Wall clock time and date at job start Mon Mar 30 2020 07:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35920 * 117.00277 * 2 1 4 4 C 1.38735 * 120.04298 * 0.02562 * 3 2 1 5 5 C 1.38116 * 119.96067 * 179.97438 * 4 3 2 6 6 C 1.38393 * 120.04270 * 0.02562 * 5 4 3 7 7 Cl 1.73594 * 119.95919 * 179.97438 * 6 5 4 8 8 C 1.38347 * 120.08125 * 359.71783 * 6 5 4 9 9 C 1.38171 * 120.04114 * 0.55633 * 8 6 5 10 10 C 1.50699 * 120.01963 * 179.71968 * 9 8 6 11 11 H 1.09007 * 109.47032 * 179.72822 * 10 9 8 12 12 C 1.50702 * 109.47074 * 59.72638 * 10 9 8 13 13 H 1.07999 * 120.00146 * 275.56383 * 12 10 9 14 14 C 1.37871 * 119.99591 * 95.56854 * 12 10 9 15 15 N 1.31515 * 120.00399 * 6.21358 * 14 12 10 16 16 Si 1.86807 * 119.99844 * 186.21129 * 14 12 10 17 17 H 1.48495 * 109.46963 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46937 * 120.00113 * 16 14 12 19 19 H 1.48493 * 109.47296 * 239.99963 * 16 14 12 20 20 C 1.53002 * 109.47213 * 299.72475 * 10 9 8 21 21 C 1.52997 * 117.49786 * 185.38291 * 20 10 9 22 22 C 1.52997 * 60.02935 * 107.48366 * 21 20 10 23 23 H 1.09001 * 109.46854 * 300.00626 * 1 2 3 24 24 H 1.08998 * 109.46757 * 59.99702 * 1 2 3 25 25 H 1.08995 * 109.47617 * 179.97438 * 1 2 3 26 26 H 1.08009 * 120.02383 * 0.02562 * 4 3 2 27 27 H 1.08002 * 119.98257 * 180.02562 * 5 4 3 28 28 H 1.07996 * 119.97676 * 180.27676 * 8 6 5 29 29 H 0.97003 * 120.00204 * 180.02562 * 15 14 12 30 30 H 1.09004 * 115.54718 * 39.71889 * 20 10 9 31 31 H 1.09006 * 117.50086 * 214.97827 * 21 20 10 32 32 H 1.08999 * 117.50233 * 359.97438 * 21 20 10 33 33 H 1.09004 * 117.50750 * 107.50524 * 22 21 20 34 34 H 1.09006 * 117.49800 * 252.51883 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2915 2.3752 0.0005 5 6 1.9203 3.6048 0.0011 6 6 3.3024 3.6763 0.0005 7 17 4.0905 5.2230 0.0005 8 6 4.0567 2.5165 0.0054 9 6 3.4312 1.2845 -0.0009 10 6 4.2533 0.0215 -0.0020 11 1 3.5902 -0.8437 -0.0023 12 6 5.1232 -0.0127 1.2281 13 1 6.0764 0.4950 1.2297 14 6 4.7022 -0.6922 2.3514 15 7 3.6017 -1.4113 2.3111 16 14 5.6949 -0.5917 3.9307 17 1 6.8807 0.2757 3.7155 18 1 4.8514 -0.0176 5.0097 19 1 6.1411 -1.9528 4.3224 20 6 5.1355 -0.0117 -1.2516 21 6 5.9568 -1.2778 -1.5032 22 6 4.7359 -0.9732 -2.3735 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 0.2128 2.3199 0.0014 27 1 1.3332 4.5113 0.0019 28 1 5.1351 2.5742 0.0095 29 1 3.3053 -1.8891 3.1015 30 1 5.5793 0.9415 -1.5392 31 1 6.9407 -1.1577 -1.9567 32 1 5.8689 -2.0870 -0.7782 33 1 4.9164 -0.6528 -3.3996 34 1 3.8446 -1.5819 -2.2209 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084425234.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:32 Heat of formation + Delta-G solvation = -17.010584 kcal Electronic energy + Delta-G solvation = -18241.353141 eV Core-core repulsion = 15358.380713 eV Total energy + Delta-G solvation = -2882.972427 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.05811 -38.64016 -38.07027 -36.89442 -34.82838 -32.77643 -30.71032 -29.05836 -27.82116 -25.57764 -23.30880 -22.94066 -22.56895 -20.71453 -18.82768 -18.36970 -17.28175 -16.83599 -16.60167 -16.37396 -15.85334 -15.24679 -14.93216 -14.58469 -14.18421 -14.07192 -13.68728 -13.21566 -12.99706 -12.76665 -12.72535 -12.68275 -12.35698 -12.21143 -12.03564 -11.76738 -11.53671 -11.41645 -11.07206 -10.93108 -10.46727 -10.33856 -9.60154 -8.75354 -8.02449 -6.10934 0.46901 0.55307 1.32659 1.38801 1.42352 1.51873 2.44588 2.66517 2.89521 3.21542 3.32644 3.96288 3.98094 4.20275 4.33536 4.36437 4.43187 4.47575 4.50072 4.70048 4.76534 4.82810 4.88125 4.94679 5.18468 5.24666 5.29589 5.37613 5.47720 5.51520 5.68935 5.82922 5.90990 6.08430 6.42889 6.74985 7.02700 7.52191 9.02060 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.012958 B = 0.008328 C = 0.007658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.231571 B = 3361.417076 C = 3655.469249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.320 6.320 3 C 0.112 3.888 4 C -0.201 4.201 5 C -0.093 4.093 6 C -0.079 4.079 7 Cl -0.079 7.079 8 C -0.082 4.082 9 C -0.069 4.069 10 C 0.100 3.900 11 H 0.049 0.951 12 C -0.505 4.505 13 H 0.049 0.951 14 C 0.022 3.978 15 N -0.904 5.904 16 Si 0.936 3.064 17 H -0.267 1.267 18 H -0.287 1.287 19 H -0.282 1.282 20 C -0.138 4.138 21 C -0.169 4.169 22 C -0.180 4.180 23 H 0.055 0.945 24 H 0.071 0.929 25 H 0.105 0.895 26 H 0.157 0.843 27 H 0.155 0.845 28 H 0.124 0.876 29 H 0.257 0.743 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.097 7.066 -6.509 10.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.233 6.233 3 C 0.066 3.934 4 C -0.219 4.219 5 C -0.112 4.112 6 C -0.105 4.105 7 Cl -0.050 7.050 8 C -0.101 4.101 9 C -0.071 4.071 10 C 0.081 3.919 11 H 0.067 0.933 12 C -0.543 4.543 13 H 0.068 0.932 14 C -0.178 4.178 15 N -0.542 5.542 16 Si 0.763 3.237 17 H -0.192 1.192 18 H -0.213 1.213 19 H -0.208 1.208 20 C -0.157 4.157 21 C -0.206 4.206 22 C -0.217 4.217 23 H 0.074 0.926 24 H 0.089 0.911 25 H 0.123 0.877 26 H 0.174 0.826 27 H 0.173 0.827 28 H 0.142 0.858 29 H 0.066 0.934 30 H 0.109 0.891 31 H 0.120 0.880 32 H 0.088 0.912 33 H 0.124 0.876 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.059 6.877 -6.396 10.668 hybrid contribution 0.363 -0.002 1.253 1.305 sum -4.696 6.875 -5.143 9.786 Atomic orbital electron populations 1.23229 0.77755 1.04667 1.01713 1.86269 1.22277 1.26644 1.88133 1.19222 0.92318 0.85036 0.96852 1.21343 1.00932 0.90974 1.08680 1.20866 0.91846 0.98397 1.00094 1.20809 0.93282 0.85881 1.10574 1.98302 1.81058 1.28281 1.97375 1.20639 0.99950 0.89848 0.99619 1.20061 0.91346 0.97063 0.98622 1.17365 0.92376 0.91238 0.90936 0.93280 1.21173 1.03544 1.31876 0.97728 0.93245 1.25591 0.96061 0.94883 1.01247 1.70104 1.24031 1.30884 1.29215 0.85838 0.79262 0.77730 0.80867 1.19157 1.21292 1.20801 1.22429 1.02561 0.93737 0.96924 1.22693 0.95499 1.00009 1.02368 1.22981 0.98596 1.04058 0.96029 0.92617 0.91065 0.87703 0.82565 0.82729 0.85798 0.93432 0.89111 0.87958 0.91215 0.87568 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.81 113.37 1.11 1.71 16 2 O -0.32 -13.38 9.26 -92.65 -0.86 -14.23 16 3 C 0.11 4.61 6.66 22.50 0.15 4.76 16 4 C -0.20 -6.58 9.04 22.36 0.20 -6.38 16 5 C -0.09 -2.90 9.82 22.28 0.22 -2.68 16 6 C -0.08 -2.75 6.32 22.33 0.14 -2.61 16 7 Cl -0.08 -2.36 28.95 -2.72 -0.08 -2.44 16 8 C -0.08 -3.32 8.44 22.28 0.19 -3.14 16 9 C -0.07 -3.13 4.78 -19.77 -0.09 -3.22 16 10 C 0.10 4.89 2.20 -12.29 -0.03 4.86 16 11 H 0.05 2.75 5.87 -2.38 -0.01 2.74 16 12 C -0.51 -27.19 7.70 25.60 0.20 -27.00 16 13 H 0.05 2.66 7.82 -2.91 -0.02 2.64 16 14 C 0.02 1.22 5.45 84.65 0.46 1.68 16 15 N -0.90 -52.16 12.76 21.45 0.27 -51.88 16 16 Si 0.94 44.09 29.54 68.60 2.03 46.12 16 17 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 18 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 19 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 20 C -0.14 -5.80 4.94 -10.77 -0.05 -5.85 16 21 C -0.17 -6.54 10.01 30.59 0.31 -6.23 16 22 C -0.18 -6.56 10.18 30.61 0.31 -6.25 16 23 H 0.06 1.46 7.66 -2.39 -0.02 1.44 16 24 H 0.07 1.61 7.66 -2.39 -0.02 1.59 16 25 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 26 H 0.16 3.97 6.30 -2.91 -0.02 3.96 16 27 H 0.16 3.71 8.06 -2.91 -0.02 3.68 16 28 H 0.12 5.06 7.81 -2.91 -0.02 5.04 16 29 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 30 H 0.09 3.60 7.44 -2.39 -0.02 3.58 16 31 H 0.10 3.36 8.14 -2.38 -0.02 3.34 16 32 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 33 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 34 H 0.07 2.92 8.08 -2.38 -0.02 2.90 16 Total: -1.00 -61.81 304.78 5.58 -56.24 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 1.10 Total: 16.55 kcal Atomic # 6 Polarization: -53.46 SS G_CDS: 3.11 Total: -50.35 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: 0.27 Total: -51.88 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.86 Total: -14.23 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 17 Polarization: -2.36 SS G_CDS: -0.08 Total: -2.44 kcal Total: -61.81 5.58 -56.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084425234.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.227 kcal (2) G-P(sol) polarization free energy of solvation -61.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds