Wall clock time and date at job start Mon Mar 30 2020 07:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00356 * 2 1 4 4 H 1.48505 * 109.46737 * 269.99747 * 3 2 1 5 5 H 1.48502 * 109.47070 * 29.99418 * 3 2 1 6 6 H 1.48494 * 109.47126 * 149.99470 * 3 2 1 7 7 C 1.37876 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99600 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00221 * 180.02562 * 7 2 1 10 10 N 1.46898 * 109.47059 * 184.97187 * 9 7 2 11 11 C 1.40023 * 110.99911 * 285.94323 * 10 9 7 12 12 C 1.38699 * 120.08642 * 296.02444 * 11 10 9 13 13 C 1.38261 * 120.01794 * 180.02562 * 12 11 10 14 14 C 1.38257 * 120.19605 * 359.95615 * 13 12 11 15 15 C 1.38360 * 120.18287 * 359.78961 * 14 13 12 16 16 Cl 1.73603 * 120.01051 * 180.26066 * 15 14 13 17 17 C 1.38754 * 119.97563 * 0.48403 * 15 14 13 18 18 N 1.40104 * 120.09599 * 179.76837 * 17 15 14 19 19 C 1.46899 * 110.99985 * 161.98742 * 10 9 7 20 20 C 1.53003 * 117.49862 * 10.08092 * 19 10 9 21 21 C 1.53001 * 117.49795 * 301.45666 * 19 10 9 22 22 H 0.97001 * 119.99779 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46881 * 64.97033 * 9 7 2 24 24 H 1.08995 * 109.46565 * 304.97088 * 9 7 2 25 25 H 1.07997 * 119.99077 * 0.02562 * 12 11 10 26 26 H 1.07999 * 119.89698 * 179.97438 * 13 12 11 27 27 H 1.07999 * 119.91027 * 180.02562 * 14 13 12 28 28 H 0.97002 * 119.99611 * 179.72473 * 18 17 15 29 29 H 0.96996 * 120.00191 * 359.45452 * 18 17 15 30 30 H 1.09002 * 115.54925 * 155.78333 * 19 10 9 31 31 H 1.08999 * 117.49693 * 359.97438 * 20 19 10 32 32 H 1.08991 * 117.49776 * 145.01985 * 20 19 10 33 33 H 1.08998 * 117.49815 * 214.97667 * 21 19 10 34 34 H 1.09002 * 117.49652 * 0.02562 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0012 -2.5739 -0.1184 11 6 3.8294 -3.2731 1.0825 12 6 4.5088 -2.8728 2.2235 13 6 4.3386 -3.5645 3.4084 14 6 3.4911 -4.6557 3.4611 15 6 2.8052 -5.0590 2.3291 16 17 1.7371 -6.4256 2.4019 17 6 2.9750 -4.3736 1.1347 18 7 2.2854 -4.7828 -0.0142 19 6 5.4064 -2.5987 -0.5457 20 6 6.1650 -1.2700 -0.5567 21 6 5.7523 -1.9263 -1.8758 22 1 -0.4850 0.8401 -0.0004 23 1 3.8745 -0.7591 0.9323 24 1 3.8751 -0.6053 -0.8410 25 1 5.1711 -2.0205 2.1863 26 1 4.8689 -3.2514 4.2956 27 1 3.3612 -5.1924 4.3892 28 1 2.4021 -4.3001 -0.8475 29 1 1.6944 -5.5510 0.0227 30 1 5.9645 -3.4950 -0.2746 31 1 5.6212 -0.3775 -0.2473 32 1 7.2223 -1.2920 -0.2928 33 1 6.5382 -2.3800 -2.4796 34 1 4.9372 -1.4652 -2.4336 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163067621.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:58:50 Heat of formation + Delta-G solvation = 42.506838 kcal Electronic energy + Delta-G solvation = -18304.061655 eV Core-core repulsion = 15455.962848 eV Total energy + Delta-G solvation = -2848.098807 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.09796 -38.95661 -37.22068 -35.41083 -35.07762 -34.11609 -30.79330 -29.69956 -28.30330 -24.56357 -23.56946 -23.19046 -22.65925 -20.65407 -19.15821 -18.31688 -17.90073 -17.33147 -16.62627 -16.18405 -15.86075 -15.20869 -15.05384 -14.90062 -14.63110 -14.45477 -13.69965 -13.39672 -13.22760 -12.75791 -12.51319 -12.40554 -12.35327 -12.25222 -12.08319 -11.82358 -11.72734 -11.45030 -11.25995 -11.17572 -10.75360 -9.46252 -9.01355 -8.28471 -8.24608 -6.26023 0.33927 0.71961 1.28471 1.32158 1.33909 1.42869 2.34021 2.81130 2.85232 3.07805 3.13660 3.24195 4.00689 4.12264 4.12797 4.15144 4.27913 4.49121 4.54913 4.74761 4.79334 4.81211 4.94621 5.05512 5.14072 5.22995 5.31726 5.45107 5.54893 5.66824 5.85378 5.98253 6.42840 6.59367 6.77348 6.86513 7.04552 7.36101 8.91393 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.016998 B = 0.007795 C = 0.006473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.810483 B = 3591.057782 C = 4324.630426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.010 3.990 3 Si 0.935 3.065 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.251 1.251 7 C -0.507 4.507 8 H 0.049 0.951 9 C 0.181 3.819 10 N -0.467 5.467 11 C 0.031 3.969 12 C -0.104 4.104 13 C -0.164 4.164 14 C -0.072 4.072 15 C -0.131 4.131 16 Cl -0.074 7.074 17 C 0.239 3.761 18 N -0.854 5.854 19 C 0.019 3.981 20 C -0.217 4.217 21 C -0.166 4.166 22 H 0.264 0.736 23 H -0.009 1.009 24 H 0.033 0.967 25 H 0.123 0.877 26 H 0.152 0.848 27 H 0.152 0.848 28 H 0.407 0.593 29 H 0.398 0.602 30 H 0.126 0.874 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.122 0.878 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.369 -8.340 3.418 15.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.187 4.187 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.175 1.175 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.056 3.944 10 N -0.186 5.186 11 C -0.067 4.067 12 C -0.124 4.124 13 C -0.185 4.185 14 C -0.091 4.091 15 C -0.164 4.164 16 Cl -0.046 7.046 17 C 0.130 3.870 18 N -0.392 5.392 19 C -0.089 4.089 20 C -0.256 4.256 21 C -0.204 4.204 22 H 0.072 0.928 23 H 0.009 0.991 24 H 0.051 0.949 25 H 0.141 0.859 26 H 0.170 0.830 27 H 0.170 0.830 28 H 0.238 0.762 29 H 0.227 0.773 30 H 0.143 0.857 31 H 0.097 0.903 32 H 0.135 0.865 33 H 0.140 0.860 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.826 -8.580 3.035 14.923 hybrid contribution -0.299 1.163 0.088 1.204 sum 11.528 -7.417 3.123 14.059 Atomic orbital electron populations 1.70044 1.07975 1.27680 1.53088 1.25717 0.95447 1.02614 0.94897 0.85903 0.79560 0.79547 0.79112 1.19132 1.21206 1.17458 1.21311 0.90953 0.93604 1.48686 0.93278 1.20069 0.94216 0.85313 0.94837 1.59066 1.16402 1.15375 1.27792 1.18177 1.01233 0.96423 0.90907 1.21663 0.98832 0.98906 0.93046 1.20951 1.02272 0.97049 0.98228 1.21031 0.94650 0.96716 0.96671 1.20355 1.04226 0.96690 0.95086 1.98293 1.64953 1.42976 1.98360 1.17515 0.90883 0.91704 0.86937 1.42520 1.50438 1.35876 1.10380 1.22760 0.87761 0.96579 1.01842 1.23574 1.01749 0.97443 1.02858 1.23113 1.03046 1.03545 0.90678 0.92752 0.99092 0.94864 0.85862 0.83014 0.83026 0.76235 0.77268 0.85651 0.90287 0.86532 0.85960 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.04 13.96 21.45 0.30 -58.74 16 2 C 0.01 0.59 5.47 84.65 0.46 1.06 16 3 Si 0.93 43.71 27.37 68.60 1.88 45.59 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 6 H -0.25 -10.90 6.69 99.48 0.67 -10.24 16 7 C -0.51 -28.52 9.47 25.60 0.24 -28.27 16 8 H 0.05 3.05 8.04 -2.91 -0.02 3.03 16 9 C 0.18 8.29 2.36 85.56 0.20 8.50 16 10 N -0.47 -18.24 3.80 -675.04 -2.57 -20.81 16 11 C 0.03 1.18 4.24 38.23 0.16 1.34 16 12 C -0.10 -3.49 8.51 22.39 0.19 -3.30 16 13 C -0.16 -4.66 10.04 22.28 0.22 -4.44 16 14 C -0.07 -2.05 9.82 22.30 0.22 -1.83 16 15 C -0.13 -4.32 6.33 22.42 0.14 -4.18 16 16 Cl -0.07 -2.14 27.59 -2.72 -0.08 -2.21 16 17 C 0.24 8.85 6.77 38.23 0.26 9.11 16 18 N -0.85 -30.16 9.04 -50.89 -0.46 -30.62 16 19 C 0.02 0.58 5.53 44.92 0.25 0.83 16 20 C -0.22 -6.12 9.56 30.60 0.29 -5.83 16 21 C -0.17 -4.63 9.92 30.60 0.30 -4.33 16 22 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 23 H -0.01 -0.40 6.20 -2.39 -0.01 -0.42 16 24 H 0.03 1.51 4.81 -2.39 -0.01 1.50 16 25 H 0.12 3.94 7.62 -2.91 -0.02 3.92 16 26 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 27 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 28 H 0.41 15.22 8.11 -92.71 -0.75 14.47 16 29 H 0.40 12.47 7.51 -92.71 -0.70 11.77 16 30 H 0.13 3.49 8.05 -2.39 -0.02 3.47 16 31 H 0.08 2.60 6.01 -2.39 -0.01 2.59 16 32 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.08 2.55 7.49 -2.39 -0.02 2.54 16 Total: -1.00 -64.56 295.24 1.67 -62.89 By element: Atomic # 1 Polarization: 35.60 SS G_CDS: -0.35 Total: 35.25 kcal Atomic # 6 Polarization: -34.29 SS G_CDS: 2.95 Total: -31.34 kcal Atomic # 7 Polarization: -107.45 SS G_CDS: -2.73 Total: -110.18 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.88 Total: 45.59 kcal Atomic # 17 Polarization: -2.14 SS G_CDS: -0.08 Total: -2.21 kcal Total: -64.56 1.67 -62.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163067621.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.392 kcal (2) G-P(sol) polarization free energy of solvation -64.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds