 -1.63 10.11 -39.42 -0.40 -2.02 16 20 C 0.13 1.42 11.17 -17.57 -0.20 1.23 16 21 N -0.48 -6.77 7.89 -12.37 -0.10 -6.86 16 22 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 23 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.07 1.34 8.14 -51.92 -0.42 0.91 16 26 H 0.07 1.34 8.14 -51.92 -0.42 0.91 16 27 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.11 1.18 8.14 -51.92 -0.42 0.76 16 29 H 0.42 2.55 8.70 -40.82 -0.36 2.19 16 30 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 31 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 32 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 33 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 306.73 15.07 4.62 4.62 Total: -1.00 -35.90 306.73 -8.83 -44.73 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -4.12 Total: -2.45 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -2.72 Total: -8.44 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.58 Total: -40.14 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.08 Total: -8.43 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -4.06 SS G_CDS: -2.24 Total: -6.30 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -35.90 -8.83 -44.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082693344.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.513 kcal (2) G-P(sol) polarization free energy of solvation -35.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.21 seconds