Wall clock time and date at job start Mon Mar 30 2020 08:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48502 * 109.46901 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47358 * 300.00210 * 3 2 1 6 6 H 1.48497 * 109.47040 * 60.00525 * 3 2 1 7 7 C 1.37874 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99897 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99843 * 359.97438 * 7 2 1 10 10 H 1.08992 * 109.50867 * 299.94380 * 9 7 2 11 11 C 1.53052 * 109.48367 * 179.89078 * 9 7 2 12 12 N 1.46961 * 109.36043 * 181.63066 * 11 9 7 13 13 C 1.39752 * 110.99734 * 183.18668 * 12 11 9 14 14 C 1.38881 * 120.08254 * 349.32121 * 13 12 11 15 15 C 1.38108 * 119.94008 * 179.97438 * 14 13 12 16 16 C 1.38294 * 120.09701 * 0.02562 * 15 14 13 17 17 C 1.38271 * 120.15156 * 359.97438 * 16 15 14 18 18 C 1.38214 * 120.06423 * 359.72429 * 17 16 15 19 19 Cl 1.73603 * 120.04706 * 180.29742 * 18 17 16 20 20 C 1.46956 * 110.87726 * 59.32367 * 12 11 9 21 21 C 1.53050 * 109.36755 * 300.67652 * 20 12 11 22 22 N 1.46956 * 109.48707 * 60.00266 * 9 7 2 23 23 H 0.97000 * 120.00329 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.48842 * 61.66868 * 11 9 7 25 25 H 1.08999 * 109.50901 * 301.60979 * 11 9 7 26 26 H 1.08009 * 120.02545 * 359.97345 * 14 13 12 27 27 H 1.08004 * 119.95643 * 179.97438 * 15 14 13 28 28 H 1.07998 * 119.92696 * 179.97438 * 16 15 14 29 29 H 1.08004 * 119.96446 * 180.02562 * 17 16 15 30 30 H 1.09002 * 109.48565 * 180.70987 * 20 12 11 31 31 H 1.09003 * 109.48843 * 60.64668 * 20 12 11 32 32 H 1.09005 * 109.48648 * 298.43738 * 21 20 12 33 33 H 1.08998 * 109.50906 * 178.38461 * 21 20 12 34 34 H 1.00903 * 111.00053 * 55.41831 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6253 -2.5581 0.8899 11 6 2.2453 -3.6627 -0.0039 12 7 1.5081 -4.9334 -0.0434 13 6 2.3821 -6.0217 0.0249 14 6 3.7506 -5.8250 -0.1072 15 6 4.6117 -6.9025 -0.0387 16 6 4.1132 -8.1770 0.1607 17 6 2.7515 -8.3774 0.2926 18 6 1.8843 -7.3029 0.2314 19 17 0.1754 -7.5540 0.4048 20 6 0.6627 -5.0114 -1.2429 21 6 -0.3316 -3.8478 -1.2396 22 7 0.4056 -2.5771 -1.2000 23 1 -0.4850 0.8400 0.0004 24 1 2.8542 -3.6234 0.8994 25 1 2.8894 -3.5885 -0.8801 26 1 4.1409 -4.8300 -0.2633 27 1 5.6759 -6.7498 -0.1417 28 1 4.7891 -9.0177 0.2133 29 1 2.3655 -9.3740 0.4486 30 1 0.1177 -5.9554 -1.2429 31 1 1.2886 -4.9524 -2.1334 32 1 -0.9754 -3.9221 -0.3631 33 1 -0.9407 -3.8870 -2.1426 34 1 0.9538 -2.4509 -2.0377 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211576494.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:02 Heat of formation + Delta-G solvation = 38.128123 kcal Electronic energy + Delta-G solvation = -18148.084604 eV Core-core repulsion = 15299.795921 eV Total energy + Delta-G solvation = -2848.288682 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.04430 -37.65487 -36.22227 -34.06957 -32.36196 -30.87427 -29.91442 -29.01225 -25.47566 -24.55350 -22.75661 -21.64473 -21.14129 -19.43080 -17.60551 -16.49328 -15.62491 -15.53723 -14.70738 -14.41111 -14.27911 -13.85891 -13.69315 -13.47970 -13.34562 -13.07270 -12.31544 -11.98534 -11.76171 -11.44341 -11.38403 -11.06209 -10.95962 -10.70266 -10.56372 -10.31551 -10.15445 -9.76697 -9.38929 -8.94779 -8.72382 -8.44561 -7.63899 -6.88154 -5.91107 -4.06864 1.25498 1.36387 2.36507 3.31140 3.39761 3.41854 3.66776 4.12454 4.47516 4.87150 4.98132 5.21472 5.25092 5.38569 5.47088 5.61810 5.62540 5.81889 5.88775 5.93914 6.12782 6.16572 6.23273 6.30767 6.34593 6.47615 6.66712 6.75764 6.80262 7.20298 7.56298 7.61666 7.86937 8.16752 8.53747 8.87387 9.07696 9.62449 11.13340 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.028612 B = 0.005645 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.370114 B = 4958.907643 C = 5697.607588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.085 3.915 3 Si 0.884 3.116 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.541 4.541 8 H 0.055 0.945 9 C 0.228 3.772 10 H 0.048 0.952 11 C 0.025 3.975 12 N -0.484 5.484 13 C 0.131 3.869 14 C -0.162 4.162 15 C -0.093 4.093 16 C -0.145 4.145 17 C -0.094 4.094 18 C -0.056 4.056 19 Cl -0.063 7.063 20 C 0.017 3.983 21 C 0.059 3.941 22 N -0.648 5.648 23 H 0.256 0.744 24 H 0.072 0.928 25 H 0.033 0.967 26 H 0.137 0.863 27 H 0.124 0.876 28 H 0.125 0.875 29 H 0.129 0.871 30 H 0.080 0.920 31 H 0.031 0.969 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.319 0.681 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.982 -15.015 -1.690 15.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.122 4.122 3 Si 0.712 3.288 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.581 4.581 8 H 0.073 0.927 9 C 0.120 3.880 10 H 0.066 0.934 11 C -0.103 4.103 12 N -0.198 5.198 13 C 0.031 3.969 14 C -0.183 4.183 15 C -0.112 4.112 16 C -0.164 4.164 17 C -0.113 4.113 18 C -0.085 4.085 19 Cl -0.034 7.034 20 C -0.110 4.110 21 C -0.072 4.072 22 N -0.275 5.275 23 H 0.066 0.934 24 H 0.091 0.909 25 H 0.051 0.949 26 H 0.155 0.845 27 H 0.142 0.858 28 H 0.143 0.857 29 H 0.147 0.853 30 H 0.098 0.902 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.718 -14.483 -0.995 14.986 hybrid contribution 1.587 0.217 -0.758 1.772 sum 5.305 -14.266 -1.753 15.321 Atomic orbital electron populations 1.70123 1.05683 1.25711 1.46276 1.24937 0.94618 0.98614 0.94068 0.86694 0.80183 0.84372 0.77550 1.19932 1.21045 1.21063 1.20893 0.92309 0.90005 1.54862 0.92711 1.19199 0.88617 0.89648 0.90575 0.93402 1.23347 0.98038 0.88722 1.00187 1.59292 1.20994 1.01752 1.37757 1.19024 0.91508 0.90433 0.95919 1.21537 0.92427 1.00525 1.03796 1.21089 0.99644 0.92408 0.98009 1.20938 0.94421 0.97294 1.03794 1.20888 0.92930 0.97615 0.99874 1.20625 0.85266 0.93648 1.09008 1.98336 1.12638 1.96598 1.95851 1.23169 0.96519 1.02999 0.88306 1.22114 0.95828 0.87821 1.01423 1.61036 1.32696 1.28474 1.05291 0.93391 0.90927 0.94860 0.84515 0.85785 0.85669 0.85298 0.90214 0.95108 0.91038 0.91880 0.86417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.13 12.77 55.43 0.71 -23.42 16 2 C 0.09 2.31 5.39 -17.82 -0.10 2.22 16 3 Si 0.88 20.79 29.54 -169.99 -5.02 15.77 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.54 -14.38 8.69 -34.44 -0.30 -14.68 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.23 5.55 2.46 -68.81 -0.17 5.38 16 10 H 0.05 1.34 8.14 -51.93 -0.42 0.91 16 11 C 0.03 0.51 3.54 -3.76 -0.01 0.50 16 12 N -0.48 -9.02 4.38 -170.91 -0.75 -9.76 16 13 C 0.13 2.18 5.40 -83.73 -0.45 1.73 16 14 C -0.16 -2.43 8.85 -39.39 -0.35 -2.78 16 15 C -0.09 -1.13 10.04 -39.61 -0.40 -1.53 16 16 C -0.15 -1.64 10.04 -39.55 -0.40 -2.04 16 17 C -0.09 -1.17 9.82 -39.58 -0.39 -1.56 16 18 C -0.06 -0.85 6.15 -39.31 -0.24 -1.09 16 19 Cl -0.06 -0.93 26.00 -51.86 -1.35 -2.28 16 20 C 0.02 0.30 5.24 -3.77 -0.02 0.28 16 21 C 0.06 1.15 6.72 -3.77 -0.03 1.13 16 22 N -0.65 -14.92 5.87 -107.81 -0.63 -15.56 16 23 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 24 H 0.07 1.49 7.70 -51.93 -0.40 1.09 16 25 H 0.03 0.67 7.09 -51.93 -0.37 0.30 16 26 H 0.14 2.08 5.89 -52.48 -0.31 1.77 16 27 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 28 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 30 H 0.08 1.31 5.48 -51.93 -0.28 1.02 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.32 7.18 8.79 -39.29 -0.35 6.83 16 LS Contribution 289.94 15.07 4.37 4.37 Total: -1.00 -28.37 289.94 -9.73 -38.10 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -4.21 Total: 5.22 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: -2.85 Total: -12.44 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.67 Total: -48.74 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.35 Total: -2.28 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.37 -9.73 -38.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211576494.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.232 kcal (2) G-P(sol) polarization free energy of solvation -28.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds