Wall clock time and date at job start Mon Mar 30 2020 08:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48502 * 109.46901 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47358 * 300.00210 * 3 2 1 6 6 H 1.48497 * 109.47040 * 60.00525 * 3 2 1 7 7 C 1.37874 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99897 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99843 * 359.97438 * 7 2 1 10 10 H 1.08992 * 109.50867 * 299.94380 * 9 7 2 11 11 C 1.53052 * 109.48367 * 179.89078 * 9 7 2 12 12 N 1.46961 * 109.36043 * 181.63066 * 11 9 7 13 13 C 1.39752 * 110.99734 * 183.18668 * 12 11 9 14 14 C 1.38881 * 120.08254 * 349.32121 * 13 12 11 15 15 C 1.38108 * 119.94008 * 179.97438 * 14 13 12 16 16 C 1.38294 * 120.09701 * 0.02562 * 15 14 13 17 17 C 1.38271 * 120.15156 * 359.97438 * 16 15 14 18 18 C 1.38214 * 120.06423 * 359.72429 * 17 16 15 19 19 Cl 1.73603 * 120.04706 * 180.29742 * 18 17 16 20 20 C 1.46956 * 110.87726 * 59.32367 * 12 11 9 21 21 C 1.53050 * 109.36755 * 300.67652 * 20 12 11 22 22 N 1.46956 * 109.48707 * 60.00266 * 9 7 2 23 23 H 0.97000 * 120.00329 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.48842 * 61.66868 * 11 9 7 25 25 H 1.08999 * 109.50901 * 301.60979 * 11 9 7 26 26 H 1.08009 * 120.02545 * 359.97345 * 14 13 12 27 27 H 1.08004 * 119.95643 * 179.97438 * 15 14 13 28 28 H 1.07998 * 119.92696 * 179.97438 * 16 15 14 29 29 H 1.08004 * 119.96446 * 180.02562 * 17 16 15 30 30 H 1.09002 * 109.48565 * 180.70987 * 20 12 11 31 31 H 1.09003 * 109.48843 * 60.64668 * 20 12 11 32 32 H 1.09005 * 109.48648 * 298.43738 * 21 20 12 33 33 H 1.08998 * 109.50906 * 178.38461 * 21 20 12 34 34 H 1.00903 * 111.00053 * 55.41831 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6253 -2.5581 0.8899 11 6 2.2453 -3.6627 -0.0039 12 7 1.5081 -4.9334 -0.0434 13 6 2.3821 -6.0217 0.0249 14 6 3.7506 -5.8250 -0.1072 15 6 4.6117 -6.9025 -0.0387 16 6 4.1132 -8.1770 0.1607 17 6 2.7515 -8.3774 0.2926 18 6 1.8843 -7.3029 0.2314 19 17 0.1754 -7.5540 0.4048 20 6 0.6627 -5.0114 -1.2429 21 6 -0.3316 -3.8478 -1.2396 22 7 0.4056 -2.5771 -1.2000 23 1 -0.4850 0.8400 0.0004 24 1 2.8542 -3.6234 0.8994 25 1 2.8894 -3.5885 -0.8801 26 1 4.1409 -4.8300 -0.2633 27 1 5.6759 -6.7498 -0.1417 28 1 4.7891 -9.0177 0.2133 29 1 2.3655 -9.3740 0.4486 30 1 0.1177 -5.9554 -1.2429 31 1 1.2886 -4.9524 -2.1334 32 1 -0.9754 -3.9221 -0.3631 33 1 -0.9407 -3.8870 -2.1426 34 1 0.9538 -2.4509 -2.0377 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211576494.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:01 Heat of formation + Delta-G solvation = 19.994621 kcal Electronic energy + Delta-G solvation = -18148.870931 eV Core-core repulsion = 15299.795921 eV Total energy + Delta-G solvation = -2849.075010 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.32525 -39.02732 -37.33862 -35.69154 -34.20617 -32.21667 -31.39741 -30.24691 -27.35718 -26.03945 -24.18178 -22.97088 -22.49284 -21.08190 -19.04347 -18.12145 -16.97712 -16.79225 -16.39185 -15.95668 -15.53029 -15.39890 -15.22793 -14.80537 -14.75165 -14.40442 -14.02861 -13.52825 -13.02143 -12.89743 -12.78411 -12.62623 -12.42459 -12.33402 -12.11373 -11.89298 -11.68831 -11.52809 -11.01682 -10.55268 -10.51077 -9.78441 -8.92772 -8.62866 -7.98401 -6.21032 0.21372 0.30679 1.25841 1.44481 1.46663 1.56866 2.44853 2.60569 2.84562 3.22854 3.82185 3.85250 4.03569 4.13428 4.19182 4.26299 4.37137 4.40582 4.47897 4.56045 4.63273 4.78022 4.87118 4.94510 5.12338 5.14697 5.27844 5.45994 5.48483 5.72718 5.77824 5.96947 6.18435 6.26134 6.59996 7.05094 7.09415 7.52297 9.05768 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.028612 B = 0.005645 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.370114 B = 4958.907643 C = 5697.607588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.036 3.964 3 Si 0.952 3.048 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.554 4.554 8 H 0.055 0.945 9 C 0.232 3.768 10 H 0.001 0.999 11 C 0.047 3.953 12 N -0.496 5.496 13 C 0.098 3.902 14 C -0.176 4.176 15 C -0.089 4.089 16 C -0.129 4.129 17 C -0.092 4.092 18 C -0.070 4.070 19 Cl -0.069 7.069 20 C 0.028 3.972 21 C 0.063 3.937 22 N -0.666 5.666 23 H 0.256 0.744 24 H 0.064 0.936 25 H 0.036 0.964 26 H 0.127 0.873 27 H 0.154 0.846 28 H 0.165 0.835 29 H 0.155 0.845 30 H 0.094 0.906 31 H 0.034 0.966 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.321 0.679 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.921 -16.850 -2.179 18.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.168 4.168 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.593 4.593 8 H 0.073 0.927 9 C 0.123 3.877 10 H 0.019 0.981 11 C -0.082 4.082 12 N -0.211 5.211 13 C 0.000 4.000 14 C -0.197 4.197 15 C -0.107 4.107 16 C -0.148 4.148 17 C -0.111 4.111 18 C -0.098 4.098 19 Cl -0.040 7.040 20 C -0.099 4.099 21 C -0.067 4.067 22 N -0.294 5.294 23 H 0.065 0.935 24 H 0.083 0.917 25 H 0.054 0.946 26 H 0.145 0.855 27 H 0.171 0.829 28 H 0.183 0.817 29 H 0.173 0.827 30 H 0.112 0.888 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.675 -16.346 -1.483 17.367 hybrid contribution 1.033 0.646 -0.588 1.353 sum 6.709 -15.700 -2.071 17.198 Atomic orbital electron populations 1.70262 1.07216 1.26409 1.47647 1.25688 0.95361 1.01959 0.93761 0.85632 0.79146 0.80088 0.77358 1.19108 1.20765 1.21007 1.21246 0.92529 0.91264 1.54283 0.92652 1.18893 0.88654 0.90747 0.89387 0.98097 1.22882 0.96727 0.88702 0.99845 1.59243 1.21737 1.01598 1.38564 1.19135 0.91963 0.90309 0.98608 1.21595 0.92226 1.01194 1.04725 1.21450 1.00784 0.91958 0.96530 1.21427 0.94426 0.98044 1.00918 1.21272 0.93234 0.97957 0.98631 1.20832 0.85447 0.93820 1.09738 1.98330 1.13271 1.96527 1.95917 1.23022 0.96019 1.02457 0.88392 1.22072 0.95873 0.87286 1.01492 1.60808 1.32796 1.31052 1.04714 0.93539 0.91717 0.94607 0.85548 0.82856 0.81708 0.82741 0.88790 0.94811 0.93099 0.89699 0.86181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.71 12.77 21.45 0.27 -51.43 16 2 C 0.04 2.01 5.39 84.65 0.46 2.46 16 3 Si 0.95 43.26 29.54 68.60 2.03 45.29 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 6 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 7 C -0.55 -30.16 8.69 25.60 0.22 -29.93 16 8 H 0.06 2.93 7.74 -2.91 -0.02 2.91 16 9 C 0.23 11.76 2.46 44.18 0.11 11.87 16 10 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 11 C 0.05 1.98 3.54 86.31 0.31 2.29 16 12 N -0.50 -18.74 4.38 -694.64 -3.04 -21.79 16 13 C 0.10 3.21 5.40 38.21 0.21 3.41 16 14 C -0.18 -5.07 8.85 22.39 0.20 -4.87 16 15 C -0.09 -1.87 10.04 22.25 0.22 -1.65 16 16 C -0.13 -2.34 10.04 22.29 0.22 -2.12 16 17 C -0.09 -1.97 9.82 22.27 0.22 -1.75 16 18 C -0.07 -1.98 6.15 22.44 0.14 -1.84 16 19 Cl -0.07 -1.98 26.00 -2.72 -0.07 -2.05 16 20 C 0.03 0.99 5.24 86.31 0.45 1.44 16 21 C 0.06 2.51 6.72 86.31 0.58 3.09 16 22 N -0.67 -31.64 5.87 -495.01 -2.91 -34.54 16 23 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 24 H 0.06 2.76 7.70 -2.39 -0.02 2.74 16 25 H 0.04 1.46 7.09 -2.39 -0.02 1.45 16 26 H 0.13 3.80 5.89 -2.91 -0.02 3.79 16 27 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 28 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 29 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 30 H 0.09 3.03 5.48 -2.39 -0.01 3.02 16 31 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.05 2.21 8.14 -2.38 -0.02 2.19 16 33 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 34 H 0.32 14.77 8.79 -89.69 -0.79 13.98 16 Total: -1.00 -62.83 289.94 -0.06 -62.89 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 0.33 Total: 19.23 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 3.33 Total: -17.59 kcal Atomic # 7 Polarization: -102.09 SS G_CDS: -5.67 Total: -107.76 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 17 Polarization: -1.98 SS G_CDS: -0.07 Total: -2.05 kcal Total: -62.83 -0.06 -62.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211576494.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.882 kcal (2) G-P(sol) polarization free energy of solvation -62.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds