Wall clock time and date at job start Mon Mar 30 2020 08:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99713 * 2 1 4 4 H 1.48500 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47206 * 299.99848 * 3 2 1 6 6 H 1.48498 * 109.47596 * 59.99841 * 3 2 1 7 7 C 1.37875 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99664 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99947 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.46984 * 179.97438 * 9 7 2 11 11 C 1.39008 * 120.00041 * 90.00095 * 10 9 7 12 12 C 1.39136 * 119.70673 * 88.84598 * 11 10 9 13 13 C 1.38294 * 119.09725 * 180.26008 * 12 11 10 14 14 C 1.38885 * 118.50544 * 359.48012 * 13 12 11 15 15 C 1.50697 * 120.33851 * 180.24823 * 14 13 12 16 16 Cl 1.80310 * 109.47198 * 90.25343 * 15 14 13 17 17 C 1.38017 * 119.32882 * 0.49956 * 14 13 12 18 18 N 1.31974 * 120.85700 * 359.76553 * 17 14 13 19 19 C 1.46501 * 120.00198 * 269.99759 * 10 9 7 20 20 C 1.53009 * 117.49724 * 183.34917 * 19 10 9 21 21 C 1.53003 * 117.49584 * 114.72795 * 19 10 9 22 22 H 0.96995 * 120.00300 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47499 * 59.99941 * 9 7 2 24 24 H 1.09004 * 109.47045 * 299.99764 * 9 7 2 25 25 H 1.07998 * 120.45248 * 359.97438 * 12 11 10 26 26 H 1.08001 * 120.74871 * 179.72231 * 13 12 11 27 27 H 1.09002 * 109.47418 * 210.25512 * 15 14 13 28 28 H 1.09001 * 109.47309 * 330.25839 * 15 14 13 29 29 H 1.08005 * 119.57632 * 179.74789 * 17 14 13 30 30 H 1.08993 * 115.55043 * 329.05710 * 19 10 9 31 31 H 1.09000 * 117.49520 * 359.97438 * 20 19 10 32 32 H 1.08994 * 117.49677 * 145.02227 * 20 19 10 33 33 H 1.09000 * 117.49582 * 214.98214 * 21 19 10 34 34 H 1.09000 * 117.49727 * 0.02562 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8904 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0017 10 7 2.2032 -3.6126 0.0015 11 6 2.6558 -4.1403 1.2052 12 6 1.9482 -5.1713 1.8155 13 6 2.4068 -5.6832 3.0155 14 6 3.5682 -5.1526 3.5619 15 6 4.1079 -5.6833 4.8650 16 17 5.2525 -7.0368 4.5347 17 6 4.2201 -4.1306 2.9021 18 7 3.7565 -3.6577 1.7605 19 6 2.6782 -4.1699 -1.2674 20 6 3.6101 -5.3818 -1.2018 21 6 4.1639 -4.0111 -1.5965 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5575 -0.8880 24 1 0.6248 -2.5563 0.8920 25 1 1.0506 -5.5632 1.3606 26 1 1.8760 -6.4805 3.5146 27 1 4.6307 -4.8861 5.3934 28 1 3.2835 -6.0464 5.4788 29 1 5.1214 -3.7122 3.3255 30 1 1.9713 -4.1224 -2.0957 31 1 3.8700 -5.7639 -0.2147 32 1 3.5162 -6.1318 -1.9871 33 1 4.4345 -3.8595 -2.6415 34 1 4.7879 -3.4923 -0.8688 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087718677.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:03:20 Heat of formation + Delta-G solvation = 64.859082 kcal Electronic energy + Delta-G solvation = -17747.469279 eV Core-core repulsion = 14900.339738 eV Total energy + Delta-G solvation = -2847.129541 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.01995 -37.27769 -36.03207 -33.89675 -32.83196 -32.05100 -30.73768 -27.28179 -25.64501 -23.30074 -22.50050 -22.08461 -21.74781 -19.87324 -16.65153 -16.36029 -16.06689 -15.61799 -15.28047 -14.56324 -14.33649 -14.23685 -13.66140 -13.39339 -12.94773 -12.57431 -12.39256 -12.18673 -11.97811 -11.16192 -11.02251 -10.97371 -10.67092 -10.61143 -10.50372 -10.40141 -10.12160 -9.71796 -9.50465 -9.37772 -9.00093 -8.47101 -8.36945 -6.93233 -5.94409 -4.00196 1.14048 1.61366 2.44541 3.33031 3.40656 3.47682 3.94453 4.16778 4.44914 4.51126 4.57205 4.69614 4.95423 5.12601 5.21579 5.32794 5.37863 5.45314 5.56101 5.62766 5.73788 6.01349 6.02778 6.29962 6.31828 6.38171 6.49963 6.73489 6.79677 7.21486 7.38719 7.97338 8.29858 8.37614 8.45091 8.72419 9.12305 9.65756 11.09759 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.020840 B = 0.005447 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.217979 B = 5138.893469 C = 5703.992079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.517 4.517 8 H 0.065 0.935 9 C 0.277 3.723 10 N -0.636 5.636 11 C 0.423 3.577 12 C -0.177 4.177 13 C -0.054 4.054 14 C -0.191 4.191 15 C 0.024 3.976 16 Cl -0.188 7.188 17 C 0.131 3.869 18 N -0.484 5.484 19 C 0.139 3.861 20 C -0.206 4.206 21 C -0.204 4.204 22 H 0.260 0.740 23 H 0.031 0.969 24 H 0.020 0.980 25 H 0.134 0.866 26 H 0.130 0.870 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.147 0.853 30 H 0.117 0.883 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.723 -13.037 6.373 15.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.557 4.557 8 H 0.083 0.917 9 C 0.158 3.842 10 N -0.361 5.361 11 C 0.196 3.804 12 C -0.200 4.200 13 C -0.080 4.080 14 C -0.193 4.193 15 C -0.039 4.039 16 Cl -0.161 7.161 17 C -0.028 4.028 18 N -0.195 5.195 19 C 0.032 3.968 20 C -0.244 4.244 21 C -0.245 4.245 22 H 0.070 0.930 23 H 0.049 0.951 24 H 0.038 0.962 25 H 0.152 0.848 26 H 0.147 0.853 27 H 0.120 0.880 28 H 0.118 0.882 29 H 0.165 0.835 30 H 0.135 0.865 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.034 -12.284 5.903 14.905 hybrid contribution 0.147 0.398 0.490 0.648 sum 6.181 -11.886 6.393 14.845 Atomic orbital electron populations 1.69943 1.05953 1.26627 1.51834 1.24973 0.94793 0.99118 0.95600 0.86522 0.80318 0.83717 0.77372 1.19723 1.21134 1.21230 1.21842 0.94112 0.90781 1.48940 0.91694 1.18986 0.86140 0.81947 0.97082 1.45821 1.51734 1.40625 0.97961 1.18230 0.87352 0.87378 0.87448 1.22425 1.02235 0.98786 0.96524 1.21275 0.94452 0.97776 0.94526 1.20558 0.98590 1.01288 0.98876 1.23003 0.94605 0.90766 0.95508 1.98731 1.66772 1.53870 1.96771 1.22468 0.97822 0.92033 0.90495 1.67901 1.14417 1.27072 1.10075 1.21139 0.90705 0.96504 0.88425 1.23211 1.07027 0.92029 1.02130 1.23436 1.00902 0.98632 1.01483 0.93046 0.95134 0.96177 0.84783 0.85252 0.88017 0.88234 0.83542 0.86544 0.89937 0.89107 0.89554 0.88494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 4 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.52 -14.58 9.39 -34.44 -0.32 -14.91 16 8 H 0.06 1.91 7.81 -52.49 -0.41 1.50 16 9 C 0.28 7.07 5.48 -5.20 -0.03 7.04 16 10 N -0.64 -13.59 2.79 -167.61 -0.47 -14.06 16 11 C 0.42 8.32 4.46 -155.02 -0.69 7.63 16 12 C -0.18 -2.88 10.01 -39.23 -0.39 -3.27 16 13 C -0.05 -0.72 9.85 -39.32 -0.39 -1.11 16 14 C -0.19 -2.48 5.28 -104.47 -0.55 -3.04 16 15 C 0.02 0.23 6.80 36.00 0.25 0.48 16 16 Cl -0.19 -2.08 29.13 -51.86 -1.51 -3.59 16 17 C 0.13 2.06 10.85 -17.57 -0.19 1.87 16 18 N -0.48 -9.58 10.40 -12.44 -0.13 -9.71 16 19 C 0.14 2.58 6.57 -67.92 -0.45 2.13 16 20 C -0.21 -3.27 9.83 -26.72 -0.26 -3.53 16 21 C -0.20 -3.60 10.36 -26.73 -0.28 -3.88 16 22 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 23 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 24 H 0.02 0.55 8.05 -51.93 -0.42 0.13 16 25 H 0.13 2.02 8.06 -52.49 -0.42 1.60 16 26 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 27 H 0.10 0.81 8.09 -51.93 -0.42 0.39 16 28 H 0.10 0.76 8.09 -51.93 -0.42 0.34 16 29 H 0.15 1.93 8.06 -52.48 -0.42 1.51 16 30 H 0.12 2.02 8.14 -51.93 -0.42 1.60 16 31 H 0.08 1.40 7.05 -51.93 -0.37 1.03 16 32 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.10 1.94 8.14 -51.93 -0.42 1.52 16 LS Contribution 313.00 15.07 4.72 4.72 Total: -1.00 -30.86 313.00 -9.63 -40.49 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -4.55 Total: 0.02 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -3.40 Total: -9.10 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.14 Total: -49.62 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 17 Polarization: -2.08 SS G_CDS: -1.51 Total: -3.59 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.86 -9.63 -40.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087718677.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.345 kcal (2) G-P(sol) polarization free energy of solvation -30.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds