Wall clock time and date at job start Mon Mar 30 2020 08:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99734 * 2 1 4 4 H 1.48499 * 109.47000 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47529 * 300.00035 * 3 2 1 6 6 H 1.48505 * 109.47220 * 60.00103 * 3 2 1 7 7 C 1.37875 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99953 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99916 * 359.97438 * 7 2 1 10 10 N 1.46907 * 109.47213 * 176.10314 * 9 7 2 11 11 C 1.46896 * 110.99698 * 292.90758 * 10 9 7 12 12 C 1.50704 * 109.47014 * 169.99925 * 11 10 9 13 13 C 1.38164 * 119.61556 * 94.99700 * 12 11 10 14 14 C 1.38773 * 119.14954 * 180.02562 * 13 12 11 15 15 Cl 1.73595 * 120.80653 * 179.97438 * 14 13 12 16 16 C 1.38831 * 118.38894 * 359.97438 * 14 13 12 17 17 C 1.38117 * 119.14582 * 0.02562 * 16 14 13 18 18 N 1.31878 * 119.60827 * 274.72931 * 12 11 10 19 19 C 1.46897 * 111.00128 * 168.94953 * 10 9 7 20 20 C 1.53004 * 117.49999 * 4.54696 * 19 10 9 21 21 C 1.52997 * 117.50048 * 295.92325 * 19 10 9 22 22 H 0.97001 * 119.99509 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47599 * 296.10266 * 9 7 2 24 24 H 1.09004 * 109.47532 * 56.10701 * 9 7 2 25 25 H 1.09003 * 109.47275 * 289.99450 * 11 10 9 26 26 H 1.09001 * 109.47778 * 49.99675 * 11 10 9 27 27 H 1.08001 * 120.42483 * 359.97438 * 13 12 11 28 28 H 1.08000 * 120.42464 * 179.97438 * 16 14 13 29 29 H 1.08003 * 119.60597 * 180.02562 * 17 16 14 30 30 H 1.09002 * 115.54597 * 150.25024 * 19 10 9 31 31 H 1.09000 * 117.49639 * 359.97438 * 20 19 10 32 32 H 1.08994 * 117.49756 * 145.01968 * 20 19 10 33 33 H 1.09003 * 117.50063 * 214.98098 * 21 19 10 34 34 H 1.09001 * 117.49901 * 359.97289 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2029 -3.6141 -0.0953 11 6 2.8745 -3.6233 -1.4017 12 6 4.0080 -4.6161 -1.3768 13 6 3.8007 -5.9008 -1.8412 14 6 4.8510 -6.8073 -1.8133 15 17 4.6382 -8.4325 -2.3853 16 6 6.0762 -6.3830 -1.3169 17 6 6.2071 -5.0827 -0.8703 18 7 5.1876 -4.2470 -0.9170 19 6 1.5374 -4.8978 0.1637 20 6 0.0213 -4.8790 0.3684 21 6 0.9511 -5.1207 1.5592 22 1 -0.4849 0.8401 0.0004 23 1 0.6782 -2.5879 0.9225 24 1 0.5728 -2.5271 -0.8533 25 1 2.1606 -3.9063 -2.1753 26 1 3.2669 -2.6291 -1.6156 27 1 2.8334 -6.1959 -2.2202 28 1 6.9157 -7.0614 -1.2797 29 1 7.1570 -4.7446 -0.4831 30 1 1.9661 -5.7607 -0.3459 31 1 -0.4823 -3.9139 0.3113 32 1 -0.5478 -5.7296 -0.0066 33 1 0.9937 -6.1305 1.9676 34 1 1.0595 -4.3150 2.2853 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086129959.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:13:48 Heat of formation + Delta-G solvation = 45.606420 kcal Electronic energy + Delta-G solvation = -17695.062439 eV Core-core repulsion = 14847.098040 eV Total energy + Delta-G solvation = -2847.964399 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.37800 -39.51150 -37.74050 -35.53016 -34.57301 -33.11294 -32.41396 -29.13440 -26.95599 -24.77925 -24.39991 -23.14215 -23.11179 -20.62675 -18.78216 -18.02122 -17.54755 -17.14919 -16.82912 -16.33788 -16.01024 -15.22714 -15.07280 -14.71837 -14.47436 -14.05683 -13.76561 -13.50181 -13.20674 -13.05504 -12.87873 -12.64313 -12.51138 -12.35658 -12.02336 -11.86485 -11.68372 -11.18824 -11.11355 -10.60720 -10.46937 -10.43478 -10.08998 -8.85208 -8.19793 -6.28854 0.00968 0.07178 0.88940 1.40315 1.41506 1.55566 2.40494 2.59923 2.97859 3.12821 3.26329 3.38199 3.69745 3.86164 4.02352 4.05768 4.09444 4.19457 4.40980 4.44898 4.68048 4.70044 4.76143 4.78733 4.91368 4.97559 5.08345 5.19001 5.31158 5.31893 5.56197 5.67427 6.06638 6.26613 6.61237 6.87663 7.05746 7.40676 8.90838 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.023048 B = 0.005281 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.559913 B = 5301.037665 C = 6145.903559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.524 4.524 8 H 0.058 0.942 9 C 0.214 3.786 10 N -0.507 5.507 11 C 0.113 3.887 12 C 0.152 3.848 13 C -0.165 4.165 14 C 0.006 3.994 15 Cl -0.045 7.045 16 C -0.161 4.161 17 C 0.111 3.889 18 N -0.497 5.497 19 C 0.007 3.993 20 C -0.216 4.216 21 C -0.166 4.166 22 H 0.264 0.736 23 H 0.011 0.989 24 H -0.026 1.026 25 H 0.050 0.950 26 H 0.077 0.923 27 H 0.151 0.849 28 H 0.176 0.824 29 H 0.192 0.808 30 H 0.128 0.872 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.912 -16.461 -4.027 19.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.562 4.562 8 H 0.076 0.924 9 C 0.089 3.911 10 N -0.229 5.229 11 C -0.015 4.015 12 C 0.014 3.986 13 C -0.186 4.186 14 C -0.029 4.029 15 Cl -0.016 7.016 16 C -0.181 4.181 17 C -0.047 4.047 18 N -0.207 5.207 19 C -0.103 4.103 20 C -0.255 4.255 21 C -0.204 4.204 22 H 0.073 0.927 23 H 0.029 0.971 24 H -0.008 1.008 25 H 0.068 0.932 26 H 0.096 0.904 27 H 0.169 0.831 28 H 0.194 0.806 29 H 0.209 0.791 30 H 0.145 0.855 31 H 0.092 0.908 32 H 0.133 0.867 33 H 0.139 0.861 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.219 -15.540 -3.438 18.914 hybrid contribution -0.857 0.113 -0.795 1.175 sum 9.362 -15.427 -4.233 18.536 Atomic orbital electron populations 1.70080 1.07504 1.27750 1.51867 1.25806 0.95669 1.02825 0.94828 0.85415 0.78969 0.78978 0.77775 1.19122 1.20239 1.20413 1.21500 0.93536 0.91237 1.49915 0.92359 1.19407 0.89709 0.87825 0.94188 1.61815 1.30332 1.01843 1.28897 1.20769 0.92099 0.98139 0.90533 1.21057 0.92575 0.92313 0.92638 1.21972 1.00504 0.93041 1.03132 1.21344 0.95421 0.87314 0.98827 1.98390 1.97431 1.18668 1.87065 1.22411 0.97460 0.98319 0.99960 1.23390 0.97955 0.89093 0.94233 1.67504 1.00444 1.39033 1.13734 1.22883 0.92740 0.93801 1.00847 1.23489 0.94380 1.03087 1.04553 1.23009 1.03431 1.02726 0.91265 0.92704 0.97071 1.00850 0.93189 0.90444 0.83087 0.80620 0.79125 0.85484 0.90778 0.86723 0.86101 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.03 13.29 21.45 0.28 -55.75 16 2 C 0.01 0.40 5.46 84.65 0.46 0.86 16 3 Si 0.96 45.13 29.54 68.60 2.03 47.15 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.52 -30.16 8.30 25.60 0.21 -29.95 16 8 H 0.06 3.40 7.40 -2.91 -0.02 3.38 16 9 C 0.21 11.40 3.35 85.55 0.29 11.69 16 10 N -0.51 -22.35 4.68 -880.06 -4.12 -26.47 16 11 C 0.11 4.49 5.14 85.56 0.44 4.92 16 12 C 0.15 5.03 5.82 42.54 0.25 5.28 16 13 C -0.17 -4.34 7.95 22.38 0.18 -4.16 16 14 C 0.01 0.13 6.37 22.54 0.14 0.27 16 15 Cl -0.04 -0.82 29.02 -2.72 -0.08 -0.89 16 16 C -0.16 -3.09 9.94 22.38 0.22 -2.87 16 17 C 0.11 2.60 11.18 84.65 0.95 3.54 16 18 N -0.50 -16.54 10.27 -183.95 -1.89 -18.43 16 19 C 0.01 0.24 5.79 44.92 0.26 0.50 16 20 C -0.22 -7.59 9.50 30.60 0.29 -7.30 16 21 C -0.17 -5.65 10.00 30.59 0.31 -5.34 16 22 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 23 H 0.01 0.65 6.16 -2.39 -0.01 0.63 16 24 H -0.03 -1.50 7.79 -2.38 -0.02 -1.52 16 25 H 0.05 1.86 8.02 -2.39 -0.02 1.84 16 26 H 0.08 3.52 6.80 -2.39 -0.02 3.50 16 27 H 0.15 3.53 7.67 -2.91 -0.02 3.51 16 28 H 0.18 2.10 8.06 -2.91 -0.02 2.07 16 29 H 0.19 3.13 8.06 -2.91 -0.02 3.11 16 30 H 0.13 3.92 5.60 -2.39 -0.01 3.90 16 31 H 0.07 3.17 5.89 -2.39 -0.01 3.16 16 32 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 33 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 34 H 0.07 2.80 7.78 -2.39 -0.02 2.78 16 Total: -1.00 -66.69 300.74 1.32 -65.37 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 1.11 Total: 11.57 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: 4.00 Total: -22.55 kcal Atomic # 7 Polarization: -94.92 SS G_CDS: -5.72 Total: -100.64 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -0.08 Total: -0.89 kcal Total: -66.69 1.32 -65.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086129959.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.975 kcal (2) G-P(sol) polarization free energy of solvation -66.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds