Wall clock time and date at job start Mon Mar 30 2020 06:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00294 * 2 1 4 4 H 1.48498 * 109.47234 * 240.00114 * 3 2 1 5 5 H 1.48500 * 109.47097 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46960 * 120.00188 * 3 2 1 7 7 C 1.37884 * 119.99497 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99437 * 158.11896 * 7 2 1 9 9 C 1.50694 * 120.00360 * 338.11825 * 7 2 1 10 10 C 1.53010 * 115.54694 * 324.24353 * 9 7 2 11 11 O 1.42901 * 109.46748 * 279.85722 * 10 9 7 12 12 C 1.35902 * 116.99960 * 179.42924 * 11 10 9 13 13 C 1.38760 * 120.05268 * 354.66017 * 12 11 10 14 14 C 1.38122 * 119.94516 * 180.02562 * 13 12 11 15 15 C 1.38290 * 120.05211 * 0.02562 * 14 13 12 16 16 C 1.38240 * 120.11327 * 359.96556 * 15 14 13 17 17 C 1.38162 * 120.05880 * 0.26926 * 16 15 14 18 18 C 1.50696 * 120.03079 * 179.74843 * 17 16 15 19 19 Cl 1.80294 * 109.47309 * 91.90224 * 18 17 16 20 20 C 1.52995 * 117.51939 * 109.94116 * 9 7 2 21 21 C 1.52999 * 117.50271 * 178.57657 * 9 7 2 22 22 H 0.97001 * 119.99842 * 5.32155 * 1 2 3 23 23 H 1.09001 * 109.47178 * 159.86378 * 10 9 7 24 24 H 1.08993 * 109.47248 * 39.85996 * 10 9 7 25 25 H 1.08004 * 120.02890 * 0.04501 * 13 12 11 26 26 H 1.08001 * 119.97421 * 180.02562 * 14 13 12 27 27 H 1.08004 * 119.94137 * 179.97438 * 15 14 13 28 28 H 1.08006 * 119.96924 * 180.02562 * 16 15 14 29 29 H 1.09005 * 109.47114 * 211.89899 * 18 17 16 30 30 H 1.09001 * 109.46876 * 331.89826 * 18 17 16 31 31 H 1.09008 * 117.50012 * 214.96864 * 20 9 7 32 32 H 1.08995 * 117.50138 * 359.97438 * 20 9 7 33 33 H 1.08999 * 117.49321 * 359.97044 * 21 9 7 34 34 H 1.08995 * 117.50285 * 144.97371 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0261 -1.2277 -0.3492 9 6 1.3324 -2.4524 0.4853 10 6 0.3632 -2.2732 1.6557 11 8 1.1010 -2.1925 2.8768 12 6 0.3859 -2.0194 4.0194 13 6 -0.9857 -1.8182 3.9571 14 6 -1.7102 -1.6419 5.1197 15 6 -1.0698 -1.6654 6.3451 16 6 0.2965 -1.8659 6.4099 17 6 1.0265 -2.0378 5.2496 18 6 2.5167 -2.2507 5.3207 19 17 2.8689 -4.0176 5.3878 20 6 0.9917 -3.5195 -0.5569 21 6 2.1389 -3.7513 0.4286 22 1 -0.4850 0.8364 -0.0779 23 1 -0.3170 -3.1238 1.6977 24 1 -0.2096 -1.3565 1.5160 25 1 -1.4863 -1.7997 3.0002 26 1 -2.7778 -1.4857 5.0717 27 1 -1.6380 -1.5270 7.2531 28 1 0.7942 -1.8842 7.3683 29 1 2.9878 -1.8196 4.4373 30 1 2.9104 -1.7674 6.2149 31 1 0.0772 -4.0939 -0.4087 32 1 1.2533 -3.3114 -1.5943 33 1 3.1556 -3.6957 0.0394 34 1 1.9795 -4.4780 1.2252 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854590.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:09 Heat of formation + Delta-G solvation = -3.500222 kcal Electronic energy + Delta-G solvation = -18044.930842 eV Core-core repulsion = 15162.544268 eV Total energy + Delta-G solvation = -2882.386574 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.72818 -37.39151 -35.71376 -35.59597 -32.29783 -32.14938 -29.65128 -26.74726 -26.12284 -25.41877 -21.90911 -21.30838 -21.02795 -19.14678 -17.40472 -16.56050 -15.49055 -15.32096 -15.16523 -14.57295 -14.17637 -13.98791 -13.70119 -13.20750 -13.17824 -12.82126 -12.29076 -11.85136 -11.73743 -11.30270 -11.07504 -11.03622 -10.80460 -10.54047 -10.35677 -10.16179 -10.03496 -9.98104 -9.51862 -9.18849 -8.78449 -8.64235 -8.14594 -7.64423 -6.21265 -4.14651 1.38290 1.79301 2.79361 3.23634 3.29959 3.35054 3.92709 4.13429 4.30091 4.85155 4.89108 4.98166 5.28287 5.33308 5.46663 5.56377 5.69902 5.76876 5.97402 6.00211 6.18703 6.23571 6.37350 6.53415 6.62549 6.68438 6.69963 6.76487 6.81329 6.96908 7.15003 7.29579 7.34157 7.82628 8.19370 8.31530 8.76836 9.40536 10.82768 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016416 B = 0.007209 C = 0.006456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.268684 B = 3883.010202 C = 4336.316669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.073 3.927 3 Si 0.889 3.111 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.489 4.489 8 H 0.065 0.935 9 C 0.052 3.948 10 C 0.085 3.915 11 O -0.295 6.295 12 C 0.174 3.826 13 C -0.213 4.213 14 C -0.071 4.071 15 C -0.179 4.179 16 C -0.065 4.065 17 C -0.158 4.158 18 C 0.027 3.973 19 Cl -0.191 7.191 20 C -0.193 4.193 21 C -0.198 4.198 22 H 0.266 0.734 23 H 0.027 0.973 24 H 0.115 0.885 25 H 0.134 0.866 26 H 0.120 0.880 27 H 0.118 0.882 28 H 0.123 0.877 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.149 -2.668 10.819 11.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.130 4.130 3 Si 0.716 3.284 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.526 4.526 8 H 0.083 0.917 9 C 0.051 3.949 10 C 0.011 3.989 11 O -0.207 6.207 12 C 0.125 3.875 13 C -0.232 4.232 14 C -0.089 4.089 15 C -0.198 4.198 16 C -0.083 4.083 17 C -0.159 4.159 18 C -0.035 4.035 19 Cl -0.164 7.164 20 C -0.231 4.231 21 C -0.236 4.236 22 H 0.076 0.924 23 H 0.045 0.955 24 H 0.132 0.868 25 H 0.152 0.848 26 H 0.138 0.862 27 H 0.136 0.864 28 H 0.141 0.859 29 H 0.126 0.874 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.058 -2.679 10.823 11.199 hybrid contribution 0.092 0.760 -0.195 0.790 sum -0.966 -1.919 10.627 10.842 Atomic orbital electron populations 1.69819 1.06270 1.27416 1.47903 1.24946 0.94676 0.99292 0.94046 0.86686 0.80040 0.82605 0.79033 1.20079 1.21186 1.19824 1.20449 0.98784 0.90373 1.42977 0.91713 1.18761 0.95615 0.88831 0.91697 1.22877 0.94106 1.02477 0.79432 1.86124 1.36437 1.84629 1.13489 1.19005 0.90240 0.91103 0.87170 1.21426 0.93660 1.08105 1.00010 1.20962 0.99449 0.96430 0.92059 1.20852 0.94483 1.06903 0.97543 1.20744 0.93974 0.97082 0.96544 1.19013 0.94897 1.10698 0.91320 1.22903 0.93737 0.81500 1.05369 1.98705 1.95719 1.22740 1.99250 1.22999 0.97533 1.06062 0.96467 1.22805 0.95838 1.02862 1.02064 0.92440 0.95459 0.86788 0.84816 0.86203 0.86376 0.85911 0.87377 0.88849 0.91665 0.89858 0.90414 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.52 11.13 55.43 0.62 -22.90 16 2 C 0.07 1.95 5.04 -17.82 -0.09 1.86 16 3 Si 0.89 20.62 29.60 -169.99 -5.03 15.59 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.49 -13.13 8.98 -34.44 -0.31 -13.44 16 8 H 0.06 1.74 7.91 -52.48 -0.42 1.33 16 9 C 0.05 1.27 1.97 -155.66 -0.31 0.96 16 10 C 0.08 1.97 4.41 37.16 0.16 2.13 16 11 O -0.30 -6.53 9.20 -19.43 -0.18 -6.71 16 12 C 0.17 3.33 6.65 -39.21 -0.26 3.07 16 13 C -0.21 -3.79 9.06 -39.43 -0.36 -4.15 16 14 C -0.07 -1.04 10.04 -39.61 -0.40 -1.44 16 15 C -0.18 -2.41 10.04 -39.56 -0.40 -2.80 16 16 C -0.07 -0.90 9.69 -39.61 -0.38 -1.29 16 17 C -0.16 -2.60 5.27 -104.48 -0.55 -3.15 16 18 C 0.03 0.41 6.54 36.00 0.24 0.64 16 19 Cl -0.19 -3.01 29.13 -51.86 -1.51 -4.52 16 20 C -0.19 -4.32 9.88 -26.73 -0.26 -4.58 16 21 C -0.20 -4.37 9.93 -26.73 -0.27 -4.64 16 22 H 0.27 6.80 8.32 -40.82 -0.34 6.46 16 23 H 0.03 0.60 7.73 -51.93 -0.40 0.19 16 24 H 0.11 2.86 4.67 -51.93 -0.24 2.61 16 25 H 0.13 2.44 6.31 -52.48 -0.33 2.11 16 26 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 27 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 28 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 29 H 0.11 1.79 7.60 -51.93 -0.39 1.39 16 30 H 0.09 1.10 8.07 -51.93 -0.42 0.68 16 31 H 0.06 1.36 8.08 -51.92 -0.42 0.94 16 32 H 0.08 1.87 8.14 -51.93 -0.42 1.45 16 33 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 34 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 305.17 15.07 4.60 4.60 Total: -1.00 -27.52 305.17 -8.98 -36.50 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -4.30 Total: 4.27 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: -3.18 Total: -26.83 kcal Atomic # 7 Polarization: -23.52 SS G_CDS: 0.62 Total: -22.90 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -0.18 Total: -6.71 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Atomic # 17 Polarization: -3.01 SS G_CDS: -1.51 Total: -4.52 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.52 -8.98 -36.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854590.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.999 kcal (2) G-P(sol) polarization free energy of solvation -27.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds