Wall clock time and date at job start Mon Mar 30 2020 08:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99734 * 2 1 4 4 H 1.48499 * 109.47000 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47529 * 300.00035 * 3 2 1 6 6 H 1.48505 * 109.47220 * 60.00103 * 3 2 1 7 7 C 1.37875 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99953 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99916 * 359.97438 * 7 2 1 10 10 N 1.46907 * 109.47213 * 176.10314 * 9 7 2 11 11 C 1.46896 * 110.99698 * 292.90758 * 10 9 7 12 12 C 1.50704 * 109.47014 * 169.99925 * 11 10 9 13 13 C 1.38164 * 119.61556 * 94.99700 * 12 11 10 14 14 C 1.38773 * 119.14954 * 180.02562 * 13 12 11 15 15 Cl 1.73595 * 120.80653 * 179.97438 * 14 13 12 16 16 C 1.38831 * 118.38894 * 359.97438 * 14 13 12 17 17 C 1.38117 * 119.14582 * 0.02562 * 16 14 13 18 18 N 1.31878 * 119.60827 * 274.72931 * 12 11 10 19 19 C 1.46897 * 111.00128 * 168.94953 * 10 9 7 20 20 C 1.53004 * 117.49999 * 4.54696 * 19 10 9 21 21 C 1.52997 * 117.50048 * 295.92325 * 19 10 9 22 22 H 0.97001 * 119.99509 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47599 * 296.10266 * 9 7 2 24 24 H 1.09004 * 109.47532 * 56.10701 * 9 7 2 25 25 H 1.09003 * 109.47275 * 289.99450 * 11 10 9 26 26 H 1.09001 * 109.47778 * 49.99675 * 11 10 9 27 27 H 1.08001 * 120.42483 * 359.97438 * 13 12 11 28 28 H 1.08000 * 120.42464 * 179.97438 * 16 14 13 29 29 H 1.08003 * 119.60597 * 180.02562 * 17 16 14 30 30 H 1.09002 * 115.54597 * 150.25024 * 19 10 9 31 31 H 1.09000 * 117.49639 * 359.97438 * 20 19 10 32 32 H 1.08994 * 117.49756 * 145.01968 * 20 19 10 33 33 H 1.09003 * 117.50063 * 214.98098 * 21 19 10 34 34 H 1.09001 * 117.49901 * 359.97289 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2029 -3.6141 -0.0953 11 6 2.8745 -3.6233 -1.4017 12 6 4.0080 -4.6161 -1.3768 13 6 3.8007 -5.9008 -1.8412 14 6 4.8510 -6.8073 -1.8133 15 17 4.6382 -8.4325 -2.3853 16 6 6.0762 -6.3830 -1.3169 17 6 6.2071 -5.0827 -0.8703 18 7 5.1876 -4.2470 -0.9170 19 6 1.5374 -4.8978 0.1637 20 6 0.0213 -4.8790 0.3684 21 6 0.9511 -5.1207 1.5592 22 1 -0.4849 0.8401 0.0004 23 1 0.6782 -2.5879 0.9225 24 1 0.5728 -2.5271 -0.8533 25 1 2.1606 -3.9063 -2.1753 26 1 3.2669 -2.6291 -1.6156 27 1 2.8334 -6.1959 -2.2202 28 1 6.9157 -7.0614 -1.2797 29 1 7.1570 -4.7446 -0.4831 30 1 1.9661 -5.7607 -0.3459 31 1 -0.4823 -3.9139 0.3113 32 1 -0.5478 -5.7296 -0.0066 33 1 0.9937 -6.1305 1.9676 34 1 1.0595 -4.3150 2.2853 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086129959.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:13:48 Heat of formation + Delta-G solvation = 64.014893 kcal Electronic energy + Delta-G solvation = -17694.264188 eV Core-core repulsion = 14847.098040 eV Total energy + Delta-G solvation = -2847.166148 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.25420 -37.99517 -36.81599 -33.92073 -32.71575 -32.05345 -30.98497 -27.30970 -25.38003 -23.62263 -22.65420 -21.91071 -21.67679 -19.03885 -17.06837 -16.82325 -16.31558 -15.69912 -15.31685 -14.82673 -14.27117 -14.02125 -13.83446 -13.52801 -12.95439 -12.46407 -12.27422 -12.16086 -11.97525 -11.39371 -11.33564 -10.98559 -10.80304 -10.75291 -10.62199 -10.14556 -9.90505 -9.76529 -9.42484 -9.33849 -9.18175 -8.95612 -8.43577 -7.17548 -6.03686 -4.04739 1.06573 1.08540 1.83451 3.32295 3.40099 3.46542 3.73111 4.37964 4.40717 4.45918 4.66903 4.83616 4.90648 5.06868 5.32264 5.40395 5.46963 5.52532 5.61087 5.65798 5.75211 5.89229 6.11779 6.15012 6.16595 6.45078 6.56768 6.64968 6.75881 7.22362 7.27954 7.80457 8.00608 8.11280 8.13885 8.50016 9.04961 9.60090 11.06974 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.023048 B = 0.005281 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.559913 B = 5301.037665 C = 6145.903559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.509 4.509 8 H 0.068 0.932 9 C 0.192 3.808 10 N -0.494 5.494 11 C 0.107 3.893 12 C 0.173 3.827 13 C -0.167 4.167 14 C 0.009 3.991 15 Cl -0.064 7.064 16 C -0.181 4.181 17 C 0.116 3.884 18 N -0.456 5.456 19 C 0.016 3.984 20 C -0.220 4.220 21 C -0.174 4.174 22 H 0.261 0.739 23 H 0.036 0.964 24 H 0.000 1.000 25 H 0.044 0.956 26 H 0.110 0.890 27 H 0.141 0.859 28 H 0.140 0.860 29 H 0.163 0.837 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.163 -14.468 -3.797 17.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.548 4.548 8 H 0.086 0.914 9 C 0.068 3.932 10 N -0.216 5.216 11 C -0.021 4.021 12 C 0.034 3.966 13 C -0.188 4.188 14 C -0.026 4.026 15 Cl -0.035 7.035 16 C -0.201 4.201 17 C -0.042 4.042 18 N -0.165 5.165 19 C -0.094 4.094 20 C -0.259 4.259 21 C -0.212 4.212 22 H 0.070 0.930 23 H 0.054 0.946 24 H 0.018 0.982 25 H 0.062 0.938 26 H 0.128 0.872 27 H 0.159 0.841 28 H 0.158 0.842 29 H 0.180 0.820 30 H 0.119 0.881 31 H 0.128 0.872 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.467 -13.529 -3.204 16.278 hybrid contribution -0.377 -0.388 -0.849 1.007 sum 8.090 -13.916 -4.053 16.599 Atomic orbital electron populations 1.69967 1.06058 1.26711 1.51109 1.24970 0.94829 0.99303 0.95356 0.86457 0.80300 0.83369 0.77451 1.19468 1.21150 1.21069 1.21254 0.93856 0.89723 1.49955 0.91382 1.19873 0.89922 0.86732 0.96702 1.61960 1.31025 1.01444 1.27186 1.20953 0.91021 0.98616 0.91497 1.21580 0.93187 0.91850 0.89954 1.22019 0.99397 0.93909 1.03511 1.21251 0.95506 0.86654 0.99185 1.98377 1.97450 1.20364 1.87352 1.22037 0.96931 0.98603 1.02572 1.22878 0.97961 0.88753 0.94579 1.67630 0.99493 1.36944 1.12432 1.22720 0.92387 0.94613 0.99721 1.23574 0.94701 1.03618 1.04021 1.22954 1.04352 1.01705 0.92171 0.92985 0.94564 0.98180 0.93783 0.87160 0.84087 0.84192 0.82029 0.88065 0.87176 0.90037 0.89722 0.88459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.19 13.29 55.43 0.74 -25.46 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.55 29.54 -169.99 -5.02 16.52 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.51 -14.04 8.30 -34.44 -0.29 -14.33 16 8 H 0.07 1.90 7.40 -52.49 -0.39 1.51 16 9 C 0.19 4.82 3.35 -4.98 -0.02 4.81 16 10 N -0.49 -10.51 4.68 -229.52 -1.07 -11.58 16 11 C 0.11 2.05 5.14 -4.98 -0.03 2.03 16 12 C 0.17 2.88 5.82 -82.60 -0.48 2.40 16 13 C -0.17 -2.34 7.95 -39.41 -0.31 -2.65 16 14 C 0.01 0.11 6.37 -39.16 -0.25 -0.14 16 15 Cl -0.06 -0.70 29.02 -51.86 -1.50 -2.20 16 16 C -0.18 -2.06 9.94 -39.41 -0.39 -2.45 16 17 C 0.12 1.50 11.18 -17.56 -0.20 1.30 16 18 N -0.46 -7.70 10.27 -9.49 -0.10 -7.79 16 19 C 0.02 0.29 5.79 -67.71 -0.39 -0.11 16 20 C -0.22 -3.87 9.50 -26.73 -0.25 -4.12 16 21 C -0.17 -3.00 10.00 -26.73 -0.27 -3.27 16 22 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 23 H 0.04 0.98 6.16 -51.93 -0.32 0.66 16 24 H 0.00 0.01 7.79 -51.93 -0.40 -0.39 16 25 H 0.04 0.78 8.02 -51.93 -0.42 0.37 16 26 H 0.11 2.35 6.80 -51.93 -0.35 1.99 16 27 H 0.14 1.78 7.67 -52.49 -0.40 1.38 16 28 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 29 H 0.16 1.57 8.06 -52.48 -0.42 1.15 16 30 H 0.10 1.65 5.60 -51.93 -0.29 1.36 16 31 H 0.11 2.24 5.89 -51.93 -0.31 1.93 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.10 1.85 7.78 -51.93 -0.40 1.45 16 LS Contribution 300.74 15.07 4.53 4.53 Total: -1.00 -29.66 300.74 -9.51 -39.18 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -4.11 Total: 1.84 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -2.97 Total: -15.04 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: -0.44 Total: -44.83 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.50 Total: -2.20 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.66 -9.51 -39.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086129959.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.190 kcal (2) G-P(sol) polarization free energy of solvation -29.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds