Wall clock time and date at job start Mon Mar 30 2020 06:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99619 * 2 1 4 4 H 1.48496 * 109.46660 * 274.49307 * 3 2 1 5 5 H 1.48494 * 109.47308 * 34.49220 * 3 2 1 6 6 H 1.48500 * 109.46997 * 154.49512 * 3 2 1 7 7 C 1.37872 * 120.00064 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00433 * 4.66193 * 7 2 1 9 9 C 1.50707 * 120.00037 * 184.65414 * 7 2 1 10 10 C 1.52998 * 115.54987 * 84.84049 * 9 7 2 11 11 O 1.42899 * 109.46747 * 65.17095 * 10 9 7 12 12 C 1.35900 * 116.99898 * 184.87958 * 11 10 9 13 13 C 1.38739 * 120.05555 * 174.65953 * 12 11 10 14 14 C 1.38145 * 119.93966 * 179.97438 * 13 12 11 15 15 C 1.38266 * 120.05966 * 0.27299 * 14 13 12 16 16 C 1.50701 * 119.94337 * 179.72741 * 15 14 13 17 17 Cl 1.80299 * 109.47064 * 90.00273 * 16 15 14 18 18 C 1.38265 * 120.10991 * 359.45257 * 15 14 13 19 19 C 1.38150 * 120.05614 * 0.54882 * 18 15 14 20 20 C 1.52997 * 117.49626 * 230.51843 * 9 7 2 21 21 C 1.53004 * 117.49529 * 299.17310 * 9 7 2 22 22 H 0.97000 * 120.00219 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47371 * 305.17101 * 10 9 7 24 24 H 1.08998 * 109.47127 * 185.16286 * 10 9 7 25 25 H 1.07991 * 120.02554 * 359.95751 * 13 12 11 26 26 H 1.07999 * 119.96532 * 180.02562 * 14 13 12 27 27 H 1.09000 * 109.46995 * 210.00028 * 16 15 14 28 28 H 1.08997 * 109.46861 * 330.00182 * 16 15 14 29 29 H 1.08001 * 119.97159 * 180.25430 * 18 15 14 30 30 H 1.07992 * 120.02949 * 179.70419 * 19 18 15 31 31 H 1.09009 * 117.49430 * 214.99845 * 20 9 7 32 32 H 1.08999 * 117.50187 * 0.02562 * 20 9 7 33 33 H 1.08997 * 117.50257 * 359.97438 * 21 9 7 34 34 H 1.09006 * 117.49303 * 144.97250 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4015 2.1013 -1.3958 5 1 1.4973 2.6234 0.7928 6 1 3.5909 1.4148 0.6029 7 6 2.0046 -1.1940 0.0005 8 1 1.4673 -2.1278 -0.0751 9 6 3.5079 -1.1961 0.1064 10 6 4.0694 -1.1281 1.5280 11 8 3.7119 -2.3153 2.2385 12 6 4.0471 -2.3714 3.5543 13 6 3.6342 -3.4440 4.3315 14 6 3.9767 -3.4989 5.6686 15 6 4.7256 -2.4833 6.2340 16 6 5.0926 -2.5427 7.6944 17 17 6.6670 -3.4007 7.8840 18 6 5.1431 -1.4161 5.4603 19 6 4.8031 -1.3565 4.1226 20 6 4.2874 -2.0173 -0.9226 21 6 4.2949 -0.4885 -0.9986 22 1 -0.4850 0.8400 -0.0004 23 1 3.6562 -0.2595 2.0408 24 1 5.1552 -1.0430 1.4861 25 1 3.0453 -4.2351 3.8914 26 1 3.6559 -4.3338 6.2739 27 1 5.1808 -1.5303 8.0884 28 1 4.3180 -3.0795 8.2421 29 1 5.7314 -0.6261 5.9032 30 1 5.1254 -0.5204 3.5199 31 1 5.2003 -2.5092 -0.5867 32 1 3.7129 -2.5556 -1.6764 33 1 3.7254 -0.0218 -1.8023 34 1 5.2124 0.0258 -0.7125 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854591.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:12 Heat of formation + Delta-G solvation = -19.713160 kcal Electronic energy + Delta-G solvation = -17420.150245 eV Core-core repulsion = 14537.060626 eV Total energy + Delta-G solvation = -2883.089620 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.11714 -39.22130 -37.81423 -36.68702 -34.27365 -32.57895 -32.00243 -28.97253 -27.53203 -26.61156 -23.74717 -23.36327 -22.20682 -20.91397 -19.11128 -18.45606 -17.16228 -16.89300 -16.54251 -16.23614 -15.57223 -15.40177 -15.27127 -14.80452 -14.68991 -14.45513 -13.98549 -13.65372 -13.43269 -13.06893 -13.00874 -12.79390 -12.23193 -12.08582 -11.90213 -11.80781 -11.46226 -11.37202 -11.25392 -10.99901 -10.61212 -10.38373 -9.97167 -9.05851 -8.30936 -6.38923 0.22166 0.38747 1.34452 1.35559 1.48384 1.61175 2.26982 2.35140 2.87027 3.02081 3.29206 3.68593 3.78313 3.94313 3.99522 4.17618 4.24064 4.28851 4.36658 4.38434 4.48756 4.57731 4.67622 4.77617 4.80889 5.01608 5.06771 5.23053 5.26699 5.42669 5.44882 5.53040 5.65312 5.85093 6.28166 6.58799 6.70082 7.29640 8.85450 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.030157 B = 0.004346 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.246185 B = 6440.894048 C = 6581.498956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.017 3.983 3 Si 0.940 3.060 4 H -0.266 1.266 5 H -0.296 1.296 6 H -0.225 1.225 7 C -0.485 4.485 8 H 0.023 0.977 9 C -0.037 4.037 10 C 0.107 3.893 11 O -0.321 6.321 12 C 0.119 3.881 13 C -0.177 4.177 14 C -0.055 4.055 15 C -0.158 4.158 16 C 0.026 3.974 17 Cl -0.203 7.203 18 C -0.057 4.057 19 C -0.227 4.227 20 C -0.163 4.163 21 C -0.174 4.174 22 H 0.266 0.734 23 H 0.047 0.953 24 H 0.071 0.929 25 H 0.127 0.873 26 H 0.155 0.845 27 H 0.120 0.880 28 H 0.120 0.880 29 H 0.151 0.849 30 H 0.132 0.868 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.759 -1.736 14.417 20.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.180 4.180 3 Si 0.763 3.237 4 H -0.191 1.191 5 H -0.223 1.223 6 H -0.148 1.148 7 C -0.523 4.523 8 H 0.041 0.959 9 C -0.038 4.038 10 C 0.032 3.968 11 O -0.235 6.235 12 C 0.073 3.927 13 C -0.196 4.196 14 C -0.073 4.073 15 C -0.159 4.159 16 C -0.036 4.036 17 Cl -0.177 7.177 18 C -0.075 4.075 19 C -0.245 4.245 20 C -0.200 4.200 21 C -0.211 4.211 22 H 0.075 0.925 23 H 0.065 0.935 24 H 0.089 0.911 25 H 0.145 0.855 26 H 0.173 0.827 27 H 0.138 0.862 28 H 0.139 0.861 29 H 0.168 0.832 30 H 0.150 0.850 31 H 0.121 0.879 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 13.625 -1.839 14.302 19.838 hybrid contribution -0.454 0.706 -0.526 0.991 sum 13.171 -1.132 13.776 19.093 Atomic orbital electron populations 1.70069 1.08533 1.28150 1.52255 1.25926 0.95331 1.03170 0.93603 0.85870 0.80597 0.78032 0.79172 1.19131 1.22328 1.14757 1.20359 0.89433 0.92588 1.49892 0.95878 1.19231 0.92482 1.04702 0.87403 1.22541 0.97630 0.84818 0.91782 1.86160 1.76680 1.41175 1.19441 1.19680 0.93598 0.95530 0.83892 1.20653 1.05377 0.99029 0.94522 1.21084 0.95141 0.98112 0.92965 1.19818 1.03054 0.96671 0.96337 1.23230 0.85971 1.01312 0.93077 1.98736 1.39279 1.81690 1.97977 1.21094 0.96518 0.97838 0.92019 1.21446 1.04705 1.00496 0.97892 1.22867 1.01564 0.93106 1.02452 1.23076 1.01637 0.95417 1.00961 0.92512 0.93463 0.91128 0.85520 0.82737 0.86202 0.86122 0.83171 0.84993 0.87871 0.90380 0.89895 0.87063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.94 13.96 21.45 0.30 -59.65 16 2 C 0.02 0.97 5.47 84.65 0.46 1.44 16 3 Si 0.94 42.95 24.94 68.60 1.71 44.66 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 5 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.23 -8.95 5.69 99.48 0.57 -8.38 16 7 C -0.49 -28.08 9.36 25.60 0.24 -27.84 16 8 H 0.02 1.53 8.06 -2.91 -0.02 1.51 16 9 C -0.04 -1.69 1.03 -52.93 -0.05 -1.75 16 10 C 0.11 4.34 4.18 71.98 0.30 4.64 16 11 O -0.32 -13.79 10.07 -92.42 -0.93 -14.72 16 12 C 0.12 4.24 6.68 22.51 0.15 4.39 16 13 C -0.18 -5.49 9.99 22.37 0.22 -5.27 16 14 C -0.05 -1.29 9.69 22.25 0.22 -1.07 16 15 C -0.16 -3.32 5.26 -19.85 -0.10 -3.42 16 16 C 0.03 0.37 6.78 71.24 0.48 0.85 16 17 Cl -0.20 -3.74 29.13 -2.72 -0.08 -3.82 16 18 C -0.06 -1.31 9.69 22.26 0.22 -1.09 16 19 C -0.23 -6.74 9.03 22.37 0.20 -6.54 16 20 C -0.16 -6.33 9.96 30.62 0.30 -6.02 16 21 C -0.17 -6.61 7.32 30.62 0.22 -6.39 16 22 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 23 H 0.05 1.97 6.54 -2.39 -0.02 1.95 16 24 H 0.07 2.36 7.67 -2.39 -0.02 2.34 16 25 H 0.13 3.92 8.06 -2.92 -0.02 3.89 16 26 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 27 H 0.12 1.22 8.09 -2.39 -0.02 1.20 16 28 H 0.12 1.23 8.08 -2.39 -0.02 1.21 16 29 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 30 H 0.13 3.71 6.33 -2.91 -0.02 3.69 16 31 H 0.10 3.41 8.14 -2.38 -0.02 3.39 16 32 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 33 H 0.08 3.32 7.13 -2.39 -0.02 3.30 16 34 H 0.11 3.43 8.14 -2.38 -0.02 3.41 16 Total: -1.00 -69.55 301.24 4.81 -64.73 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.95 Total: 16.86 kcal Atomic # 6 Polarization: -50.93 SS G_CDS: 2.86 Total: -48.06 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: 0.30 Total: -59.65 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.93 Total: -14.72 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 1.71 Total: 44.66 kcal Atomic # 17 Polarization: -3.74 SS G_CDS: -0.08 Total: -3.82 kcal Total: -69.55 4.81 -64.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854591.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.020 kcal (2) G-P(sol) polarization free energy of solvation -69.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds