Wall clock time and date at job start Mon Mar 30 2020 06:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00199 * 2 1 4 4 H 1.48506 * 109.47234 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47251 * 300.00138 * 3 2 1 6 6 H 1.48500 * 109.46998 * 60.00030 * 3 2 1 7 7 C 1.37885 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99972 * 173.70038 * 7 2 1 9 9 C 1.50697 * 119.99930 * 353.70316 * 7 2 1 10 10 C 1.52998 * 115.55023 * 86.11059 * 9 7 2 11 11 O 1.42904 * 109.47123 * 65.11243 * 10 9 7 12 12 C 1.42896 * 114.00132 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47198 * 179.97438 * 12 11 10 14 14 C 1.38264 * 119.99671 * 269.72466 * 13 12 11 15 15 C 1.38217 * 120.03107 * 179.76915 * 14 13 12 16 16 C 1.38242 * 120.00775 * 0.50586 * 15 14 13 17 17 C 1.38327 * 119.98573 * 359.74580 * 16 15 14 18 18 Cl 1.73604 * 120.00810 * 180.02562 * 17 16 15 19 19 C 1.38190 * 119.99349 * 89.99828 * 13 12 11 20 20 C 1.53003 * 117.49843 * 231.78180 * 9 7 2 21 21 C 1.53001 * 117.49952 * 300.44118 * 9 7 2 22 22 H 0.96994 * 119.99813 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47356 * 305.10966 * 10 9 7 24 24 H 1.09001 * 109.47188 * 185.10799 * 10 9 7 25 25 H 1.09003 * 109.47299 * 299.99880 * 12 11 10 26 26 H 1.09000 * 109.47329 * 59.99487 * 12 11 10 27 27 H 1.08003 * 119.98373 * 359.97438 * 14 13 12 28 28 H 1.07991 * 119.99533 * 180.25498 * 15 14 13 29 29 H 1.08003 * 119.99918 * 179.77417 * 16 15 14 30 30 H 1.08003 * 120.00871 * 359.95798 * 19 13 12 31 31 H 1.08994 * 117.49914 * 215.00155 * 20 9 7 32 32 H 1.08997 * 117.49702 * 0.02562 * 20 9 7 33 33 H 1.09001 * 117.49614 * 359.97438 * 21 9 7 34 34 H 1.09000 * 117.50022 * 144.97533 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0796 -1.1969 -0.1032 9 6 1.2578 -2.4953 0.1420 10 6 0.7192 -3.0930 -1.1593 11 8 1.8124 -3.4584 -2.0040 12 6 1.4166 -4.0294 -3.2527 13 6 2.6424 -4.3744 -4.0584 14 6 3.1841 -3.4438 -4.9256 15 6 4.3112 -3.7578 -5.6614 16 6 4.8915 -5.0065 -5.5384 17 6 4.3469 -5.9398 -4.6748 18 17 5.0756 -7.5078 -4.5194 19 6 3.2216 -5.6230 -3.9346 20 6 1.7340 -3.4684 1.2225 21 6 0.4252 -2.6968 1.4097 22 1 -0.4849 0.8400 0.0004 23 1 0.0976 -2.3560 -1.6678 24 1 0.1232 -3.9773 -0.9336 25 1 0.8347 -4.9330 -3.0708 26 1 0.8097 -3.3115 -3.8044 27 1 2.7282 -2.4698 -5.0257 28 1 4.7362 -3.0290 -6.3356 29 1 5.7701 -5.2529 -6.1162 30 1 2.7963 -6.3512 -3.2599 31 1 1.6636 -4.5343 1.0062 32 1 2.5871 -3.1671 1.8304 33 1 0.4179 -1.8884 2.1408 34 1 -0.5064 -3.2549 1.3166 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088272213.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:13 Heat of formation + Delta-G solvation = -22.546482 kcal Electronic energy + Delta-G solvation = -17282.575593 eV Core-core repulsion = 14399.363112 eV Total energy + Delta-G solvation = -2883.212482 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.46111 -39.11318 -37.59305 -37.13158 -33.97915 -32.89146 -31.70205 -28.43492 -27.33992 -26.21088 -23.65647 -22.92287 -22.42463 -21.07661 -18.28717 -17.97916 -17.07201 -17.03560 -16.64130 -16.50672 -15.90178 -15.67088 -14.92339 -14.71832 -14.42134 -14.34758 -13.56018 -13.25528 -13.09546 -12.88143 -12.73534 -12.52167 -12.36052 -12.33052 -12.21855 -12.04113 -11.72915 -11.38650 -10.88383 -10.44249 -10.35865 -10.00411 -9.92144 -9.68734 -8.10372 -6.19061 0.13181 0.25224 1.11810 1.39620 1.42494 1.53779 2.43798 2.49118 3.09459 3.19701 3.59280 3.81410 3.86859 4.08438 4.21986 4.29063 4.32836 4.46899 4.52968 4.55316 4.60788 4.76425 4.84992 4.90565 4.92583 5.00303 5.20951 5.23470 5.34345 5.54340 5.62031 5.63724 5.79104 5.81025 6.39414 6.56267 6.84414 7.47913 8.98713 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.022662 B = 0.004594 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.272720 B = 6093.078024 C = 6699.824433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.027 3.973 3 Si 0.947 3.053 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.498 4.498 8 H 0.042 0.958 9 C 0.007 3.993 10 C 0.121 3.879 11 O -0.388 6.388 12 C 0.094 3.906 13 C -0.084 4.084 14 C -0.107 4.107 15 C -0.106 4.106 16 C -0.108 4.108 17 C -0.047 4.047 18 Cl -0.070 7.070 19 C -0.102 4.102 20 C -0.187 4.187 21 C -0.147 4.147 22 H 0.260 0.740 23 H 0.029 0.971 24 H 0.037 0.963 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.132 0.868 28 H 0.162 0.838 29 H 0.157 0.843 30 H 0.135 0.865 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.839 -10.573 -11.616 16.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.173 4.173 3 Si 0.773 3.227 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.536 4.536 8 H 0.061 0.939 9 C 0.007 3.993 10 C 0.045 3.955 11 O -0.308 6.308 12 C 0.017 3.983 13 C -0.084 4.084 14 C -0.125 4.125 15 C -0.124 4.124 16 C -0.127 4.127 17 C -0.073 4.073 18 Cl -0.041 7.041 19 C -0.121 4.121 20 C -0.224 4.224 21 C -0.185 4.185 22 H 0.069 0.931 23 H 0.047 0.953 24 H 0.055 0.945 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.150 0.850 28 H 0.180 0.820 29 H 0.175 0.825 30 H 0.153 0.847 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.934 -10.568 -11.545 16.738 hybrid contribution -0.109 0.851 0.224 0.887 sum 5.825 -9.717 -11.320 16.016 Atomic orbital electron populations 1.70091 1.06821 1.27014 1.50658 1.25602 0.95604 1.01642 0.94481 0.85680 0.79082 0.80215 0.77737 1.19733 1.20466 1.20407 1.20594 0.92451 0.90322 1.50251 0.93927 1.18940 0.99680 0.94262 0.86437 1.21897 0.87415 0.95193 0.91025 1.87992 1.33223 1.81546 1.28052 1.21391 0.93754 0.97914 0.85204 1.19676 0.97562 0.93988 0.97213 1.21447 0.96464 0.99141 0.95433 1.21433 0.94896 0.96607 0.99424 1.21387 1.00795 0.92658 0.97830 1.20994 0.96735 0.88334 1.01253 1.98357 1.82424 1.26034 1.97251 1.21026 0.95063 0.97087 0.98889 1.22960 0.97510 0.96602 1.05316 1.22433 0.93403 1.01029 1.01634 0.93069 0.95251 0.94500 0.91584 0.92438 0.84969 0.82005 0.82529 0.84725 0.89249 0.90715 0.91823 0.90149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.49 12.88 21.45 0.28 -51.21 16 2 C 0.03 1.47 5.38 84.66 0.46 1.93 16 3 Si 0.95 43.88 29.54 68.60 2.03 45.91 16 4 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.50 -28.12 8.77 25.60 0.22 -27.90 16 8 H 0.04 2.49 7.82 -2.91 -0.02 2.46 16 9 C 0.01 0.36 1.62 -52.93 -0.09 0.28 16 10 C 0.12 5.54 5.76 71.98 0.41 5.96 16 11 O -0.39 -16.87 10.25 -148.98 -1.53 -18.40 16 12 C 0.09 3.09 6.06 71.24 0.43 3.52 16 13 C -0.08 -2.49 5.51 -19.87 -0.11 -2.60 16 14 C -0.11 -2.82 9.70 22.27 0.22 -2.61 16 15 C -0.11 -2.21 10.05 22.27 0.22 -1.99 16 16 C -0.11 -2.24 9.83 22.29 0.22 -2.02 16 17 C -0.05 -1.12 6.32 22.32 0.14 -0.98 16 18 Cl -0.07 -1.51 28.96 -2.72 -0.08 -1.59 16 19 C -0.10 -2.77 9.49 22.29 0.21 -2.56 16 20 C -0.19 -8.26 9.96 30.62 0.30 -7.96 16 21 C -0.15 -6.91 9.37 30.62 0.29 -6.62 16 22 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 23 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.04 1.50 8.09 -2.39 -0.02 1.48 16 25 H 0.07 1.90 8.09 -2.39 -0.02 1.88 16 26 H 0.06 1.82 8.08 -2.39 -0.02 1.81 16 27 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 28 H 0.16 2.34 8.06 -2.92 -0.02 2.31 16 29 H 0.16 2.36 8.06 -2.91 -0.02 2.33 16 30 H 0.13 3.46 8.06 -2.91 -0.02 3.44 16 31 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 32 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16 33 H 0.06 3.21 8.14 -2.39 -0.02 3.19 16 34 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 Total: -1.00 -61.98 314.10 4.71 -57.27 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 1.08 Total: 11.56 kcal Atomic # 6 Polarization: -46.48 SS G_CDS: 2.94 Total: -43.55 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: 0.28 Total: -51.21 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -1.53 Total: -18.40 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.08 Total: -1.59 kcal Total: -61.98 4.71 -57.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088272213.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.728 kcal (2) G-P(sol) polarization free energy of solvation -61.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds