Wall clock time and date at job start Mon Mar 30 2020 07:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00356 * 2 1 4 4 H 1.48505 * 109.46737 * 269.99747 * 3 2 1 5 5 H 1.48502 * 109.47070 * 29.99418 * 3 2 1 6 6 H 1.48494 * 109.47126 * 149.99470 * 3 2 1 7 7 C 1.37876 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99600 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00221 * 180.02562 * 7 2 1 10 10 N 1.46898 * 109.47059 * 184.97187 * 9 7 2 11 11 C 1.40023 * 110.99911 * 285.94323 * 10 9 7 12 12 C 1.38699 * 120.08642 * 296.02444 * 11 10 9 13 13 C 1.38261 * 120.01794 * 180.02562 * 12 11 10 14 14 C 1.38257 * 120.19605 * 359.95615 * 13 12 11 15 15 C 1.38360 * 120.18287 * 359.78961 * 14 13 12 16 16 Cl 1.73603 * 120.01051 * 180.26066 * 15 14 13 17 17 C 1.38754 * 119.97563 * 0.48403 * 15 14 13 18 18 N 1.40104 * 120.09599 * 179.76837 * 17 15 14 19 19 C 1.46899 * 110.99985 * 161.98742 * 10 9 7 20 20 C 1.53003 * 117.49862 * 10.08092 * 19 10 9 21 21 C 1.53001 * 117.49795 * 301.45666 * 19 10 9 22 22 H 0.97001 * 119.99779 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46881 * 64.97033 * 9 7 2 24 24 H 1.08995 * 109.46565 * 304.97088 * 9 7 2 25 25 H 1.07997 * 119.99077 * 0.02562 * 12 11 10 26 26 H 1.07999 * 119.89698 * 179.97438 * 13 12 11 27 27 H 1.07999 * 119.91027 * 180.02562 * 14 13 12 28 28 H 0.97002 * 119.99611 * 179.72473 * 18 17 15 29 29 H 0.96996 * 120.00191 * 359.45452 * 18 17 15 30 30 H 1.09002 * 115.54925 * 155.78333 * 19 10 9 31 31 H 1.08999 * 117.49693 * 359.97438 * 20 19 10 32 32 H 1.08991 * 117.49776 * 145.01985 * 20 19 10 33 33 H 1.08998 * 117.49815 * 214.97667 * 21 19 10 34 34 H 1.09002 * 117.49652 * 0.02562 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0012 -2.5739 -0.1184 11 6 3.8294 -3.2731 1.0825 12 6 4.5088 -2.8728 2.2235 13 6 4.3386 -3.5645 3.4084 14 6 3.4911 -4.6557 3.4611 15 6 2.8052 -5.0590 2.3291 16 17 1.7371 -6.4256 2.4019 17 6 2.9750 -4.3736 1.1347 18 7 2.2854 -4.7828 -0.0142 19 6 5.4064 -2.5987 -0.5457 20 6 6.1650 -1.2700 -0.5567 21 6 5.7523 -1.9263 -1.8758 22 1 -0.4850 0.8401 -0.0004 23 1 3.8745 -0.7591 0.9323 24 1 3.8751 -0.6053 -0.8410 25 1 5.1711 -2.0205 2.1863 26 1 4.8689 -3.2514 4.2956 27 1 3.3612 -5.1924 4.3892 28 1 2.4021 -4.3001 -0.8475 29 1 1.6944 -5.5510 0.0227 30 1 5.9645 -3.4950 -0.2746 31 1 5.6212 -0.3775 -0.2473 32 1 7.2223 -1.2920 -0.2928 33 1 6.5382 -2.3800 -2.4796 34 1 4.9372 -1.4652 -2.4336 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163067621.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:58:51 Heat of formation + Delta-G solvation = 60.754838 kcal Electronic energy + Delta-G solvation = -18303.270363 eV Core-core repulsion = 15455.962848 eV Total energy + Delta-G solvation = -2847.307515 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.73722 -37.64821 -35.97933 -34.04193 -33.46854 -32.28783 -29.21829 -28.21478 -26.76374 -22.84837 -22.18232 -21.93170 -21.37794 -19.21241 -17.32068 -16.85989 -16.54824 -15.84828 -15.07778 -14.76776 -14.16044 -13.79288 -13.76905 -13.54362 -13.19877 -12.64321 -12.12429 -11.88588 -11.76426 -11.19994 -11.17018 -11.07834 -10.88328 -10.64172 -10.61385 -10.46143 -10.19474 -9.96213 -9.87205 -9.26787 -8.59697 -8.14929 -7.55588 -6.94413 -6.07318 -4.04293 1.65815 2.02105 2.55791 3.24132 3.32223 3.32863 4.13320 4.14552 4.37807 4.45138 4.54243 5.24650 5.25953 5.32777 5.33394 5.41515 5.52241 5.72278 5.82622 5.95317 6.06586 6.14596 6.37093 6.45148 6.51000 6.63583 6.68180 6.87813 6.97103 7.11449 7.50922 7.74252 7.84412 8.23584 8.39438 8.58561 9.03537 9.53516 11.05742 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.016998 B = 0.007795 C = 0.006473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.810483 B = 3591.057782 C = 4324.630426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.869 3.131 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.508 4.508 8 H 0.085 0.915 9 C 0.165 3.835 10 N -0.460 5.460 11 C 0.059 3.941 12 C -0.094 4.094 13 C -0.169 4.169 14 C -0.074 4.074 15 C -0.120 4.120 16 Cl -0.088 7.088 17 C 0.263 3.737 18 N -0.853 5.853 19 C 0.032 3.968 20 C -0.226 4.226 21 C -0.173 4.173 22 H 0.263 0.737 23 H -0.002 1.002 24 H 0.031 0.969 25 H 0.119 0.881 26 H 0.120 0.880 27 H 0.123 0.877 28 H 0.414 0.586 29 H 0.392 0.608 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.007 -8.394 2.560 13.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.697 3.303 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.546 4.546 8 H 0.103 0.897 9 C 0.040 3.960 10 N -0.178 5.178 11 C -0.040 4.040 12 C -0.114 4.114 13 C -0.190 4.190 14 C -0.093 4.093 15 C -0.152 4.152 16 Cl -0.059 7.059 17 C 0.152 3.848 18 N -0.391 5.391 19 C -0.077 4.077 20 C -0.265 4.265 21 C -0.211 4.211 22 H 0.073 0.927 23 H 0.015 0.985 24 H 0.049 0.951 25 H 0.137 0.863 26 H 0.138 0.862 27 H 0.141 0.859 28 H 0.245 0.755 29 H 0.220 0.780 30 H 0.128 0.872 31 H 0.119 0.881 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 9.438 -8.606 2.172 12.956 hybrid contribution 0.463 1.322 0.318 1.436 sum 9.901 -7.283 2.490 12.541 Atomic orbital electron populations 1.69883 1.06050 1.26738 1.50885 1.24848 0.94688 0.98601 0.94954 0.86959 0.80389 0.84464 0.78532 1.20164 1.21140 1.19327 1.21017 0.88424 0.94991 1.50159 0.89729 1.20415 0.97285 0.82911 0.95343 1.59267 1.14003 1.17625 1.26954 1.17962 0.99893 0.95673 0.90430 1.21498 0.98816 0.98429 0.92702 1.20573 1.02790 0.97787 0.97896 1.20634 0.95673 0.96848 0.96153 1.20099 1.03826 0.96244 0.95038 1.98293 1.65376 1.43857 1.98404 1.17239 0.90405 0.90971 0.86137 1.42567 1.50118 1.35690 1.10705 1.22641 0.89213 0.95218 1.00609 1.23588 1.00591 0.99304 1.03032 1.23048 1.02974 1.04178 0.90886 0.92686 0.98480 0.95134 0.86291 0.86248 0.85879 0.75481 0.77966 0.87206 0.88114 0.89477 0.89083 0.88205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.87 21.13 27.37 -169.99 -4.65 16.48 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.25 6.69 56.52 0.38 -5.88 16 7 C -0.51 -13.95 9.47 -34.44 -0.33 -14.28 16 8 H 0.08 2.52 8.04 -52.48 -0.42 2.10 16 9 C 0.16 3.79 2.36 -4.97 -0.01 3.77 16 10 N -0.46 -9.01 3.80 -164.72 -0.63 -9.64 16 11 C 0.06 1.13 4.24 -83.51 -0.35 0.78 16 12 C -0.09 -1.64 8.51 -39.40 -0.34 -1.98 16 13 C -0.17 -2.62 10.04 -39.57 -0.40 -3.02 16 14 C -0.07 -1.14 9.82 -39.53 -0.39 -1.53 16 15 C -0.12 -2.03 6.33 -39.35 -0.25 -2.28 16 16 Cl -0.09 -1.31 27.59 -51.86 -1.43 -2.74 16 17 C 0.26 4.85 6.77 -83.45 -0.57 4.28 16 18 N -0.85 -14.67 9.04 32.56 0.29 -14.38 16 19 C 0.03 0.52 5.53 -67.71 -0.37 0.15 16 20 C -0.23 -3.46 9.56 -26.73 -0.26 -3.72 16 21 C -0.17 -2.59 9.92 -26.73 -0.27 -2.86 16 22 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 23 H 0.00 -0.06 6.20 -51.93 -0.32 -0.38 16 24 H 0.03 0.70 4.81 -51.93 -0.25 0.45 16 25 H 0.12 2.01 7.62 -52.49 -0.40 1.60 16 26 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 27 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 28 H 0.41 7.41 8.11 -40.82 -0.33 7.08 16 29 H 0.39 5.99 7.51 -40.82 -0.31 5.68 16 30 H 0.11 1.64 8.05 -51.93 -0.42 1.23 16 31 H 0.10 1.76 6.01 -51.93 -0.31 1.45 16 32 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.10 1.66 7.49 -51.93 -0.39 1.27 16 LS Contribution 295.24 15.07 4.45 4.45 Total: -1.00 -29.44 295.24 -8.81 -38.26 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -4.00 Total: 12.72 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -3.62 Total: -18.76 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: 0.44 Total: -50.42 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.65 Total: 16.48 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -1.43 Total: -2.74 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.44 -8.81 -38.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163067621.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.012 kcal (2) G-P(sol) polarization free energy of solvation -29.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds