Wall clock time and date at job start Mon Mar 30 2020 07:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48505 * 109.46678 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47258 * 299.99866 * 3 2 1 6 6 H 1.48493 * 109.47346 * 60.00472 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.36068 * 126.35582 * 264.69020 * 12 11 10 14 14 N 1.30098 * 110.09234 * 179.81634 * 13 12 11 15 15 C 1.35825 * 109.65463 * 0.45465 * 14 13 12 16 16 C 1.39789 * 133.50394 * 179.70002 * 15 14 13 17 17 C 1.37730 * 119.78375 * 180.02562 * 16 15 14 18 18 F 1.35096 * 119.77345 * 179.97438 * 17 16 15 19 19 C 1.39187 * 120.45491 * 0.02562 * 17 16 15 20 20 F 1.35096 * 119.80833 * 179.97438 * 19 17 16 21 21 C 1.37984 * 120.38077 * 359.93648 * 19 17 16 22 22 C 1.38169 * 126.35097 * 85.00437 * 12 11 10 23 23 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 25 25 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 26 26 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 27 27 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 28 28 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 29 29 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 30 30 H 1.07996 * 124.95010 * 359.97438 * 13 12 11 31 31 H 1.07998 * 120.11169 * 0.02562 * 16 15 14 32 32 H 1.08002 * 120.07452 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4321 -6.1006 -0.0018 13 6 2.8783 -6.7797 -1.0932 14 7 3.7188 -7.7045 -0.7313 15 6 3.8618 -7.6887 0.6193 16 6 4.6164 -8.4506 1.5160 17 6 4.5464 -8.1864 2.8659 18 9 5.2755 -8.9231 3.7324 19 6 3.7289 -7.1662 3.3436 20 9 3.6697 -6.9186 4.6704 21 6 2.9791 -6.4058 2.4698 22 6 3.0387 -6.6601 1.1064 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5566 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8725 -3.6048 0.8878 27 1 2.8712 -3.6040 -0.8921 28 1 0.8543 -5.0449 0.8894 29 1 0.8525 -5.0447 -0.8905 30 1 2.5804 -6.5784 -2.1115 31 1 5.2524 -9.2438 1.1516 32 1 2.3467 -5.6151 2.8458 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131324221.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:19 Heat of formation + Delta-G solvation = -45.619323 kcal Electronic energy + Delta-G solvation = -19012.012177 eV Core-core repulsion = 15608.295253 eV Total energy + Delta-G solvation = -3403.716925 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.093 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -50.52056 -49.59899 -43.26676 -38.10332 -36.77426 -35.06141 -33.10138 -31.24818 -30.07332 -28.55133 -25.46965 -24.75623 -23.41838 -22.45220 -21.70253 -19.26976 -19.03676 -18.36692 -18.30601 -17.45444 -16.91254 -16.46689 -16.35960 -16.22991 -16.03336 -15.78437 -15.15964 -15.07091 -14.58836 -14.47897 -14.10171 -13.88653 -13.30726 -12.93250 -12.81131 -12.73852 -12.49471 -12.19442 -11.77171 -11.68244 -11.42316 -11.17704 -11.08603 -10.56977 -9.41283 -9.30553 -8.22882 -6.32339 -0.45081 -0.02798 1.38280 1.40587 1.48587 1.52412 1.62074 2.39488 2.40572 2.63806 3.04266 3.11953 3.15395 3.61169 3.70882 3.92120 4.06902 4.13938 4.21000 4.34865 4.44040 4.63119 4.68637 4.70123 4.89888 5.10841 5.14990 5.26193 5.48828 5.57010 5.68706 5.82194 6.03906 6.22936 6.69635 6.84042 7.37312 8.88295 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.024087 B = 0.004155 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.184640 B = 6737.416738 C = 7409.587415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.543 4.543 8 H 0.053 0.947 9 C 0.028 3.972 10 C -0.110 4.110 11 C 0.115 3.885 12 N -0.480 5.480 13 C 0.288 3.712 14 N -0.523 5.523 15 C 0.048 3.952 16 C -0.070 4.070 17 C 0.057 3.943 18 F -0.131 7.131 19 C 0.072 3.928 20 F -0.132 7.132 21 C -0.109 4.109 22 C 0.049 3.951 23 H 0.264 0.736 24 H 0.009 0.991 25 H 0.000 1.000 26 H 0.044 0.956 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.125 0.875 30 H 0.259 0.741 31 H 0.170 0.830 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.931 -15.493 0.793 16.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.781 3.219 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.206 1.206 7 C -0.582 4.582 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.148 4.148 11 C -0.006 4.006 12 N -0.167 5.167 13 C 0.004 3.996 14 N -0.242 5.242 15 C -0.071 4.071 16 C -0.090 4.090 17 C 0.034 3.966 18 F -0.110 7.110 19 C 0.050 3.950 20 F -0.110 7.110 21 C -0.131 4.131 22 C -0.062 4.062 23 H 0.073 0.927 24 H 0.027 0.973 25 H 0.019 0.981 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.112 0.888 29 H 0.143 0.857 30 H 0.275 0.725 31 H 0.188 0.812 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 5.129 -15.848 0.336 16.661 hybrid contribution -0.117 1.685 1.078 2.004 sum 5.013 -14.163 1.414 15.090 Atomic orbital electron populations 1.70055 1.07437 1.27701 1.51583 1.25815 0.95678 1.02853 0.94812 0.85541 0.79043 0.79535 0.77815 1.19114 1.20273 1.20591 1.21661 0.93336 0.92579 1.50577 0.92837 1.18925 0.94139 0.91891 0.96050 1.21783 0.98665 0.93143 1.01240 1.22153 0.89740 0.82334 1.06368 1.45879 1.36952 1.28646 1.05244 1.26371 0.90932 0.87369 0.94974 1.70516 1.20401 1.23498 1.09792 1.18927 0.99645 0.97156 0.91389 1.20042 0.99870 1.00687 0.88373 1.17084 0.97322 0.94430 0.87752 1.91510 1.75371 1.75315 1.68759 1.17114 1.01402 0.98382 0.78116 1.91513 1.95384 1.93691 1.30438 1.19751 1.02145 1.01786 0.89416 1.18647 0.99835 0.98181 0.89571 0.92722 0.97257 0.98122 0.93732 0.92168 0.88813 0.85708 0.72550 0.81242 0.82843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.04 13.29 21.45 0.28 -52.75 16 2 C 0.01 0.37 5.46 84.65 0.46 0.84 16 3 Si 0.96 42.49 29.54 68.60 2.03 44.52 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 7 C -0.54 -28.81 9.11 25.60 0.23 -28.58 16 8 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 9 C 0.03 1.26 4.97 29.85 0.15 1.41 16 10 C -0.11 -3.73 5.48 30.59 0.17 -3.57 16 11 C 0.11 2.81 6.16 86.38 0.53 3.34 16 12 N -0.48 -11.51 2.81 -520.20 -1.46 -12.97 16 13 C 0.29 6.02 12.50 180.05 2.25 8.27 16 14 N -0.52 -13.46 11.27 -191.99 -2.16 -15.62 16 15 C 0.05 1.28 7.23 39.44 0.29 1.57 16 16 C -0.07 -1.64 10.07 22.52 0.23 -1.41 16 17 C 0.06 1.41 7.29 22.38 0.16 1.58 16 18 F -0.13 -3.30 17.16 44.97 0.77 -2.53 16 19 C 0.07 1.88 7.30 22.44 0.16 2.05 16 20 F -0.13 -3.63 17.17 44.97 0.77 -2.86 16 21 C -0.11 -2.84 10.01 22.35 0.22 -2.61 16 22 C 0.05 1.30 6.87 38.82 0.27 1.57 16 23 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 24 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 25 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 26 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.12 2.45 8.13 -2.39 -0.02 2.43 16 30 H 0.26 2.88 8.06 -2.91 -0.02 2.85 16 31 H 0.17 3.22 8.06 -2.91 -0.02 3.20 16 32 H 0.15 3.72 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -63.28 294.05 6.49 -56.79 By element: Atomic # 1 Polarization: -0.15 SS G_CDS: 1.14 Total: 0.99 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: 5.12 Total: -15.56 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -3.34 Total: -81.34 kcal Atomic # 9 Polarization: -6.93 SS G_CDS: 1.54 Total: -5.39 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -63.28 6.49 -56.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131324221.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.167 kcal (2) G-P(sol) polarization free energy of solvation -63.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds