Wall clock time and date at job start Mon Mar 30 2020 06:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00294 * 2 1 4 4 H 1.48498 * 109.47234 * 240.00114 * 3 2 1 5 5 H 1.48500 * 109.47097 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46960 * 120.00188 * 3 2 1 7 7 C 1.37884 * 119.99497 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99437 * 158.11896 * 7 2 1 9 9 C 1.50694 * 120.00360 * 338.11825 * 7 2 1 10 10 C 1.53010 * 115.54694 * 324.24353 * 9 7 2 11 11 O 1.42901 * 109.46748 * 279.85722 * 10 9 7 12 12 C 1.35902 * 116.99960 * 179.42924 * 11 10 9 13 13 C 1.38760 * 120.05268 * 354.66017 * 12 11 10 14 14 C 1.38122 * 119.94516 * 180.02562 * 13 12 11 15 15 C 1.38290 * 120.05211 * 0.02562 * 14 13 12 16 16 C 1.38240 * 120.11327 * 359.96556 * 15 14 13 17 17 C 1.38162 * 120.05880 * 0.26926 * 16 15 14 18 18 C 1.50696 * 120.03079 * 179.74843 * 17 16 15 19 19 Cl 1.80294 * 109.47309 * 91.90224 * 18 17 16 20 20 C 1.52995 * 117.51939 * 109.94116 * 9 7 2 21 21 C 1.52999 * 117.50271 * 178.57657 * 9 7 2 22 22 H 0.97001 * 119.99842 * 5.32155 * 1 2 3 23 23 H 1.09001 * 109.47178 * 159.86378 * 10 9 7 24 24 H 1.08993 * 109.47248 * 39.85996 * 10 9 7 25 25 H 1.08004 * 120.02890 * 0.04501 * 13 12 11 26 26 H 1.08001 * 119.97421 * 180.02562 * 14 13 12 27 27 H 1.08004 * 119.94137 * 179.97438 * 15 14 13 28 28 H 1.08006 * 119.96924 * 180.02562 * 16 15 14 29 29 H 1.09005 * 109.47114 * 211.89899 * 18 17 16 30 30 H 1.09001 * 109.46876 * 331.89826 * 18 17 16 31 31 H 1.09008 * 117.50012 * 214.96864 * 20 9 7 32 32 H 1.08995 * 117.50138 * 359.97438 * 20 9 7 33 33 H 1.08999 * 117.49321 * 359.97044 * 21 9 7 34 34 H 1.08995 * 117.50285 * 144.97371 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0261 -1.2277 -0.3492 9 6 1.3324 -2.4524 0.4853 10 6 0.3632 -2.2732 1.6557 11 8 1.1010 -2.1925 2.8768 12 6 0.3859 -2.0194 4.0194 13 6 -0.9857 -1.8182 3.9571 14 6 -1.7102 -1.6419 5.1197 15 6 -1.0698 -1.6654 6.3451 16 6 0.2965 -1.8659 6.4099 17 6 1.0265 -2.0378 5.2496 18 6 2.5167 -2.2507 5.3207 19 17 2.8689 -4.0176 5.3878 20 6 0.9917 -3.5195 -0.5569 21 6 2.1389 -3.7513 0.4286 22 1 -0.4850 0.8364 -0.0779 23 1 -0.3170 -3.1238 1.6977 24 1 -0.2096 -1.3565 1.5160 25 1 -1.4863 -1.7997 3.0002 26 1 -2.7778 -1.4857 5.0717 27 1 -1.6380 -1.5270 7.2531 28 1 0.7942 -1.8842 7.3683 29 1 2.9878 -1.8196 4.4373 30 1 2.9104 -1.7674 6.2149 31 1 0.0772 -4.0939 -0.4087 32 1 1.2533 -3.3114 -1.5943 33 1 3.1556 -3.6957 0.0394 34 1 1.9795 -4.4780 1.2252 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854590.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:09 Heat of formation + Delta-G solvation = -16.071796 kcal Electronic energy + Delta-G solvation = -18045.475987 eV Core-core repulsion = 15162.544268 eV Total energy + Delta-G solvation = -2882.931718 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.09336 -38.95053 -37.34890 -36.80648 -34.29398 -33.36005 -30.90929 -28.41456 -27.52053 -27.23869 -23.27961 -22.96447 -22.35296 -20.99396 -18.79900 -18.39000 -16.95961 -16.85902 -16.59527 -16.29418 -15.63884 -15.35604 -15.16729 -14.71212 -14.39672 -14.23795 -13.80039 -13.51481 -13.28079 -12.86815 -12.83722 -12.51306 -12.35590 -12.19165 -12.09724 -11.76340 -11.40239 -11.27497 -11.24131 -11.06195 -10.66186 -10.05413 -9.83865 -9.00369 -8.20737 -6.20145 0.18729 0.55439 1.37054 1.42049 1.48667 1.61012 2.36460 2.41493 2.91925 2.93357 3.64339 3.66321 3.83946 4.09440 4.23745 4.26336 4.34798 4.40226 4.50073 4.56200 4.60513 4.70732 4.85089 4.90738 5.01149 5.07488 5.15318 5.43137 5.47348 5.49010 5.50403 5.59155 5.82201 5.96987 6.33537 6.66160 6.73809 7.36394 8.82017 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.016416 B = 0.007209 C = 0.006456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.268684 B = 3883.010202 C = 4336.316669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.036 3.964 3 Si 0.943 3.057 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.019 3.981 10 C 0.101 3.899 11 O -0.316 6.316 12 C 0.132 3.868 13 C -0.234 4.234 14 C -0.072 4.072 15 C -0.166 4.166 16 C -0.060 4.060 17 C -0.166 4.166 18 C 0.030 3.970 19 Cl -0.198 7.198 20 C -0.187 4.187 21 C -0.182 4.182 22 H 0.267 0.733 23 H 0.029 0.971 24 H 0.091 0.909 25 H 0.115 0.885 26 H 0.146 0.854 27 H 0.159 0.841 28 H 0.160 0.840 29 H 0.085 0.915 30 H 0.130 0.870 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.422 -2.377 13.198 13.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.166 4.166 3 Si 0.768 3.232 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.200 1.200 7 C -0.550 4.550 8 H 0.072 0.928 9 C 0.018 3.982 10 C 0.027 3.973 11 O -0.229 6.229 12 C 0.085 3.915 13 C -0.253 4.253 14 C -0.090 4.090 15 C -0.184 4.184 16 C -0.078 4.078 17 C -0.167 4.167 18 C -0.032 4.032 19 Cl -0.172 7.172 20 C -0.225 4.225 21 C -0.219 4.219 22 H 0.076 0.924 23 H 0.047 0.953 24 H 0.109 0.891 25 H 0.133 0.867 26 H 0.164 0.836 27 H 0.176 0.824 28 H 0.178 0.822 29 H 0.103 0.897 30 H 0.148 0.852 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.334 -2.395 13.205 13.487 hybrid contribution 0.123 0.655 -0.822 1.058 sum -1.210 -1.740 12.384 12.564 Atomic orbital electron populations 1.69915 1.07139 1.27947 1.48256 1.25548 0.95396 1.01803 0.93821 0.85845 0.79003 0.79410 0.78933 1.19471 1.20527 1.19991 1.20661 0.98542 0.92044 1.43780 0.92828 1.18922 0.97207 0.89002 0.93067 1.22461 0.93526 1.01263 0.80068 1.86055 1.36995 1.85978 1.13890 1.19421 0.91089 0.93895 0.87108 1.21462 0.93562 1.09661 1.00640 1.21313 1.00753 0.95416 0.91547 1.21357 0.94576 1.04104 0.98320 1.21216 0.94357 0.95263 0.96990 1.19311 0.95708 1.10548 0.91121 1.22977 0.93123 0.81003 1.06110 1.98702 1.95720 1.23536 1.99246 1.22986 0.98355 1.05168 0.95945 1.22763 0.95735 1.01509 1.01889 0.92392 0.95262 0.89100 0.86704 0.83591 0.82385 0.82215 0.89676 0.85156 0.90186 0.90298 0.90201 0.90029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.14 11.13 21.45 0.24 -48.90 16 2 C 0.04 1.92 5.04 84.66 0.43 2.35 16 3 Si 0.94 42.82 29.60 68.60 2.03 44.85 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 7 C -0.51 -28.30 8.98 25.60 0.23 -28.07 16 8 H 0.05 2.97 7.91 -2.91 -0.02 2.95 16 9 C 0.02 0.93 1.97 -52.93 -0.10 0.83 16 10 C 0.10 4.87 4.41 71.99 0.32 5.19 16 11 O -0.32 -14.44 9.20 -92.45 -0.85 -15.30 16 12 C 0.13 5.11 6.65 22.51 0.15 5.26 16 13 C -0.23 -8.39 9.06 22.37 0.20 -8.19 16 14 C -0.07 -1.97 10.04 22.25 0.22 -1.74 16 15 C -0.17 -3.76 10.04 22.28 0.22 -3.54 16 16 C -0.06 -1.45 9.69 22.25 0.22 -1.24 16 17 C -0.17 -5.21 5.27 -19.77 -0.10 -5.32 16 18 C 0.03 0.86 6.54 71.23 0.47 1.33 16 19 Cl -0.20 -6.03 29.13 -2.72 -0.08 -6.11 16 20 C -0.19 -8.44 9.88 30.59 0.30 -8.14 16 21 C -0.18 -8.06 9.93 30.60 0.30 -7.76 16 22 H 0.27 13.91 8.32 -92.71 -0.77 13.14 16 23 H 0.03 1.33 7.73 -2.39 -0.02 1.32 16 24 H 0.09 4.77 4.67 -2.39 -0.01 4.76 16 25 H 0.11 4.43 6.31 -2.91 -0.02 4.41 16 26 H 0.15 3.11 8.06 -2.91 -0.02 3.08 16 27 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 28 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 29 H 0.08 2.84 7.60 -2.38 -0.02 2.82 16 30 H 0.13 2.70 8.07 -2.39 -0.02 2.68 16 31 H 0.08 3.33 8.08 -2.38 -0.02 3.31 16 32 H 0.08 3.59 8.14 -2.39 -0.02 3.57 16 33 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 34 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 Total: -1.00 -60.48 305.17 5.28 -55.19 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 1.09 Total: 19.32 kcal Atomic # 6 Polarization: -51.90 SS G_CDS: 2.85 Total: -49.05 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: 0.24 Total: -48.90 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.85 Total: -15.30 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 17 Polarization: -6.03 SS G_CDS: -0.08 Total: -6.11 kcal Total: -60.48 5.28 -55.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854590.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.118 kcal (2) G-P(sol) polarization free energy of solvation -60.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds