Wall clock time and date at job start Mon Mar 30 2020 08:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99713 * 2 1 4 4 H 1.48500 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47206 * 299.99848 * 3 2 1 6 6 H 1.48498 * 109.47596 * 59.99841 * 3 2 1 7 7 C 1.37875 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99664 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99947 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.46984 * 179.97438 * 9 7 2 11 11 C 1.39008 * 120.00041 * 90.00095 * 10 9 7 12 12 C 1.39136 * 119.70673 * 88.84598 * 11 10 9 13 13 C 1.38294 * 119.09725 * 180.26008 * 12 11 10 14 14 C 1.38885 * 118.50544 * 359.48012 * 13 12 11 15 15 C 1.50697 * 120.33851 * 180.24823 * 14 13 12 16 16 Cl 1.80310 * 109.47198 * 90.25343 * 15 14 13 17 17 C 1.38017 * 119.32882 * 0.49956 * 14 13 12 18 18 N 1.31974 * 120.85700 * 359.76553 * 17 14 13 19 19 C 1.46501 * 120.00198 * 269.99759 * 10 9 7 20 20 C 1.53009 * 117.49724 * 183.34917 * 19 10 9 21 21 C 1.53003 * 117.49584 * 114.72795 * 19 10 9 22 22 H 0.96995 * 120.00300 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47499 * 59.99941 * 9 7 2 24 24 H 1.09004 * 109.47045 * 299.99764 * 9 7 2 25 25 H 1.07998 * 120.45248 * 359.97438 * 12 11 10 26 26 H 1.08001 * 120.74871 * 179.72231 * 13 12 11 27 27 H 1.09002 * 109.47418 * 210.25512 * 15 14 13 28 28 H 1.09001 * 109.47309 * 330.25839 * 15 14 13 29 29 H 1.08005 * 119.57632 * 179.74789 * 17 14 13 30 30 H 1.08993 * 115.55043 * 329.05710 * 19 10 9 31 31 H 1.09000 * 117.49520 * 359.97438 * 20 19 10 32 32 H 1.08994 * 117.49677 * 145.02227 * 20 19 10 33 33 H 1.09000 * 117.49582 * 214.98214 * 21 19 10 34 34 H 1.09000 * 117.49727 * 0.02562 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8904 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0017 10 7 2.2032 -3.6126 0.0015 11 6 2.6558 -4.1403 1.2052 12 6 1.9482 -5.1713 1.8155 13 6 2.4068 -5.6832 3.0155 14 6 3.5682 -5.1526 3.5619 15 6 4.1079 -5.6833 4.8650 16 17 5.2525 -7.0368 4.5347 17 6 4.2201 -4.1306 2.9021 18 7 3.7565 -3.6577 1.7605 19 6 2.6782 -4.1699 -1.2674 20 6 3.6101 -5.3818 -1.2018 21 6 4.1639 -4.0111 -1.5965 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5575 -0.8880 24 1 0.6248 -2.5563 0.8920 25 1 1.0506 -5.5632 1.3606 26 1 1.8760 -6.4805 3.5146 27 1 4.6307 -4.8861 5.3934 28 1 3.2835 -6.0464 5.4788 29 1 5.1214 -3.7122 3.3255 30 1 1.9713 -4.1224 -2.0957 31 1 3.8700 -5.7639 -0.2147 32 1 3.5162 -6.1318 -1.9871 33 1 4.4345 -3.8595 -2.6415 34 1 4.7879 -3.4923 -0.8688 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087718677.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:03:19 Heat of formation + Delta-G solvation = 47.845625 kcal Electronic energy + Delta-G solvation = -17748.207038 eV Core-core repulsion = 14900.339738 eV Total energy + Delta-G solvation = -2847.867300 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.28837 -38.66505 -36.90762 -35.59544 -34.42203 -33.51644 -32.11516 -28.97249 -27.04288 -24.58158 -24.34447 -23.37264 -23.10917 -21.25125 -18.57716 -17.73960 -17.51297 -17.27456 -16.46337 -16.18488 -15.60759 -15.43105 -14.82216 -14.54250 -14.37260 -14.02480 -13.89570 -13.69318 -13.38415 -12.97577 -12.88017 -12.50576 -12.36965 -12.15185 -12.07915 -11.53268 -11.32764 -11.31748 -11.17017 -10.71935 -10.58832 -10.32227 -9.69243 -8.63763 -8.03402 -6.26480 -0.02104 0.43337 1.35539 1.36997 1.50296 1.56934 2.36971 2.52651 2.93431 3.07629 3.13396 3.58387 3.74902 3.88104 4.02041 4.07546 4.11850 4.26616 4.35068 4.52389 4.61348 4.74720 4.86075 4.92475 5.06379 5.11636 5.18463 5.21495 5.28717 5.33866 5.65549 5.76531 6.21590 6.57280 6.93574 6.98090 7.33930 7.46198 8.90469 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.020840 B = 0.005447 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.217979 B = 5138.893469 C = 5703.992079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.009 3.991 3 Si 0.955 3.045 4 H -0.276 1.276 5 H -0.274 1.274 6 H -0.279 1.279 7 C -0.527 4.527 8 H 0.045 0.955 9 C 0.296 3.704 10 N -0.643 5.643 11 C 0.385 3.615 12 C -0.183 4.183 13 C -0.045 4.045 14 C -0.173 4.173 15 C 0.028 3.972 16 Cl -0.196 7.196 17 C 0.115 3.885 18 N -0.528 5.528 19 C 0.110 3.890 20 C -0.169 4.169 21 C -0.210 4.210 22 H 0.264 0.736 23 H 0.014 0.986 24 H -0.006 1.006 25 H 0.140 0.860 26 H 0.170 0.830 27 H 0.121 0.879 28 H 0.129 0.871 29 H 0.165 0.835 30 H 0.122 0.878 31 H 0.072 0.928 32 H 0.125 0.875 33 H 0.106 0.894 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.404 -14.287 7.562 17.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.189 4.189 3 Si 0.781 3.219 4 H -0.201 1.201 5 H -0.200 1.200 6 H -0.204 1.204 7 C -0.566 4.566 8 H 0.064 0.936 9 C 0.175 3.825 10 N -0.368 5.368 11 C 0.159 3.841 12 C -0.206 4.206 13 C -0.071 4.071 14 C -0.175 4.175 15 C -0.034 4.034 16 Cl -0.170 7.170 17 C -0.044 4.044 18 N -0.239 5.239 19 C 0.005 3.995 20 C -0.206 4.206 21 C -0.250 4.250 22 H 0.073 0.927 23 H 0.032 0.968 24 H 0.012 0.988 25 H 0.158 0.842 26 H 0.187 0.813 27 H 0.140 0.860 28 H 0.147 0.853 29 H 0.182 0.818 30 H 0.140 0.860 31 H 0.091 0.909 32 H 0.143 0.857 33 H 0.124 0.876 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.733 -13.562 7.095 16.721 hybrid contribution -0.019 0.727 0.205 0.755 sum 6.715 -12.835 7.300 16.221 Atomic orbital electron populations 1.70034 1.07142 1.27639 1.52403 1.25722 0.95640 1.02335 0.95199 0.85549 0.78670 0.79786 0.77873 1.20099 1.19989 1.20448 1.21986 0.93221 0.92437 1.48983 0.93638 1.18446 0.86418 0.82826 0.94833 1.45576 1.51548 1.39831 0.99853 1.18410 0.88666 0.89374 0.87610 1.22492 1.02200 0.98279 0.97622 1.21708 0.94329 0.97837 0.93216 1.20867 0.97660 0.99458 0.99505 1.23182 0.95508 0.91059 0.93667 1.98739 1.67160 1.54250 1.96838 1.22871 0.98724 0.93036 0.89819 1.67731 1.15298 1.28809 1.12112 1.21383 0.91267 0.98928 0.87962 1.23166 1.03599 0.91409 1.02475 1.23367 0.99720 1.00109 1.01774 0.92688 0.96787 0.98823 0.84175 0.81297 0.86049 0.85327 0.81826 0.86003 0.90915 0.85735 0.87571 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.84 13.29 21.45 0.28 -55.55 16 2 C 0.01 0.52 5.46 84.65 0.46 0.98 16 3 Si 0.96 46.04 29.54 68.60 2.03 48.07 16 4 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 5 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 7 C -0.53 -30.81 9.39 25.60 0.24 -30.57 16 8 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 9 C 0.30 15.82 5.48 85.63 0.47 16.29 16 10 N -0.64 -28.54 2.79 -684.20 -1.91 -30.45 16 11 C 0.39 15.48 4.46 133.06 0.59 16.08 16 12 C -0.18 -5.87 10.01 22.50 0.23 -5.65 16 13 C -0.04 -1.08 9.85 22.44 0.22 -0.86 16 14 C -0.17 -4.08 5.28 -19.76 -0.10 -4.18 16 15 C 0.03 0.44 6.80 71.23 0.48 0.92 16 16 Cl -0.20 -3.77 29.13 -2.72 -0.08 -3.85 16 17 C 0.11 3.50 10.85 84.62 0.92 4.42 16 18 N -0.53 -21.36 10.40 -193.26 -2.01 -23.37 16 19 C 0.11 4.18 6.57 45.00 0.30 4.47 16 20 C -0.17 -5.19 9.83 30.60 0.30 -4.88 16 21 C -0.21 -7.46 10.36 30.60 0.32 -7.14 16 22 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 23 H 0.01 0.78 8.07 -2.39 -0.02 0.77 16 24 H -0.01 -0.36 8.05 -2.38 -0.02 -0.38 16 25 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 26 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 27 H 0.12 1.46 8.09 -2.39 -0.02 1.44 16 28 H 0.13 1.33 8.09 -2.39 -0.02 1.31 16 29 H 0.16 4.17 8.06 -2.91 -0.02 4.15 16 30 H 0.12 4.33 8.14 -2.39 -0.02 4.31 16 31 H 0.07 2.41 7.05 -2.39 -0.02 2.40 16 32 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 33 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 34 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 Total: -1.00 -69.33 313.00 3.82 -65.51 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 1.09 Total: 9.77 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: 4.42 Total: -10.12 kcal Atomic # 7 Polarization: -105.74 SS G_CDS: -3.63 Total: -109.37 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Atomic # 17 Polarization: -3.77 SS G_CDS: -0.08 Total: -3.85 kcal Total: -69.33 3.82 -65.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087718677.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.354 kcal (2) G-P(sol) polarization free energy of solvation -69.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds