Wall clock time and date at job start Mon Mar 30 2020 06:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 120.00192 * 2 1 4 4 H 1.48507 * 109.46840 * 270.00625 * 3 2 1 5 5 H 1.48503 * 109.46830 * 29.99873 * 3 2 1 6 6 H 1.48492 * 109.47481 * 150.00245 * 3 2 1 7 7 C 1.37873 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00401 * 173.69985 * 7 2 1 9 9 C 1.50704 * 120.00083 * 353.69649 * 7 2 1 10 10 C 1.52996 * 115.54760 * 86.10752 * 9 7 2 11 11 O 1.42898 * 109.46935 * 65.11750 * 10 9 7 12 12 C 1.42902 * 114.00190 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47316 * 180.02562 * 12 11 10 14 14 C 1.38246 * 119.99065 * 89.99833 * 13 12 11 15 15 C 1.38211 * 120.01351 * 180.27590 * 14 13 12 16 16 C 1.38361 * 119.98776 * 359.46938 * 15 14 13 17 17 Cl 1.73593 * 120.01213 * 180.23075 * 16 15 14 18 18 C 1.38350 * 119.96919 * 0.55113 * 16 15 14 19 19 C 1.38222 * 119.99054 * 359.70478 * 18 16 15 20 20 C 1.52994 * 117.50238 * 231.78612 * 9 7 2 21 21 C 1.53004 * 117.49557 * 300.44709 * 9 7 2 22 22 H 0.97004 * 119.99950 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47616 * 305.11729 * 10 9 7 24 24 H 1.09002 * 109.47280 * 185.11419 * 10 9 7 25 25 H 1.08995 * 109.47204 * 59.99619 * 12 11 10 26 26 H 1.09006 * 109.46846 * 299.99801 * 12 11 10 27 27 H 1.07997 * 119.98821 * 0.02562 * 14 13 12 28 28 H 1.08001 * 120.00399 * 179.70000 * 15 14 13 29 29 H 1.08006 * 120.00561 * 179.67726 * 18 16 15 30 30 H 1.07995 * 119.99129 * 180.02562 * 19 18 16 31 31 H 1.09004 * 117.50044 * 215.00036 * 20 9 7 32 32 H 1.09003 * 117.49998 * 0.02562 * 20 9 7 33 33 H 1.09001 * 117.50302 * 359.96600 * 21 9 7 34 34 H 1.09001 * 117.50146 * 144.97448 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0796 -1.1968 -0.1032 9 6 1.2579 -2.4953 0.1422 10 6 0.7192 -3.0930 -1.1591 11 8 1.8123 -3.4584 -2.0038 12 6 1.4164 -4.0305 -3.2520 13 6 2.6422 -4.3766 -4.0573 14 6 3.2212 -5.6257 -3.9322 15 6 4.3488 -5.9416 -4.6663 16 6 4.8917 -5.0114 -5.5348 17 17 6.3044 -5.4096 -6.4616 18 6 4.3120 -3.7614 -5.6593 19 6 3.1874 -3.4447 -4.9206 20 6 1.7341 -3.4682 1.2226 21 6 0.4254 -2.6967 1.4100 22 1 -0.4850 0.8401 0.0004 23 1 0.0976 -2.3560 -1.6676 24 1 0.1231 -3.9773 -0.9333 25 1 0.8090 -3.3133 -3.8040 26 1 0.8350 -4.9343 -3.0693 27 1 2.7947 -6.3533 -3.2576 28 1 4.8039 -6.9158 -4.5648 29 1 4.7383 -3.0329 -6.3332 30 1 2.7346 -2.4691 -5.0181 31 1 1.6637 -4.5343 1.0064 32 1 2.5872 -3.1670 1.8306 33 1 0.4181 -1.8882 2.1411 34 1 -0.5063 -3.2548 1.3170 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088272214.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:43 Heat of formation + Delta-G solvation = -22.499768 kcal Electronic energy + Delta-G solvation = -17227.494668 eV Core-core repulsion = 14344.284212 eV Total energy + Delta-G solvation = -2883.210456 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.081 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.45692 -39.10511 -37.63072 -37.08481 -33.97448 -32.64235 -32.05131 -28.36149 -27.27927 -26.12274 -23.82229 -22.90466 -22.34905 -21.06391 -18.27862 -18.08439 -17.09364 -17.02211 -16.65467 -16.43864 -15.87180 -15.55440 -14.93645 -14.51362 -14.43493 -14.42762 -13.68845 -13.27850 -13.18977 -12.87958 -12.74457 -12.52246 -12.40694 -12.31495 -12.09421 -11.95272 -11.78141 -11.37908 -10.87377 -10.43002 -10.34316 -10.01271 -9.97131 -9.64226 -8.10256 -6.18758 0.05933 0.32216 1.11359 1.40359 1.42119 1.52045 2.43404 2.47647 3.11387 3.20200 3.62310 3.77376 3.92190 3.97695 4.20519 4.31271 4.36080 4.53561 4.54014 4.61814 4.62870 4.71793 4.85382 4.91853 4.99746 5.01756 5.20946 5.21615 5.24914 5.57794 5.63549 5.65140 5.79300 5.79549 6.40258 6.57896 6.84637 7.48180 8.98516 Molecular weight = 266.08amu Principal moments of inertia in cm(-1) A = 0.022303 B = 0.004400 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.134082 B = 6362.210645 C = 7054.518680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.027 3.973 3 Si 0.945 3.055 4 H -0.277 1.277 5 H -0.280 1.280 6 H -0.273 1.273 7 C -0.500 4.500 8 H 0.042 0.958 9 C 0.009 3.991 10 C 0.121 3.879 11 O -0.389 6.389 12 C 0.093 3.907 13 C -0.091 4.091 14 C -0.091 4.091 15 C -0.114 4.114 16 C -0.040 4.040 17 Cl -0.068 7.068 18 C -0.117 4.117 19 C -0.099 4.099 20 C -0.185 4.185 21 C -0.149 4.149 22 H 0.260 0.740 23 H 0.027 0.973 24 H 0.039 0.961 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.149 0.851 28 H 0.155 0.845 29 H 0.148 0.852 30 H 0.133 0.867 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.485 -11.340 -11.018 16.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.173 4.173 3 Si 0.771 3.229 4 H -0.203 1.203 5 H -0.206 1.206 6 H -0.197 1.197 7 C -0.538 4.538 8 H 0.061 0.939 9 C 0.008 3.992 10 C 0.045 3.955 11 O -0.308 6.308 12 C 0.016 3.984 13 C -0.091 4.091 14 C -0.109 4.109 15 C -0.132 4.132 16 C -0.067 4.067 17 Cl -0.039 7.039 18 C -0.136 4.136 19 C -0.117 4.117 20 C -0.222 4.222 21 C -0.187 4.187 22 H 0.069 0.931 23 H 0.046 0.954 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.166 0.834 28 H 0.173 0.827 29 H 0.166 0.834 30 H 0.151 0.849 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.642 -11.221 -11.044 16.725 hybrid contribution 0.062 1.171 -0.044 1.174 sum 5.704 -10.050 -11.089 16.015 Atomic orbital electron populations 1.70082 1.06787 1.27042 1.50630 1.25582 0.95590 1.01577 0.94519 0.85768 0.78905 0.80071 0.78178 1.20321 1.20561 1.19734 1.20581 0.92473 0.90420 1.50289 0.93940 1.18908 0.99640 0.94180 0.86444 1.21891 0.87425 0.95229 0.90986 1.87991 1.33208 1.81547 1.28098 1.21409 0.93839 0.97992 0.85126 1.19896 0.97522 0.94905 0.96775 1.21249 0.94992 0.96354 0.98281 1.21272 0.96177 1.00204 0.95580 1.21094 0.91568 0.96078 0.97965 1.98359 1.39202 1.93973 1.72381 1.21209 0.95967 0.95689 1.00692 1.21223 0.95600 0.99394 0.95474 1.22959 0.97400 0.96665 1.05199 1.22441 0.93481 1.01075 1.01665 0.93085 0.95443 0.94305 0.92897 0.91095 0.83371 0.82699 0.83401 0.84915 0.89043 0.90804 0.91915 0.90102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.45 12.88 21.45 0.28 -51.17 16 2 C 0.03 1.51 5.38 84.65 0.46 1.96 16 3 Si 0.94 43.98 29.54 68.60 2.03 46.00 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.50 -28.11 8.77 25.60 0.22 -27.88 16 8 H 0.04 2.47 7.82 -2.91 -0.02 2.44 16 9 C 0.01 0.43 1.62 -52.93 -0.09 0.35 16 10 C 0.12 5.46 5.76 71.98 0.41 5.87 16 11 O -0.39 -16.55 10.25 -148.98 -1.53 -18.07 16 12 C 0.09 2.96 6.06 71.23 0.43 3.39 16 13 C -0.09 -2.61 5.51 -19.86 -0.11 -2.71 16 14 C -0.09 -2.20 9.70 22.27 0.22 -1.98 16 15 C -0.11 -2.48 9.83 22.29 0.22 -2.26 16 16 C -0.04 -0.93 6.32 22.33 0.14 -0.79 16 17 Cl -0.07 -1.38 28.96 -2.72 -0.08 -1.46 16 18 C -0.12 -2.81 9.83 22.29 0.22 -2.59 16 19 C -0.10 -2.71 9.70 22.27 0.22 -2.49 16 20 C -0.19 -8.04 9.96 30.62 0.30 -7.73 16 21 C -0.15 -6.91 9.37 30.62 0.29 -6.62 16 22 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 23 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.04 1.54 8.09 -2.39 -0.02 1.52 16 25 H 0.05 1.66 8.09 -2.39 -0.02 1.64 16 26 H 0.07 1.92 8.08 -2.38 -0.02 1.90 16 27 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 28 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 29 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 30 H 0.13 3.56 8.06 -2.91 -0.02 3.54 16 31 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 32 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 33 H 0.06 3.14 8.14 -2.39 -0.02 3.12 16 34 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 Total: -1.00 -61.36 314.10 4.71 -56.65 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 1.08 Total: 11.54 kcal Atomic # 6 Polarization: -46.43 SS G_CDS: 2.93 Total: -43.49 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.28 Total: -51.17 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -1.53 Total: -18.07 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -0.08 Total: -1.46 kcal Total: -61.36 4.71 -56.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088272214.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.150 kcal (2) G-P(sol) polarization free energy of solvation -61.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds