Wall clock time and date at job start Mon Mar 30 2020 06:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99752 * 2 1 4 4 H 1.48504 * 109.47220 * 240.00035 * 3 2 1 5 5 H 1.48493 * 109.47400 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47247 * 120.00069 * 3 2 1 7 7 C 1.37875 * 120.00446 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00407 * 173.70147 * 7 2 1 9 9 C 1.50700 * 119.99856 * 353.70994 * 7 2 1 10 10 C 1.53004 * 115.55247 * 86.10687 * 9 7 2 11 11 O 1.42901 * 109.47053 * 65.11438 * 10 9 7 12 12 C 1.35891 * 116.99804 * 180.02562 * 11 10 9 13 13 C 1.38754 * 120.06121 * 359.97438 * 12 11 10 14 14 C 1.38115 * 119.94533 * 179.97438 * 13 12 11 15 15 C 1.38287 * 120.05945 * 0.25811 * 14 13 12 16 16 C 1.38241 * 120.10859 * 359.48747 * 15 14 13 17 17 C 1.50706 * 119.97337 * 180.25353 * 16 15 14 18 18 Cl 1.80293 * 109.47250 * 270.25862 * 17 16 15 19 19 C 1.38171 * 120.05581 * 0.51201 * 16 15 14 20 20 C 1.53000 * 117.49934 * 231.78136 * 9 7 2 21 21 C 1.53000 * 117.49445 * 300.43951 * 9 7 2 22 22 H 0.97002 * 120.00068 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46756 * 305.11267 * 10 9 7 24 24 H 1.09002 * 109.46677 * 185.11232 * 10 9 7 25 25 H 1.07997 * 120.02092 * 359.96594 * 13 12 11 26 26 H 1.08005 * 119.96912 * 179.97438 * 14 13 12 27 27 H 1.08001 * 119.94895 * 179.74335 * 15 14 13 28 28 H 1.09002 * 109.46947 * 30.25524 * 17 16 15 29 29 H 1.09004 * 109.46955 * 150.25766 * 17 16 15 30 30 H 1.08001 * 120.02739 * 179.76852 * 19 16 15 31 31 H 1.08997 * 117.50081 * 215.00137 * 20 9 7 32 32 H 1.09000 * 117.49650 * 0.02562 * 20 9 7 33 33 H 1.08995 * 117.50425 * 359.97438 * 21 9 7 34 34 H 1.09008 * 117.50012 * 144.97736 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0798 -1.1968 -0.1021 9 6 1.2580 -2.4951 0.1441 10 6 0.7194 -3.0940 -1.1568 11 8 1.8127 -3.4600 -2.0011 12 6 1.5051 -4.0106 -3.2048 13 6 0.1782 -4.1953 -3.5659 14 6 -0.1318 -4.7546 -4.7901 15 6 0.8791 -5.1354 -5.6536 16 6 2.2018 -4.9476 -5.2984 17 6 3.3010 -5.3584 -6.2442 18 17 3.7639 -7.0705 -5.9202 19 6 2.5172 -4.3885 -4.0749 20 6 1.7341 -3.4672 1.2254 21 6 0.4254 -2.6955 1.4120 22 1 -0.4850 0.8401 0.0004 23 1 0.0979 -2.3573 -1.6659 24 1 0.1234 -3.9781 -0.9303 25 1 -0.6116 -3.9021 -2.8901 26 1 -1.1645 -4.8990 -5.0714 27 1 0.6348 -5.5763 -6.6087 28 1 2.9497 -5.2652 -7.2718 29 1 4.1673 -4.7135 -6.0964 30 1 3.5508 -4.2454 -3.7963 31 1 1.6638 -4.5334 1.0100 32 1 2.5871 -3.1655 1.8332 33 1 0.4179 -1.8866 2.1424 34 1 -0.5063 -3.2538 1.3193 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854592.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:52 Heat of formation + Delta-G solvation = -7.974229 kcal Electronic energy + Delta-G solvation = -17400.291782 eV Core-core repulsion = 14517.711200 eV Total energy + Delta-G solvation = -2882.580582 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.73571 -37.59669 -36.12713 -35.68925 -32.07679 -31.98207 -30.00436 -26.95860 -26.32538 -25.20370 -22.31157 -21.25855 -20.94490 -19.17029 -17.35483 -16.44764 -15.72229 -15.40748 -15.06647 -14.58929 -14.42674 -14.29307 -13.99040 -13.38411 -13.24219 -12.87071 -12.33322 -11.95453 -11.65434 -11.57434 -11.09567 -10.97407 -10.75442 -10.58793 -10.49050 -10.40199 -10.37533 -10.20095 -9.61746 -8.89928 -8.71826 -8.48584 -8.24800 -7.76273 -6.10071 -4.14455 1.20622 1.70211 2.47227 3.29135 3.33417 3.36874 3.82846 4.03301 4.37626 4.58666 4.78795 5.07971 5.19239 5.22761 5.29921 5.34246 5.47285 5.68733 5.80990 5.91749 6.12996 6.20506 6.25131 6.45708 6.50903 6.60385 6.64809 6.70175 6.72658 6.99084 7.02782 7.31931 7.40960 7.84058 8.11821 8.37559 8.87043 9.51418 10.99420 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.023747 B = 0.004488 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.811021 B = 6236.702530 C = 6430.597633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.070 3.930 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.488 4.488 8 H 0.062 0.938 9 C 0.039 3.961 10 C 0.105 3.895 11 O -0.294 6.294 12 C 0.150 3.850 13 C -0.204 4.204 14 C -0.081 4.081 15 C -0.155 4.155 16 C -0.076 4.076 17 C 0.015 3.985 18 Cl -0.183 7.183 19 C -0.142 4.142 20 C -0.205 4.205 21 C -0.145 4.145 22 H 0.261 0.739 23 H 0.069 0.931 24 H 0.031 0.969 25 H 0.130 0.870 26 H 0.122 0.878 27 H 0.119 0.881 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.130 0.870 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.380 -9.321 -10.595 14.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.133 4.133 3 Si 0.720 3.280 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.525 4.525 8 H 0.080 0.920 9 C 0.038 3.962 10 C 0.030 3.970 11 O -0.206 6.206 12 C 0.102 3.898 13 C -0.223 4.223 14 C -0.099 4.099 15 C -0.174 4.174 16 C -0.076 4.076 17 C -0.047 4.047 18 Cl -0.156 7.156 19 C -0.161 4.161 20 C -0.243 4.243 21 C -0.182 4.182 22 H 0.071 0.929 23 H 0.087 0.913 24 H 0.049 0.951 25 H 0.148 0.852 26 H 0.140 0.860 27 H 0.137 0.863 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.148 0.852 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.440 -9.262 -10.464 14.048 hybrid contribution 0.030 0.902 0.040 0.903 sum 1.470 -8.360 -10.424 13.443 Atomic orbital electron populations 1.69981 1.05891 1.26776 1.49410 1.24987 0.94856 0.99027 0.94453 0.86653 0.79677 0.82878 0.78816 1.20132 1.21267 1.20112 1.20351 0.93091 0.88355 1.50748 0.91983 1.18723 0.98906 0.94204 0.84326 1.22655 0.86748 0.96120 0.91470 1.86205 1.36798 1.73435 1.24130 1.19184 0.92632 0.91290 0.86689 1.21451 0.95960 1.05798 0.99131 1.20859 0.98992 0.96830 0.93198 1.20742 0.91860 1.04252 1.00505 1.19347 0.93860 0.99724 0.94676 1.23146 0.98611 0.83160 0.99827 1.98729 1.93576 1.26385 1.96919 1.20250 0.98974 1.03807 0.93090 1.23010 0.98526 0.95771 1.06943 1.22531 0.92228 1.01194 1.02287 0.92901 0.91297 0.95110 0.85181 0.86001 0.86314 0.88102 0.87981 0.85214 0.91508 0.90098 0.89456 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.39 12.88 55.43 0.71 -23.68 16 2 C 0.07 1.88 5.38 -17.82 -0.10 1.78 16 3 Si 0.89 20.97 29.54 -169.99 -5.02 15.94 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.49 -13.25 8.77 -34.44 -0.30 -13.55 16 8 H 0.06 1.71 7.82 -52.48 -0.41 1.30 16 9 C 0.04 0.95 1.62 -155.66 -0.25 0.70 16 10 C 0.10 2.34 4.56 37.16 0.17 2.51 16 11 O -0.29 -6.43 10.06 -19.40 -0.20 -6.63 16 12 C 0.15 2.77 6.69 -39.22 -0.26 2.51 16 13 C -0.20 -3.39 9.04 -39.44 -0.36 -3.75 16 14 C -0.08 -1.11 10.04 -39.61 -0.40 -1.50 16 15 C -0.15 -1.97 9.70 -39.56 -0.38 -2.35 16 16 C -0.08 -1.00 5.26 -104.64 -0.55 -1.55 16 17 C 0.01 0.15 6.78 36.01 0.24 0.40 16 18 Cl -0.18 -2.13 29.13 -51.86 -1.51 -3.64 16 19 C -0.14 -2.28 9.64 -39.43 -0.38 -2.66 16 20 C -0.21 -4.48 9.96 -26.69 -0.27 -4.74 16 21 C -0.14 -3.30 9.37 -26.69 -0.25 -3.55 16 22 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 23 H 0.07 1.65 7.66 -51.93 -0.40 1.25 16 24 H 0.03 0.62 7.61 -51.93 -0.40 0.23 16 25 H 0.13 2.14 6.30 -52.49 -0.33 1.81 16 26 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 27 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 28 H 0.10 0.79 8.09 -51.93 -0.42 0.37 16 29 H 0.10 0.91 8.08 -51.93 -0.42 0.49 16 30 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 31 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 33 H 0.09 2.11 8.14 -51.93 -0.42 1.68 16 34 H 0.06 1.35 8.14 -51.92 -0.42 0.93 16 LS Contribution 310.36 15.07 4.68 4.68 Total: -1.00 -28.39 310.36 -8.89 -37.28 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -4.47 Total: 1.79 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: -3.08 Total: -25.74 kcal Atomic # 7 Polarization: -24.39 SS G_CDS: 0.71 Total: -23.68 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.20 Total: -6.63 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 17 Polarization: -2.13 SS G_CDS: -1.51 Total: -3.64 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.39 -8.89 -37.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854592.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.304 kcal (2) G-P(sol) polarization free energy of solvation -28.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds