Wall clock time and date at job start Mon Mar 30 2020 06:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00199 * 2 1 4 4 H 1.48506 * 109.47234 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47251 * 300.00138 * 3 2 1 6 6 H 1.48500 * 109.46998 * 60.00030 * 3 2 1 7 7 C 1.37885 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99972 * 173.70038 * 7 2 1 9 9 C 1.50697 * 119.99930 * 353.70316 * 7 2 1 10 10 C 1.52998 * 115.55023 * 86.11059 * 9 7 2 11 11 O 1.42904 * 109.47123 * 65.11243 * 10 9 7 12 12 C 1.42896 * 114.00132 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47198 * 179.97438 * 12 11 10 14 14 C 1.38264 * 119.99671 * 269.72466 * 13 12 11 15 15 C 1.38217 * 120.03107 * 179.76915 * 14 13 12 16 16 C 1.38242 * 120.00775 * 0.50586 * 15 14 13 17 17 C 1.38327 * 119.98573 * 359.74580 * 16 15 14 18 18 Cl 1.73604 * 120.00810 * 180.02562 * 17 16 15 19 19 C 1.38190 * 119.99349 * 89.99828 * 13 12 11 20 20 C 1.53003 * 117.49843 * 231.78180 * 9 7 2 21 21 C 1.53001 * 117.49952 * 300.44118 * 9 7 2 22 22 H 0.96994 * 119.99813 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47356 * 305.10966 * 10 9 7 24 24 H 1.09001 * 109.47188 * 185.10799 * 10 9 7 25 25 H 1.09003 * 109.47299 * 299.99880 * 12 11 10 26 26 H 1.09000 * 109.47329 * 59.99487 * 12 11 10 27 27 H 1.08003 * 119.98373 * 359.97438 * 14 13 12 28 28 H 1.07991 * 119.99533 * 180.25498 * 15 14 13 29 29 H 1.08003 * 119.99918 * 179.77417 * 16 15 14 30 30 H 1.08003 * 120.00871 * 359.95798 * 19 13 12 31 31 H 1.08994 * 117.49914 * 215.00155 * 20 9 7 32 32 H 1.08997 * 117.49702 * 0.02562 * 20 9 7 33 33 H 1.09001 * 117.49614 * 359.97438 * 21 9 7 34 34 H 1.09000 * 117.50022 * 144.97533 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0796 -1.1969 -0.1032 9 6 1.2578 -2.4953 0.1420 10 6 0.7192 -3.0930 -1.1593 11 8 1.8124 -3.4584 -2.0040 12 6 1.4166 -4.0294 -3.2527 13 6 2.6424 -4.3744 -4.0584 14 6 3.1841 -3.4438 -4.9256 15 6 4.3112 -3.7578 -5.6614 16 6 4.8915 -5.0065 -5.5384 17 6 4.3469 -5.9398 -4.6748 18 17 5.0756 -7.5078 -4.5194 19 6 3.2216 -5.6230 -3.9346 20 6 1.7340 -3.4684 1.2225 21 6 0.4252 -2.6968 1.4097 22 1 -0.4849 0.8400 0.0004 23 1 0.0976 -2.3560 -1.6678 24 1 0.1232 -3.9773 -0.9336 25 1 0.8347 -4.9330 -3.0708 26 1 0.8097 -3.3115 -3.8044 27 1 2.7282 -2.4698 -5.0257 28 1 4.7362 -3.0290 -6.3356 29 1 5.7701 -5.2529 -6.1162 30 1 2.7963 -6.3512 -3.2599 31 1 1.6636 -4.5343 1.0062 32 1 2.5871 -3.1671 1.8304 33 1 0.4179 -1.8884 2.1408 34 1 -0.5064 -3.2549 1.3166 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088272213.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:13 Heat of formation + Delta-G solvation = -8.310273 kcal Electronic energy + Delta-G solvation = -17281.958265 eV Core-core repulsion = 14399.363112 eV Total energy + Delta-G solvation = -2882.595154 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.40344 -37.46474 -36.50141 -35.54817 -31.92287 -31.73971 -30.70855 -26.84047 -25.50366 -24.59310 -22.66531 -21.39196 -21.02074 -19.15454 -17.02988 -16.30224 -15.78999 -15.56288 -15.36668 -14.69375 -14.32279 -14.16109 -13.69896 -13.43761 -13.32781 -12.76165 -11.98561 -11.70960 -11.57698 -11.43199 -11.25313 -11.16458 -10.96717 -10.79687 -10.59519 -10.44017 -10.17441 -9.51752 -9.05839 -8.93072 -8.68759 -8.59398 -8.39304 -8.09233 -6.01584 -4.04336 1.15512 1.25267 2.08597 3.29805 3.38127 3.43883 3.56543 4.42839 4.49270 4.79224 4.90982 5.13222 5.27496 5.29400 5.34400 5.47891 5.51741 5.74094 5.81568 5.92876 6.13454 6.19160 6.32402 6.33227 6.42778 6.59798 6.70214 6.71856 6.79354 6.82335 7.09969 7.46749 7.52020 7.92574 8.09573 8.50145 8.97161 9.60210 11.08143 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.022662 B = 0.004594 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.272720 B = 6093.078024 C = 6699.824433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.067 3.933 3 Si 0.889 3.111 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.479 4.479 8 H 0.061 0.939 9 C 0.043 3.957 10 C 0.108 3.892 11 O -0.364 6.364 12 C 0.097 3.903 13 C -0.062 4.062 14 C -0.092 4.092 15 C -0.111 4.111 16 C -0.113 4.113 17 C -0.038 4.038 18 Cl -0.079 7.079 19 C -0.092 4.092 20 C -0.206 4.206 21 C -0.150 4.150 22 H 0.258 0.742 23 H 0.055 0.945 24 H 0.016 0.984 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.835 -10.058 -10.659 15.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.135 4.135 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.517 4.517 8 H 0.079 0.921 9 C 0.042 3.958 10 C 0.032 3.968 11 O -0.284 6.284 12 C 0.020 3.980 13 C -0.062 4.062 14 C -0.110 4.110 15 C -0.129 4.129 16 C -0.132 4.132 17 C -0.065 4.065 18 Cl -0.050 7.050 19 C -0.110 4.110 20 C -0.243 4.243 21 C -0.188 4.188 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.034 0.966 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.150 0.850 28 H 0.150 0.850 29 H 0.148 0.852 30 H 0.151 0.849 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.927 -10.042 -10.583 15.399 hybrid contribution 0.148 0.754 -0.016 0.769 sum 5.075 -9.288 -10.599 14.978 Atomic orbital electron populations 1.70012 1.05839 1.26273 1.50157 1.24976 0.94814 0.98877 0.94792 0.86580 0.80412 0.83815 0.77504 1.19657 1.21103 1.21024 1.20434 0.93066 0.88444 1.49773 0.92076 1.18742 0.98291 0.93993 0.84750 1.22229 0.87446 0.95180 0.91960 1.88051 1.33092 1.81039 1.26191 1.21199 0.92379 0.97462 0.86966 1.19711 0.97281 0.92965 0.96252 1.21265 0.95511 0.99229 0.95011 1.21095 0.95992 0.95958 0.99893 1.21019 1.00432 0.93168 0.98575 1.20851 0.96902 0.87565 1.01143 1.98355 1.82720 1.26653 1.97264 1.20960 0.94430 0.97300 0.98350 1.22967 0.98326 0.95767 1.07267 1.22518 0.92142 1.01198 1.02912 0.93204 0.92713 0.96630 0.93309 0.92673 0.84992 0.85049 0.85205 0.84937 0.91675 0.90406 0.89749 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.89 12.88 55.43 0.71 -24.18 16 2 C 0.07 1.86 5.38 -17.82 -0.10 1.76 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.48 -13.33 8.77 -34.44 -0.30 -13.63 16 8 H 0.06 1.75 7.82 -52.49 -0.41 1.34 16 9 C 0.04 1.08 1.62 -155.66 -0.25 0.82 16 10 C 0.11 2.47 5.76 37.16 0.21 2.68 16 11 O -0.36 -7.89 10.25 -35.23 -0.36 -8.25 16 12 C 0.10 1.61 6.06 36.00 0.22 1.82 16 13 C -0.06 -0.93 5.51 -104.63 -0.58 -1.51 16 14 C -0.09 -1.26 9.70 -39.58 -0.38 -1.64 16 15 C -0.11 -1.30 10.05 -39.59 -0.40 -1.69 16 16 C -0.11 -1.32 9.83 -39.55 -0.39 -1.71 16 17 C -0.04 -0.49 6.32 -39.50 -0.25 -0.74 16 18 Cl -0.08 -0.92 28.96 -51.86 -1.50 -2.43 16 19 C -0.09 -1.29 9.49 -39.55 -0.38 -1.66 16 20 C -0.21 -4.65 9.96 -26.69 -0.27 -4.92 16 21 C -0.15 -3.54 9.37 -26.69 -0.25 -3.79 16 22 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 23 H 0.05 1.33 8.14 -51.93 -0.42 0.91 16 24 H 0.02 0.32 8.09 -51.93 -0.42 -0.10 16 25 H 0.05 0.72 8.09 -51.93 -0.42 0.30 16 26 H 0.06 0.86 8.08 -51.93 -0.42 0.44 16 27 H 0.13 1.71 8.06 -52.48 -0.42 1.28 16 28 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 30 H 0.13 1.74 8.06 -52.48 -0.42 1.32 16 31 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 33 H 0.08 2.11 8.14 -51.93 -0.42 1.68 16 34 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 314.10 15.07 4.73 4.73 Total: -1.00 -29.21 314.10 -9.15 -38.36 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -4.61 Total: -0.27 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: -3.10 Total: -24.21 kcal Atomic # 7 Polarization: -24.89 SS G_CDS: 0.71 Total: -24.18 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: -0.36 Total: -8.25 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.50 Total: -2.43 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.21 -9.15 -38.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088272213.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.053 kcal (2) G-P(sol) polarization free energy of solvation -29.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds