Wall clock time and date at job start Mon Mar 30 2020 07:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48505 * 109.46678 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47258 * 299.99866 * 3 2 1 6 6 H 1.48493 * 109.47346 * 60.00472 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.36068 * 126.35582 * 264.69020 * 12 11 10 14 14 N 1.30098 * 110.09234 * 179.81634 * 13 12 11 15 15 C 1.35825 * 109.65463 * 0.45465 * 14 13 12 16 16 C 1.39789 * 133.50394 * 179.70002 * 15 14 13 17 17 C 1.37730 * 119.78375 * 180.02562 * 16 15 14 18 18 F 1.35096 * 119.77345 * 179.97438 * 17 16 15 19 19 C 1.39187 * 120.45491 * 0.02562 * 17 16 15 20 20 F 1.35096 * 119.80833 * 179.97438 * 19 17 16 21 21 C 1.37984 * 120.38077 * 359.93648 * 19 17 16 22 22 C 1.38169 * 126.35097 * 85.00437 * 12 11 10 23 23 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 25 25 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 26 26 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 27 27 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 28 28 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 29 29 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 30 30 H 1.07996 * 124.95010 * 359.97438 * 13 12 11 31 31 H 1.07998 * 120.11169 * 0.02562 * 16 15 14 32 32 H 1.08002 * 120.07452 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4321 -6.1006 -0.0018 13 6 2.8783 -6.7797 -1.0932 14 7 3.7188 -7.7045 -0.7313 15 6 3.8618 -7.6887 0.6193 16 6 4.6164 -8.4506 1.5160 17 6 4.5464 -8.1864 2.8659 18 9 5.2755 -8.9231 3.7324 19 6 3.7289 -7.1662 3.3436 20 9 3.6697 -6.9186 4.6704 21 6 2.9791 -6.4058 2.4698 22 6 3.0387 -6.6601 1.1064 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5566 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8725 -3.6048 0.8878 27 1 2.8712 -3.6040 -0.8921 28 1 0.8543 -5.0449 0.8894 29 1 0.8525 -5.0447 -0.8905 30 1 2.5804 -6.5784 -2.1115 31 1 5.2524 -9.2438 1.1516 32 1 2.3467 -5.6151 2.8458 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131324221.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:21 Heat of formation + Delta-G solvation = -31.374513 kcal Electronic energy + Delta-G solvation = -19011.394476 eV Core-core repulsion = 15608.295253 eV Total energy + Delta-G solvation = -3403.099223 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.093 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.47234 -48.54956 -42.26440 -37.06599 -35.45206 -33.38313 -31.59020 -30.07883 -29.06226 -26.98338 -23.95129 -23.68102 -22.34042 -21.04374 -20.49413 -18.24198 -17.87528 -17.34330 -16.47496 -16.40544 -15.74575 -15.29422 -15.16756 -14.97864 -14.58544 -14.55282 -14.17608 -14.00504 -13.52142 -13.02819 -12.76058 -12.30546 -11.84234 -11.74719 -11.30670 -11.09088 -11.00385 -10.75282 -10.44491 -10.19293 -10.02401 -9.64942 -9.30152 -8.51474 -8.37769 -8.27412 -6.16210 -4.19577 0.53902 1.01056 2.50524 2.60125 3.22170 3.30551 3.34417 3.42495 3.64262 4.02058 4.17760 4.34087 4.52728 4.73212 4.93829 4.98535 5.20597 5.25332 5.34745 5.36364 5.59379 5.64348 5.67362 5.99895 6.18961 6.33353 6.38994 6.58726 6.71951 7.02669 7.42088 7.51113 7.68056 7.81021 8.21576 8.86570 9.46198 10.94933 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.024087 B = 0.004155 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.184640 B = 6737.416738 C = 7409.587415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.126 4.126 11 C 0.102 3.898 12 N -0.477 5.477 13 C 0.278 3.722 14 N -0.501 5.501 15 C 0.061 3.939 16 C -0.075 4.075 17 C 0.059 3.941 18 F -0.130 7.130 19 C 0.080 3.920 20 F -0.126 7.126 21 C -0.107 4.107 22 C 0.064 3.936 23 H 0.262 0.738 24 H 0.020 0.980 25 H 0.019 0.981 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.219 0.781 31 H 0.151 0.849 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.410 -15.127 1.620 15.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.164 4.164 11 C -0.019 4.019 12 N -0.163 5.163 13 C -0.008 4.008 14 N -0.220 5.220 15 C -0.059 4.059 16 C -0.095 4.095 17 C 0.036 3.964 18 F -0.108 7.108 19 C 0.058 3.942 20 F -0.104 7.104 21 C -0.129 4.129 22 C -0.048 4.048 23 H 0.071 0.929 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.107 0.893 29 H 0.117 0.883 30 H 0.235 0.765 31 H 0.168 0.832 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.591 -15.464 1.157 16.173 hybrid contribution 0.034 1.597 0.837 1.804 sum 4.626 -13.867 1.994 14.753 Atomic orbital electron populations 1.69956 1.06071 1.26803 1.50433 1.25005 0.94868 0.99389 0.94989 0.86515 0.80136 0.83547 0.77731 1.19691 1.20873 1.20873 1.21188 0.93099 0.90750 1.51235 0.92564 1.19055 0.93682 0.90923 0.97636 1.22093 0.99895 0.92621 1.01795 1.22381 0.90344 0.84419 1.04718 1.45911 1.36735 1.28636 1.05064 1.25514 0.92531 0.88818 0.93906 1.70497 1.19252 1.22317 1.09938 1.18670 0.99405 0.96889 0.90948 1.19868 1.00181 1.00626 0.88843 1.17057 0.97318 0.94489 0.87523 1.91515 1.75339 1.75302 1.68659 1.17005 1.00958 0.97962 0.78309 1.91531 1.95298 1.93596 1.30024 1.19696 1.02069 1.01667 0.89421 1.18465 0.99391 0.97742 0.89170 0.92857 0.96152 0.96236 0.92516 0.92302 0.89254 0.88348 0.76492 0.83175 0.83331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.44 13.29 55.43 0.74 -24.70 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.52 -13.92 9.11 -34.44 -0.31 -14.23 16 8 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 10 C -0.13 -2.21 5.48 -26.73 -0.15 -2.35 16 11 C 0.10 1.35 6.16 -4.04 -0.02 1.33 16 12 N -0.48 -6.24 2.81 -115.77 -0.33 -6.56 16 13 C 0.28 3.30 12.50 -89.76 -1.12 2.18 16 14 N -0.50 -6.99 11.27 -12.04 -0.14 -7.13 16 15 C 0.06 0.85 7.23 -84.68 -0.61 0.24 16 16 C -0.07 -0.93 10.07 -39.19 -0.39 -1.33 16 17 C 0.06 0.76 7.29 -39.41 -0.29 0.47 16 18 F -0.13 -1.69 17.16 2.25 0.04 -1.65 16 19 C 0.08 1.07 7.30 -39.32 -0.29 0.78 16 20 F -0.13 -1.75 17.17 2.25 0.04 -1.71 16 21 C -0.11 -1.42 10.01 -39.46 -0.40 -1.82 16 22 C 0.06 0.89 6.87 -83.96 -0.58 0.31 16 23 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.10 1.12 8.13 -51.93 -0.42 0.70 16 30 H 0.22 1.67 8.06 -52.49 -0.42 1.24 16 31 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 32 H 0.15 1.83 8.06 -52.49 -0.42 1.40 16 LS Contribution 294.05 15.07 4.43 4.43 Total: -1.00 -29.83 294.05 -7.98 -37.81 By element: Atomic # 1 Polarization: -0.47 SS G_CDS: -3.35 Total: -3.82 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -4.40 Total: -12.47 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.28 Total: -38.39 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.08 Total: -3.36 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.83 -7.98 -37.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131324221.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.432 kcal (2) G-P(sol) polarization free energy of solvation -29.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds