Wall clock time and date at job start Mon Mar 30 2020 07:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35926 * 117.00617 * 2 1 4 4 C 1.38856 * 120.05899 * 270.30060 * 3 2 1 5 5 Cl 1.73602 * 120.03848 * 359.97438 * 4 3 2 6 6 C 1.38214 * 119.92134 * 180.31043 * 4 3 2 7 7 C 1.38290 * 120.04325 * 359.66103 * 6 4 3 8 8 C 1.38233 * 120.11773 * 0.02562 * 7 6 4 9 9 C 1.38190 * 120.07877 * 0.02562 * 8 7 6 10 10 C 1.50700 * 120.02346 * 179.97438 * 9 8 7 11 11 H 1.09004 * 109.47406 * 180.02562 * 10 9 8 12 12 C 1.50706 * 109.47062 * 299.99721 * 10 9 8 13 13 H 1.07998 * 119.99503 * 0.02562 * 12 10 9 14 14 C 1.37871 * 120.00434 * 179.97438 * 12 10 9 15 15 N 1.31516 * 119.99826 * 359.72891 * 14 12 10 16 16 Si 1.86800 * 120.00406 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47364 * 179.72558 * 16 14 12 18 18 H 1.48508 * 109.46883 * 299.72681 * 16 14 12 19 19 H 1.48497 * 109.46870 * 59.72491 * 16 14 12 20 20 C 1.52991 * 109.47315 * 59.99984 * 10 9 8 21 21 C 1.53003 * 117.50168 * 128.75262 * 20 10 9 22 22 C 1.52998 * 117.49954 * 60.08957 * 20 10 9 23 23 H 1.08999 * 109.47124 * 60.00195 * 1 2 3 24 24 H 1.08997 * 109.47314 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46700 * 300.00269 * 1 2 3 26 26 H 1.07999 * 119.97847 * 179.67930 * 6 4 3 27 27 H 1.07997 * 119.94147 * 179.97438 * 7 6 4 28 28 H 1.07998 * 119.96210 * 180.02562 * 8 7 6 29 29 H 0.97000 * 120.00236 * 0.27947 * 15 14 12 30 30 H 1.08999 * 115.55163 * 274.41883 * 20 10 9 31 31 H 1.09002 * 117.49518 * 359.97438 * 21 20 10 32 32 H 1.08993 * 117.50661 * 145.02064 * 21 20 10 33 33 H 1.08997 * 117.50075 * 214.98129 * 22 20 10 34 34 H 1.09002 * 117.49630 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2110 0.0000 4 6 2.3564 1.8336 -1.2018 5 17 1.9570 1.0658 -2.7067 6 6 2.9898 3.0620 -1.1985 7 6 3.3080 3.6738 0.0002 8 6 2.9941 3.0585 1.1976 9 6 2.3618 1.8298 1.2002 10 6 2.0207 1.1600 2.5063 11 1 1.5302 0.2068 2.3087 12 6 3.2837 0.9207 3.2929 13 1 4.2378 1.2238 2.8877 14 6 3.2211 0.3158 4.5303 15 7 2.0586 -0.0475 5.0265 16 14 4.7865 0.0198 5.5057 17 1 4.4498 -0.6338 6.7959 18 1 5.6957 -0.8597 4.7276 19 1 5.4586 1.3176 5.7688 20 6 1.0814 2.0603 3.3112 21 6 -0.2069 1.4350 3.8500 22 6 -0.2649 2.4204 2.6799 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8900 26 1 3.2362 3.5447 -2.1327 27 1 3.8033 4.6335 0.0009 28 1 3.2434 3.5387 2.1323 29 1 1.2457 0.1063 4.5202 30 1 1.5681 2.8180 3.9253 31 1 -0.3855 0.3824 3.6306 32 1 -0.5680 1.7816 4.8182 33 1 -0.6641 3.4149 2.8790 34 1 -0.4813 2.0163 1.6910 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084425231.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:58 Heat of formation + Delta-G solvation = -14.951432 kcal Electronic energy + Delta-G solvation = -18544.847510 eV Core-core repulsion = 15661.964374 eV Total energy + Delta-G solvation = -2882.883136 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.27244 -38.73745 -38.21707 -37.33125 -34.75589 -32.76292 -31.09521 -28.80190 -27.71078 -25.36467 -23.68053 -23.32791 -22.76298 -21.04760 -18.93677 -18.68317 -17.43206 -17.03334 -16.64108 -16.13297 -15.62615 -15.36474 -15.29832 -14.92379 -14.57785 -14.12347 -13.84072 -13.35366 -12.93648 -12.80677 -12.65219 -12.50067 -12.23151 -12.16945 -12.02766 -11.93969 -11.76233 -11.36175 -11.05854 -10.77550 -10.49657 -10.28318 -9.55176 -9.47250 -8.41275 -6.21980 0.13249 0.34104 1.12407 1.54946 1.61632 1.80571 2.49411 2.62592 2.93209 3.04006 3.28529 3.84886 3.95917 4.13092 4.21183 4.22236 4.32155 4.33437 4.41184 4.47385 4.50640 4.59865 4.77710 4.85273 4.94927 5.05770 5.20071 5.24033 5.27705 5.41713 5.50767 5.79483 5.81445 6.15100 6.34116 6.50561 6.82141 7.58269 8.97139 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.020718 B = 0.007205 C = 0.006628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.168187 B = 3885.087892 C = 4223.296853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.346 6.346 3 C 0.071 3.929 4 C -0.063 4.063 5 Cl -0.064 7.064 6 C -0.114 4.114 7 C -0.103 4.103 8 C -0.104 4.104 9 C -0.056 4.056 10 C 0.100 3.900 11 H 0.005 0.995 12 C -0.604 4.604 13 H 0.040 0.960 14 C -0.020 4.020 15 N -0.941 5.941 16 Si 1.104 2.896 17 H -0.286 1.286 18 H -0.281 1.281 19 H -0.270 1.270 20 C -0.123 4.123 21 C -0.172 4.172 22 C -0.177 4.177 23 H 0.058 0.942 24 H 0.106 0.894 25 H 0.043 0.957 26 H 0.163 0.837 27 H 0.167 0.833 28 H 0.125 0.875 29 H 0.282 0.718 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.330 7.352 -11.291 13.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.263 6.263 3 C 0.027 3.973 4 C -0.090 4.090 5 Cl -0.035 7.035 6 C -0.132 4.132 7 C -0.121 4.121 8 C -0.122 4.122 9 C -0.057 4.057 10 C 0.082 3.918 11 H 0.023 0.977 12 C -0.642 4.642 13 H 0.059 0.941 14 C -0.221 4.221 15 N -0.580 5.580 16 Si 0.927 3.073 17 H -0.211 1.211 18 H -0.207 1.207 19 H -0.196 1.196 20 C -0.142 4.142 21 C -0.209 4.209 22 C -0.214 4.214 23 H 0.077 0.923 24 H 0.125 0.875 25 H 0.061 0.939 26 H 0.181 0.819 27 H 0.184 0.816 28 H 0.143 0.857 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.124 0.876 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.737 6.481 -10.018 12.057 hybrid contribution -0.867 0.205 -1.192 1.488 sum -2.604 6.686 -11.209 13.309 Atomic orbital electron populations 1.23229 0.78181 1.04270 1.00823 1.86012 1.21020 1.25019 1.94212 1.18519 1.00358 0.87312 0.91130 1.21443 1.05710 0.95995 0.85875 1.98320 1.92796 1.81727 1.30652 1.21190 0.98925 0.92698 1.00384 1.21455 0.99164 1.01103 0.90395 1.21163 0.97364 0.94312 0.99372 1.20474 0.96454 0.94485 0.94306 1.17330 0.94391 0.91774 0.88327 0.97697 1.22133 0.92770 1.44068 1.05250 0.94132 1.26870 1.05007 0.93199 0.96977 1.70806 0.99940 1.45307 1.41911 0.83098 0.71917 0.77262 0.74992 1.21146 1.20690 1.19574 1.22388 0.88681 1.01266 1.01878 1.22724 1.02889 0.97391 0.97915 1.23169 1.01381 1.00035 0.96789 0.92320 0.87532 0.93870 0.81907 0.81571 0.85717 0.90356 0.90573 0.90938 0.89293 0.87616 0.89381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.92 10.88 113.37 1.23 2.15 16 2 O -0.35 -14.03 8.72 -92.72 -0.81 -14.84 16 3 C 0.07 2.81 5.69 22.52 0.13 2.94 16 4 C -0.06 -2.07 6.33 22.41 0.14 -1.93 16 5 Cl -0.06 -1.83 28.51 -2.72 -0.08 -1.91 16 6 C -0.11 -3.07 9.83 22.28 0.22 -2.85 16 7 C -0.10 -2.84 10.04 22.28 0.22 -2.62 16 8 C -0.10 -3.76 8.82 22.26 0.20 -3.57 16 9 C -0.06 -2.38 4.40 -19.77 -0.09 -2.47 16 10 C 0.10 4.93 1.82 -12.29 -0.02 4.90 16 11 H 0.01 0.28 6.36 -2.39 -0.02 0.26 16 12 C -0.60 -33.49 8.22 25.60 0.21 -33.28 16 13 H 0.04 2.26 7.60 -2.91 -0.02 2.24 16 14 C -0.02 -1.10 5.31 84.65 0.45 -0.65 16 15 N -0.94 -55.57 13.37 21.45 0.29 -55.29 16 16 Si 1.10 50.40 29.90 68.60 2.05 52.45 16 17 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 18 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 19 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 20 C -0.12 -5.48 3.86 -10.80 -0.04 -5.52 16 21 C -0.17 -7.11 8.13 30.62 0.25 -6.86 16 22 C -0.18 -6.33 9.83 30.62 0.30 -6.03 16 23 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 25 H 0.04 1.45 5.46 -2.39 -0.01 1.44 16 26 H 0.16 3.23 8.06 -2.91 -0.02 3.20 16 27 H 0.17 3.20 8.06 -2.91 -0.02 3.18 16 28 H 0.12 4.60 8.05 -2.91 -0.02 4.58 16 29 H 0.28 16.09 3.55 -92.71 -0.33 15.76 16 30 H 0.08 3.59 8.11 -2.39 -0.02 3.57 16 31 H 0.07 3.19 7.43 -2.39 -0.02 3.17 16 32 H 0.09 3.51 8.14 -2.39 -0.02 3.50 16 33 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 34 H 0.09 3.05 5.56 -2.39 -0.01 3.03 16 Total: -1.00 -64.64 295.78 6.20 -58.44 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 1.54 Total: 16.94 kcal Atomic # 6 Polarization: -59.00 SS G_CDS: 3.20 Total: -55.80 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: 0.29 Total: -55.29 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.81 Total: -14.84 kcal Atomic # 14 Polarization: 50.40 SS G_CDS: 2.05 Total: 52.45 kcal Atomic # 17 Polarization: -1.83 SS G_CDS: -0.08 Total: -1.91 kcal Total: -64.64 6.20 -58.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084425231.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.491 kcal (2) G-P(sol) polarization free energy of solvation -64.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds