Wall clock time and date at job start Mon Mar 30 2020 07:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35921 * 117.00534 * 2 1 4 4 C 1.38746 * 120.03789 * 0.02562 * 3 2 1 5 5 C 1.38126 * 119.95501 * 179.71816 * 4 3 2 6 6 C 1.38384 * 120.04585 * 0.26040 * 5 4 3 7 7 Cl 1.73597 * 119.95999 * 179.97438 * 6 5 4 8 8 C 1.38349 * 120.08266 * 0.02562 * 6 5 4 9 9 C 1.38164 * 120.04000 * 359.97438 * 8 6 5 10 10 C 1.50709 * 120.01993 * 180.02562 * 9 8 6 11 11 H 1.08996 * 109.46988 * 180.02562 * 10 9 8 12 12 C 1.50705 * 109.46664 * 299.99876 * 10 9 8 13 13 H 1.07996 * 119.99924 * 359.97438 * 12 10 9 14 14 C 1.37877 * 119.99871 * 179.97438 * 12 10 9 15 15 N 1.31520 * 119.99957 * 0.02562 * 14 12 10 16 16 Si 1.86791 * 120.00057 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47281 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47217 * 120.00225 * 16 14 12 19 19 H 1.48496 * 109.47485 * 239.99947 * 16 14 12 20 20 C 1.52999 * 109.47052 * 59.99440 * 10 9 8 21 21 C 1.53000 * 117.49747 * 128.74914 * 20 10 9 22 22 C 1.52998 * 117.49751 * 60.09152 * 20 10 9 23 23 H 1.09006 * 109.46827 * 59.99854 * 1 2 3 24 24 H 1.08996 * 109.47681 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47356 * 299.99928 * 1 2 3 26 26 H 1.08002 * 120.02503 * 0.02562 * 4 3 2 27 27 H 1.07999 * 119.97818 * 180.27452 * 5 4 3 28 28 H 1.07998 * 119.97629 * 180.02562 * 8 6 5 29 29 H 0.96998 * 119.99723 * 180.02562 * 15 14 12 30 30 H 1.08999 * 115.55275 * 274.41777 * 20 10 9 31 31 H 1.09006 * 117.49993 * 0.02562 * 21 20 10 32 32 H 1.09000 * 117.50378 * 145.01770 * 21 20 10 33 33 H 1.09003 * 117.50056 * 214.97238 * 22 20 10 34 34 H 1.09002 * 117.50208 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2913 2.3752 0.0005 5 6 1.9203 3.6049 0.0064 6 6 3.3023 3.6763 0.0063 7 17 4.0904 5.2231 0.0131 8 6 4.0566 2.5166 -0.0002 9 6 3.4311 1.2847 -0.0061 10 6 4.2532 0.0216 -0.0126 11 1 3.5902 -0.8434 -0.0171 12 6 5.1222 -0.0056 -1.2436 13 1 5.0828 0.8098 -1.9506 14 6 5.9676 -1.0716 -1.4671 15 7 6.0153 -2.0649 -0.6063 16 14 7.0442 -1.1058 -2.9932 17 1 6.8046 0.1205 -3.7956 18 1 8.4725 -1.1620 -2.5903 19 1 6.7121 -2.3029 -3.8066 20 6 5.1364 -0.0184 1.2361 21 6 5.0943 -1.2868 2.0907 22 6 4.4371 -0.0003 2.5968 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.2127 2.3200 0.0014 27 1 1.3331 4.5114 0.0113 28 1 5.1350 2.5743 0.0002 29 1 6.6104 -2.8146 -0.7634 30 1 6.0909 0.5015 1.1538 31 1 4.4378 -2.0929 1.7631 32 1 6.0210 -1.6012 2.5710 33 1 4.9317 0.5312 3.4099 34 1 3.3479 0.0406 2.6025 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084425233.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:26 Heat of formation + Delta-G solvation = -15.734878 kcal Electronic energy + Delta-G solvation = -18214.031721 eV Core-core repulsion = 15331.114612 eV Total energy + Delta-G solvation = -2882.917109 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.19163 -38.72142 -38.07239 -36.91009 -34.66472 -32.91454 -30.79208 -29.13213 -27.87842 -25.43854 -23.26371 -22.97879 -22.57336 -20.76767 -18.84258 -18.46505 -17.26782 -16.95020 -16.54055 -16.41712 -15.82089 -15.30121 -14.90195 -14.54732 -14.42631 -14.09945 -13.79968 -13.12379 -12.92216 -12.85874 -12.79469 -12.57381 -12.18761 -12.16785 -11.99716 -11.84048 -11.66582 -11.45901 -11.35294 -10.60989 -10.53933 -10.17610 -9.66746 -8.86066 -8.00981 -6.13656 0.39101 0.47104 1.30102 1.40336 1.43738 1.53673 2.46119 2.55305 2.81990 3.25147 3.38597 3.91891 3.97010 4.26486 4.31158 4.37861 4.47069 4.48917 4.54622 4.64109 4.76286 4.79709 4.91355 5.07494 5.15211 5.21769 5.33884 5.37426 5.49831 5.53098 5.64591 5.79288 5.88110 6.08754 6.40166 6.61471 6.93892 7.51807 9.02871 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.014570 B = 0.007891 C = 0.006656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.352980 B = 3547.537383 C = 4205.578319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.335 6.335 3 C 0.109 3.891 4 C -0.191 4.191 5 C -0.086 4.086 6 C -0.076 4.076 7 Cl -0.077 7.077 8 C -0.074 4.074 9 C -0.076 4.076 10 C 0.119 3.881 11 H 0.014 0.986 12 C -0.527 4.527 13 H 0.046 0.954 14 C 0.025 3.975 15 N -0.894 5.894 16 Si 0.943 3.057 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.283 1.283 20 C -0.097 4.097 21 C -0.139 4.139 22 C -0.190 4.190 23 H 0.066 0.934 24 H 0.109 0.891 25 H 0.071 0.929 26 H 0.165 0.835 27 H 0.160 0.840 28 H 0.121 0.879 29 H 0.258 0.742 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.197 8.790 3.332 13.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.249 6.249 3 C 0.064 3.936 4 C -0.209 4.209 5 C -0.104 4.104 6 C -0.103 4.103 7 Cl -0.048 7.048 8 C -0.093 4.093 9 C -0.077 4.077 10 C 0.100 3.900 11 H 0.032 0.968 12 C -0.565 4.565 13 H 0.064 0.936 14 C -0.176 4.176 15 N -0.531 5.531 16 Si 0.769 3.231 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.209 1.209 20 C -0.116 4.116 21 C -0.177 4.177 22 C -0.227 4.227 23 H 0.085 0.915 24 H 0.128 0.872 25 H 0.090 0.910 26 H 0.182 0.818 27 H 0.178 0.822 28 H 0.139 0.861 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.968 8.554 3.366 13.560 hybrid contribution 0.882 -0.274 -0.897 1.287 sum -9.087 8.280 2.470 12.539 Atomic orbital electron populations 1.23346 0.76834 1.05188 1.02404 1.86188 1.23188 1.26958 1.88519 1.19156 0.91850 0.85215 0.97421 1.21366 1.01186 0.90507 1.07888 1.20951 0.91591 0.98733 0.99148 1.20840 0.93426 0.85878 1.10166 1.98314 1.81126 1.28077 1.97319 1.20652 1.00008 0.89901 0.98774 1.19722 0.91280 0.96445 1.00298 1.17106 0.91384 0.89296 0.92165 0.96804 1.21306 1.23135 1.05308 1.06753 0.93578 1.25578 0.98024 0.95411 0.98586 1.70150 1.38055 1.08868 1.36074 0.85746 0.78934 0.77780 0.80616 1.19698 1.20707 1.20899 1.21992 0.98585 1.00515 0.90535 1.22331 1.00679 0.91249 1.03403 1.23010 0.98895 1.02394 0.98447 0.91503 0.87246 0.91043 0.81760 0.82249 0.86148 0.93332 0.91636 0.91541 0.90665 0.88672 0.90343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.49 16 2 O -0.33 -12.32 9.26 -92.66 -0.86 -13.18 16 3 C 0.11 4.06 6.66 22.50 0.15 4.21 16 4 C -0.19 -5.41 9.04 22.36 0.20 -5.21 16 5 C -0.09 -2.36 9.82 22.28 0.22 -2.15 16 6 C -0.08 -2.51 6.32 22.33 0.14 -2.36 16 7 Cl -0.08 -2.22 28.95 -2.72 -0.08 -2.30 16 8 C -0.07 -2.95 8.60 22.28 0.19 -2.76 16 9 C -0.08 -3.30 4.40 -19.77 -0.09 -3.39 16 10 C 0.12 6.00 2.07 -12.28 -0.03 5.98 16 11 H 0.01 0.79 6.75 -2.39 -0.02 0.77 16 12 C -0.53 -29.12 8.22 25.60 0.21 -28.91 16 13 H 0.05 2.58 7.60 -2.91 -0.02 2.55 16 14 C 0.02 1.37 5.30 84.65 0.45 1.82 16 15 N -0.89 -50.56 11.43 21.45 0.25 -50.31 16 16 Si 0.94 44.06 29.54 68.60 2.03 46.09 16 17 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 18 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 19 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 20 C -0.10 -4.63 3.87 -10.79 -0.04 -4.67 16 21 C -0.14 -6.30 9.04 30.62 0.28 -6.02 16 22 C -0.19 -7.62 9.87 30.62 0.30 -7.32 16 23 H 0.07 1.30 7.66 -2.38 -0.02 1.28 16 24 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.07 1.31 7.66 -2.38 -0.02 1.29 16 26 H 0.17 3.33 6.30 -2.91 -0.02 3.31 16 27 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 28 H 0.12 5.05 8.05 -2.91 -0.02 5.02 16 29 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 30 H 0.07 3.28 8.11 -2.39 -0.02 3.26 16 31 H 0.07 3.24 8.05 -2.38 -0.02 3.22 16 32 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 33 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 34 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -62.02 302.65 5.53 -56.49 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 1.09 Total: 12.51 kcal Atomic # 6 Polarization: -52.39 SS G_CDS: 3.10 Total: -49.29 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: 0.25 Total: -50.31 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: -0.86 Total: -13.18 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 17 Polarization: -2.22 SS G_CDS: -0.08 Total: -2.30 kcal Total: -62.02 5.53 -56.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084425233.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.752 kcal (2) G-P(sol) polarization free energy of solvation -62.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds