Wall clock time and date at job start Mon Mar 30 2020 06:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99619 * 2 1 4 4 H 1.48496 * 109.46660 * 274.49307 * 3 2 1 5 5 H 1.48494 * 109.47308 * 34.49220 * 3 2 1 6 6 H 1.48500 * 109.46997 * 154.49512 * 3 2 1 7 7 C 1.37872 * 120.00064 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00433 * 4.66193 * 7 2 1 9 9 C 1.50707 * 120.00037 * 184.65414 * 7 2 1 10 10 C 1.52998 * 115.54987 * 84.84049 * 9 7 2 11 11 O 1.42899 * 109.46747 * 65.17095 * 10 9 7 12 12 C 1.35900 * 116.99898 * 184.87958 * 11 10 9 13 13 C 1.38739 * 120.05555 * 174.65953 * 12 11 10 14 14 C 1.38145 * 119.93966 * 179.97438 * 13 12 11 15 15 C 1.38266 * 120.05966 * 0.27299 * 14 13 12 16 16 C 1.50701 * 119.94337 * 179.72741 * 15 14 13 17 17 Cl 1.80299 * 109.47064 * 90.00273 * 16 15 14 18 18 C 1.38265 * 120.10991 * 359.45257 * 15 14 13 19 19 C 1.38150 * 120.05614 * 0.54882 * 18 15 14 20 20 C 1.52997 * 117.49626 * 230.51843 * 9 7 2 21 21 C 1.53004 * 117.49529 * 299.17310 * 9 7 2 22 22 H 0.97000 * 120.00219 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47371 * 305.17101 * 10 9 7 24 24 H 1.08998 * 109.47127 * 185.16286 * 10 9 7 25 25 H 1.07991 * 120.02554 * 359.95751 * 13 12 11 26 26 H 1.07999 * 119.96532 * 180.02562 * 14 13 12 27 27 H 1.09000 * 109.46995 * 210.00028 * 16 15 14 28 28 H 1.08997 * 109.46861 * 330.00182 * 16 15 14 29 29 H 1.08001 * 119.97159 * 180.25430 * 18 15 14 30 30 H 1.07992 * 120.02949 * 179.70419 * 19 18 15 31 31 H 1.09009 * 117.49430 * 214.99845 * 20 9 7 32 32 H 1.08999 * 117.50187 * 0.02562 * 20 9 7 33 33 H 1.08997 * 117.50257 * 359.97438 * 21 9 7 34 34 H 1.09006 * 117.49303 * 144.97250 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4015 2.1013 -1.3958 5 1 1.4973 2.6234 0.7928 6 1 3.5909 1.4148 0.6029 7 6 2.0046 -1.1940 0.0005 8 1 1.4673 -2.1278 -0.0751 9 6 3.5079 -1.1961 0.1064 10 6 4.0694 -1.1281 1.5280 11 8 3.7119 -2.3153 2.2385 12 6 4.0471 -2.3714 3.5543 13 6 3.6342 -3.4440 4.3315 14 6 3.9767 -3.4989 5.6686 15 6 4.7256 -2.4833 6.2340 16 6 5.0926 -2.5427 7.6944 17 17 6.6670 -3.4007 7.8840 18 6 5.1431 -1.4161 5.4603 19 6 4.8031 -1.3565 4.1226 20 6 4.2874 -2.0173 -0.9226 21 6 4.2949 -0.4885 -0.9986 22 1 -0.4850 0.8400 -0.0004 23 1 3.6562 -0.2595 2.0408 24 1 5.1552 -1.0430 1.4861 25 1 3.0453 -4.2351 3.8914 26 1 3.6559 -4.3338 6.2739 27 1 5.1808 -1.5303 8.0884 28 1 4.3180 -3.0795 8.2421 29 1 5.7314 -0.6261 5.9032 30 1 5.1254 -0.5204 3.5199 31 1 5.2003 -2.5092 -0.5867 32 1 3.7129 -2.5556 -1.6764 33 1 3.7254 -0.0218 -1.8023 34 1 5.2124 0.0258 -0.7125 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854591.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:12 Heat of formation + Delta-G solvation = -2.656372 kcal Electronic energy + Delta-G solvation = -17419.410608 eV Core-core repulsion = 14537.060626 eV Total energy + Delta-G solvation = -2882.349982 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.86854 -37.84653 -36.37621 -35.78358 -32.14539 -31.53460 -30.91741 -27.47232 -25.88116 -25.22357 -22.59799 -21.76204 -21.08301 -19.10790 -17.79818 -16.62617 -15.63846 -15.48737 -15.40189 -14.63851 -14.37799 -14.34596 -14.09672 -13.60786 -13.21091 -12.85950 -12.62072 -12.33378 -12.13827 -11.87086 -11.19947 -11.15237 -10.74488 -10.60331 -10.56350 -10.49156 -10.40194 -10.16416 -9.63330 -9.14314 -8.88745 -8.66007 -8.56436 -7.84920 -6.15185 -4.17746 1.27029 1.47756 2.45028 3.21531 3.31721 3.32623 3.65354 3.95570 4.35193 4.57691 4.65829 4.89519 5.00679 5.06217 5.13232 5.19890 5.43364 5.56935 5.66311 5.76951 5.86367 5.87853 6.02992 6.13945 6.19383 6.36779 6.37762 6.56036 6.58524 6.62455 6.89867 6.94294 7.03247 7.65368 7.93463 8.46860 8.90560 9.46664 10.96851 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.030157 B = 0.004346 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.246185 B = 6440.894048 C = 6581.498956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.076 3.924 3 Si 0.876 3.124 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.260 1.260 7 C -0.481 4.481 8 H 0.080 0.920 9 C -0.002 4.002 10 C 0.099 3.901 11 O -0.286 6.286 12 C 0.160 3.840 13 C -0.159 4.159 14 C -0.058 4.058 15 C -0.168 4.168 16 C 0.023 3.977 17 Cl -0.192 7.192 18 C -0.056 4.056 19 C -0.218 4.218 20 C -0.173 4.173 21 C -0.190 4.190 22 H 0.265 0.735 23 H 0.059 0.941 24 H 0.039 0.961 25 H 0.133 0.867 26 H 0.126 0.874 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.121 0.879 30 H 0.129 0.871 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.748 -2.914 12.476 16.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.184 1.184 7 C -0.518 4.518 8 H 0.098 0.902 9 C -0.003 4.003 10 C 0.024 3.976 11 O -0.198 6.198 12 C 0.112 3.888 13 C -0.178 4.178 14 C -0.077 4.077 15 C -0.169 4.169 16 C -0.039 4.039 17 Cl -0.166 7.166 18 C -0.075 4.075 19 C -0.237 4.237 20 C -0.211 4.211 21 C -0.228 4.228 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.057 0.943 25 H 0.151 0.849 26 H 0.144 0.856 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.139 0.861 30 H 0.146 0.854 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.582 -2.992 12.353 16.539 hybrid contribution 0.539 1.242 -0.024 1.354 sum 11.121 -1.750 12.329 16.696 Atomic orbital electron populations 1.69898 1.06298 1.27076 1.49879 1.24995 0.94617 0.98921 0.94073 0.86906 0.80552 0.83709 0.78502 1.20310 1.21866 1.18426 1.20227 0.86309 0.94715 1.50597 0.90162 1.19279 0.95122 1.00925 0.85013 1.22770 0.96205 0.85059 0.93586 1.86229 1.75191 1.40938 1.17440 1.19338 0.91187 0.93531 0.84779 1.20458 1.04804 0.99317 0.93223 1.20743 0.95830 0.97062 0.94037 1.19438 1.04864 0.97789 0.94776 1.23051 0.86159 0.99613 0.95104 1.98728 1.38418 1.81364 1.98065 1.20728 0.96895 0.96855 0.92994 1.21307 1.04818 1.00990 0.96609 1.22833 1.01354 0.92652 1.04217 1.23004 1.01281 0.95269 1.03207 0.92509 0.92266 0.94313 0.84858 0.85573 0.88503 0.88389 0.86069 0.85351 0.90750 0.89195 0.88940 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.86 13.96 55.43 0.77 -26.09 16 2 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 3 Si 0.88 20.90 24.94 -169.99 -4.24 16.66 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.26 -5.73 5.69 56.52 0.32 -5.41 16 7 C -0.48 -13.30 9.36 -34.44 -0.32 -13.62 16 8 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 9 C 0.00 -0.05 1.03 -155.66 -0.16 -0.21 16 10 C 0.10 2.05 4.18 37.16 0.16 2.20 16 11 O -0.29 -6.00 10.07 -19.43 -0.20 -6.20 16 12 C 0.16 2.83 6.68 -39.21 -0.26 2.57 16 13 C -0.16 -2.46 9.99 -39.43 -0.39 -2.86 16 14 C -0.06 -0.74 9.69 -39.61 -0.38 -1.13 16 15 C -0.17 -2.03 5.26 -104.60 -0.55 -2.58 16 16 C 0.02 0.21 6.78 36.01 0.24 0.45 16 17 Cl -0.19 -2.08 29.13 -51.86 -1.51 -3.59 16 18 C -0.06 -0.74 9.69 -39.60 -0.38 -1.12 16 19 C -0.22 -3.41 9.03 -39.43 -0.36 -3.77 16 20 C -0.17 -3.48 9.96 -26.70 -0.27 -3.74 16 21 C -0.19 -3.88 7.32 -26.69 -0.20 -4.07 16 22 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 23 H 0.06 1.26 6.54 -51.93 -0.34 0.92 16 24 H 0.04 0.70 7.67 -51.93 -0.40 0.30 16 25 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 26 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 27 H 0.10 0.73 8.09 -51.93 -0.42 0.31 16 28 H 0.10 0.73 8.08 -51.93 -0.42 0.31 16 29 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 30 H 0.13 1.93 6.33 -52.49 -0.33 1.60 16 31 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 32 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 33 H 0.09 1.95 7.13 -51.93 -0.37 1.58 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 301.24 15.07 4.54 4.54 Total: -1.00 -29.95 301.24 -8.06 -38.01 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -4.45 Total: 2.49 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: -2.97 Total: -25.83 kcal Atomic # 7 Polarization: -26.86 SS G_CDS: 0.77 Total: -26.09 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.20 Total: -6.20 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.24 Total: 16.66 kcal Atomic # 17 Polarization: -2.08 SS G_CDS: -1.51 Total: -3.59 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.95 -8.06 -38.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854591.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.357 kcal (2) G-P(sol) polarization free energy of solvation -29.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds