Wall clock time and date at job start Mon Mar 30 2020 06:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99726 * 2 1 4 4 H 1.48504 * 109.47362 * 240.00059 * 3 2 1 5 5 H 1.48502 * 109.47246 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47210 * 119.99985 * 3 2 1 7 7 C 1.37875 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99826 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00174 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47088 * 180.02562 * 9 7 2 11 11 S 1.81403 * 109.47157 * 180.02562 * 10 9 7 12 12 C 1.81395 * 103.00019 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47176 * 179.97438 * 12 11 10 14 14 O 1.21273 * 120.00173 * 359.97438 * 13 12 11 15 15 N 1.34781 * 119.99935 * 179.97438 * 13 12 11 16 16 C 1.39411 * 119.99499 * 185.08569 * 15 13 12 17 17 C 1.39040 * 119.69155 * 174.92142 * 16 15 13 18 18 C 1.38357 * 119.10269 * 179.97438 * 17 16 15 19 19 C 1.38844 * 118.49358 * 359.97438 * 18 17 16 20 20 C 1.38070 * 119.30794 * 0.25385 * 19 18 17 21 21 N 1.31934 * 120.84988 * 359.49460 * 20 19 18 22 22 H 0.97001 * 120.00941 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47105 * 60.00210 * 9 7 2 24 24 H 1.08994 * 109.47412 * 300.00088 * 9 7 2 25 25 H 1.09000 * 109.47024 * 60.00102 * 10 9 7 26 26 H 1.09002 * 109.46828 * 300.00021 * 10 9 7 27 27 H 1.08997 * 109.47726 * 59.99889 * 12 11 10 28 28 H 1.09007 * 109.46864 * 299.99749 * 12 11 10 29 29 H 0.96996 * 120.00234 * 5.09350 * 15 13 12 30 30 H 1.07999 * 120.44927 * 0.02562 * 17 16 15 31 31 H 1.07995 * 120.75448 * 180.02562 * 18 17 16 32 32 H 1.07997 * 120.34426 * 179.97438 * 19 18 17 33 33 H 1.08000 * 119.57757 * 179.74892 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 16 1.3384 -5.2330 -0.0013 12 6 2.6651 -6.4701 -0.0004 13 6 2.0636 -7.8518 -0.0003 14 8 0.8586 -7.9886 -0.0003 15 7 2.8648 -8.9356 -0.0002 16 6 2.3121 -10.2110 -0.1071 17 6 3.1478 -11.3171 -0.2131 18 6 2.5862 -12.5772 -0.3181 19 6 1.2022 -12.6881 -0.3129 20 6 0.4331 -11.5462 -0.2093 21 7 0.9968 -10.3579 -0.1057 22 1 -0.4851 0.8400 -0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8896 25 1 2.8720 -3.6042 0.8895 26 1 2.8720 -3.6042 -0.8905 27 1 3.2807 -6.3422 0.8900 28 1 3.2819 -6.3420 -0.8900 29 1 3.8259 -8.8282 0.0744 30 1 4.2208 -11.1945 -0.2126 31 1 3.2102 -13.4547 -0.4013 32 1 0.7322 -13.6571 -0.3936 33 1 -0.6439 -11.6271 -0.2089 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082693344.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:03 Heat of formation + Delta-G solvation = -16.298697 kcal Electronic energy + Delta-G solvation = -16356.195998 eV Core-core repulsion = 13507.590897 eV Total energy + Delta-G solvation = -2848.605100 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.083 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -41.75392 -40.00073 -36.03489 -35.75158 -33.34665 -32.89651 -32.03321 -30.03674 -27.30392 -24.92759 -24.22075 -23.18443 -21.60459 -19.28913 -18.66395 -18.23059 -17.19129 -16.92117 -16.79492 -16.50943 -16.45349 -15.61038 -15.44566 -14.98456 -14.94213 -14.76969 -13.94720 -13.77196 -13.68665 -13.44407 -12.87602 -12.86564 -12.45368 -12.13899 -11.87220 -11.69769 -11.37832 -11.32707 -10.79587 -10.75197 -10.59222 -10.05636 -9.29940 -8.65569 -8.21567 -6.35833 0.12289 0.42785 0.51833 1.41969 1.45933 1.53949 1.55515 1.71374 1.87655 2.41788 2.96907 3.11619 3.32412 3.82170 3.99285 4.07283 4.17966 4.23539 4.27445 4.30229 4.39054 4.41728 4.80567 4.90273 5.05986 5.26474 5.32336 5.39810 5.50529 5.75086 5.84674 6.11253 6.13932 6.79216 6.91864 7.32862 7.33852 8.90355 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.076430 B = 0.002795 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.260192 B =10015.804151 C =10351.468770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.975 3.025 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.540 4.540 8 H 0.073 0.927 9 C 0.042 3.958 10 C -0.055 4.055 11 S -0.278 6.278 12 C -0.108 4.108 13 C 0.518 3.482 14 O -0.502 6.502 15 N -0.645 5.645 16 C 0.328 3.672 17 C -0.196 4.196 18 C -0.048 4.048 19 C -0.197 4.197 20 C 0.102 3.898 21 N -0.532 5.532 22 H 0.265 0.735 23 H -0.007 1.007 24 H -0.007 1.007 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.142 0.858 28 H 0.141 0.859 29 H 0.438 0.562 30 H 0.172 0.828 31 H 0.177 0.823 32 H 0.164 0.836 33 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.888 -26.666 -0.555 29.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.799 3.201 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.580 4.580 8 H 0.091 0.909 9 C 0.004 3.996 10 C -0.203 4.203 11 S -0.052 6.052 12 C -0.259 4.259 13 C 0.303 3.697 14 O -0.373 6.373 15 N -0.295 5.295 16 C 0.098 3.902 17 C -0.219 4.219 18 C -0.074 4.074 19 C -0.218 4.218 20 C -0.054 4.054 21 N -0.248 5.248 22 H 0.074 0.926 23 H 0.011 0.989 24 H 0.011 0.989 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.159 0.841 28 H 0.159 0.841 29 H 0.279 0.721 30 H 0.189 0.811 31 H 0.194 0.806 32 H 0.182 0.818 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 10.273 -25.994 -0.488 27.954 hybrid contribution 1.825 0.688 -0.008 1.951 sum 12.098 -25.306 -0.496 28.054 Atomic orbital electron populations 1.70128 1.08165 1.28128 1.51021 1.26097 0.95780 1.03794 0.94422 0.85354 0.78078 0.77279 0.79437 1.18755 1.21148 1.18762 1.21533 0.93854 0.91099 1.51476 0.90913 1.18668 0.93847 0.91717 0.95400 1.23419 1.00325 0.91971 1.04598 1.87938 1.16791 1.02130 1.98292 1.23403 1.00828 0.91662 1.09958 1.20332 0.87023 0.86164 0.76158 1.90852 1.15913 1.86100 1.44396 1.43352 1.11848 1.02456 1.71877 1.18897 0.89595 0.85964 0.95790 1.21857 1.01949 0.91404 1.06696 1.21891 0.95131 0.97803 0.92606 1.22416 0.95241 1.00533 1.03583 1.22970 1.01431 0.86867 0.94173 1.67535 1.11956 1.28913 1.16391 0.92627 0.98870 0.98862 0.89700 0.89740 0.84052 0.84132 0.72067 0.81100 0.80599 0.81806 0.82209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.27 13.29 21.45 0.28 -57.99 16 2 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 3 Si 0.98 43.88 29.54 68.60 2.03 45.90 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 7 C -0.54 -30.54 9.11 25.60 0.23 -30.31 16 8 H 0.07 3.78 7.74 -2.91 -0.02 3.76 16 9 C 0.04 2.31 4.98 29.85 0.15 2.46 16 10 C -0.06 -2.28 5.88 71.98 0.42 -1.86 16 11 S -0.28 -11.05 20.87 -56.49 -1.18 -12.23 16 12 C -0.11 -2.67 6.43 71.24 0.46 -2.21 16 13 C 0.52 14.81 7.81 87.66 0.68 15.50 16 14 O -0.50 -20.21 14.13 -3.01 -0.04 -20.25 16 15 N -0.65 -12.61 5.39 -308.45 -1.66 -14.27 16 16 C 0.33 7.31 7.42 132.92 0.99 8.29 16 17 C -0.20 -2.51 9.94 22.49 0.22 -2.29 16 18 C -0.05 -0.49 10.17 22.44 0.23 -0.26 16 19 C -0.20 -2.59 10.11 22.37 0.23 -2.36 16 20 C 0.10 2.19 11.17 84.64 0.95 3.14 16 21 N -0.53 -15.50 7.89 -193.04 -1.52 -17.02 16 22 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 23 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 24 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 25 H 0.08 3.19 8.14 -2.39 -0.02 3.18 16 26 H 0.08 3.18 8.14 -2.39 -0.02 3.17 16 27 H 0.14 2.58 8.14 -2.39 -0.02 2.57 16 28 H 0.14 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.44 3.96 8.70 -92.71 -0.81 3.15 16 30 H 0.17 0.84 8.06 -2.91 -0.02 0.81 16 31 H 0.18 0.39 8.06 -2.91 -0.02 0.37 16 32 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 33 H 0.16 2.97 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -84.28 306.73 3.23 -81.05 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: 0.31 Total: 4.40 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: 5.02 Total: -9.61 kcal Atomic # 7 Polarization: -86.37 SS G_CDS: -2.90 Total: -89.27 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.04 Total: -20.25 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -11.05 SS G_CDS: -1.18 Total: -12.23 kcal Total: -84.28 3.23 -81.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082693344.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.751 kcal (2) G-P(sol) polarization free energy of solvation -84.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds