Wall clock time and date at job start Mon Mar 30 2020 08:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 H 1.08991 * 109.48743 * 59.95797 * 9 7 2 11 11 C 1.53049 * 109.48606 * 180.02562 * 9 7 2 12 12 N 1.46961 * 109.36224 * 178.36752 * 11 9 7 13 13 C 1.39749 * 111.00184 * 176.80989 * 12 11 9 14 14 C 1.38885 * 120.07615 * 59.72649 * 13 12 11 15 15 C 1.38116 * 119.93818 * 179.72059 * 14 13 12 16 16 C 1.38296 * 120.08912 * 0.55339 * 15 14 13 17 17 C 1.38266 * 120.16282 * 359.72445 * 16 15 14 18 18 C 1.38212 * 120.05677 * 359.97438 * 17 16 15 19 19 Cl 1.73603 * 120.04509 * 180.02562 * 18 17 16 20 20 C 1.46956 * 110.88189 * 300.68353 * 12 11 9 21 21 C 1.53048 * 109.36800 * 59.31439 * 20 12 11 22 22 N 1.46954 * 109.48751 * 299.89034 * 9 7 2 23 23 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.49179 * 298.33302 * 11 9 7 25 25 H 1.09000 * 109.49344 * 58.37995 * 11 9 7 26 26 H 1.08002 * 120.02911 * 0.02562 * 14 13 12 27 27 H 1.07990 * 119.95769 * 180.28027 * 15 14 13 28 28 H 1.08009 * 119.91872 * 179.74144 * 16 15 14 29 29 H 1.07997 * 119.97314 * 180.02562 * 17 16 15 30 30 H 1.09000 * 109.49079 * 179.28683 * 20 12 11 31 31 H 1.09001 * 109.48332 * 299.32803 * 20 12 11 32 32 H 1.08997 * 109.48470 * 61.56942 * 21 20 12 33 33 H 1.08995 * 109.49304 * 181.61242 * 21 20 12 34 34 H 1.00896 * 111.00435 * 304.58123 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6235 -2.5567 -0.8897 11 6 2.2454 -3.6627 -0.0005 12 7 1.5083 -4.9335 0.0390 13 6 2.3821 -6.0218 -0.0325 14 6 3.3607 -6.1935 0.9380 15 6 4.2190 -7.2733 0.8679 16 6 4.1127 -8.1770 -0.1736 17 6 3.1437 -8.0066 -1.1450 18 6 2.2774 -6.9319 -1.0777 19 17 1.0604 -6.7186 -2.2972 20 6 0.6652 -5.0129 1.2400 21 6 -0.3290 -3.8493 1.2401 22 7 0.4085 -2.5789 1.2009 23 1 -0.4849 -0.8401 0.0004 24 1 2.8524 -3.6224 -0.9049 25 1 2.8912 -3.5892 0.8744 26 1 3.4471 -5.4861 1.7495 27 1 4.9771 -7.4096 1.6248 28 1 4.7881 -9.0181 -0.2280 29 1 3.0631 -8.7145 -1.9567 30 1 0.1202 -5.9569 1.2400 31 1 1.2929 -4.9554 2.1293 32 1 -0.9745 -3.9226 0.3649 33 1 -0.9363 -3.8899 2.1442 34 1 0.9587 -2.4538 2.0373 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211576581.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:05 Heat of formation + Delta-G solvation = 30.065413 kcal Electronic energy + Delta-G solvation = -18157.770817 eV Core-core repulsion = 15309.132509 eV Total energy + Delta-G solvation = -2848.638308 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.02510 -37.82024 -36.14788 -34.28191 -32.32691 -30.75522 -29.89041 -29.13884 -25.23476 -24.07687 -22.73922 -22.10618 -21.29618 -19.59723 -17.63840 -16.75341 -15.86236 -15.51859 -14.66333 -14.42550 -14.00355 -13.82694 -13.81827 -13.63085 -13.46590 -13.04470 -12.40121 -11.93130 -11.63895 -11.58782 -11.38233 -11.32520 -10.79517 -10.73689 -10.56316 -10.31599 -10.13451 -10.02535 -8.93238 -8.64036 -8.40425 -8.30399 -8.16966 -7.23392 -6.17309 -4.00775 1.15343 1.18651 2.38214 3.48053 3.51562 3.56945 3.67010 4.05015 4.61567 4.78984 4.88497 5.11084 5.19663 5.28642 5.42174 5.54345 5.58450 5.70521 5.82606 5.83717 6.02963 6.05143 6.17415 6.22448 6.31737 6.35642 6.60380 6.63790 6.69745 7.06128 7.45855 7.62186 8.01054 8.26737 8.60627 8.71143 9.05231 9.83263 11.22906 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.025763 B = 0.005552 C = 0.005358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.580958 B = 5042.051124 C = 5224.294931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.039 3.961 3 Si 1.066 2.934 4 H -0.290 1.290 5 H -0.285 1.285 6 H -0.291 1.291 7 C -0.618 4.618 8 H 0.046 0.954 9 C 0.213 3.787 10 H 0.040 0.960 11 C 0.045 3.955 12 N -0.500 5.500 13 C 0.111 3.889 14 C -0.139 4.139 15 C -0.110 4.110 16 C -0.120 4.120 17 C -0.111 4.111 18 C -0.017 4.017 19 Cl -0.054 7.054 20 C 0.029 3.971 21 C 0.057 3.943 22 N -0.670 5.670 23 H 0.291 0.709 24 H 0.068 0.932 25 H 0.026 0.974 26 H 0.126 0.874 27 H 0.124 0.876 28 H 0.128 0.872 29 H 0.132 0.868 30 H 0.066 0.934 31 H 0.028 0.972 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.325 0.675 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.604 -15.948 1.199 16.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.171 4.171 3 Si 0.895 3.105 4 H -0.217 1.217 5 H -0.211 1.211 6 H -0.218 1.218 7 C -0.658 4.658 8 H 0.064 0.936 9 C 0.105 3.895 10 H 0.058 0.942 11 C -0.082 4.082 12 N -0.222 5.222 13 C 0.015 3.985 14 C -0.159 4.159 15 C -0.129 4.129 16 C -0.139 4.139 17 C -0.131 4.131 18 C -0.045 4.045 19 Cl -0.025 7.025 20 C -0.099 4.099 21 C -0.074 4.074 22 N -0.299 5.299 23 H 0.104 0.896 24 H 0.086 0.914 25 H 0.044 0.956 26 H 0.144 0.856 27 H 0.142 0.858 28 H 0.146 0.854 29 H 0.150 0.850 30 H 0.084 0.916 31 H 0.046 0.954 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.399 -13.906 0.384 14.590 hybrid contribution 1.512 -2.394 0.902 2.972 sum 5.911 -16.299 1.286 17.386 Atomic orbital electron populations 1.70521 1.06833 1.32953 1.42028 1.25594 0.96590 1.01841 0.93095 0.83611 0.74703 0.75612 0.76538 1.21672 1.21111 1.21780 1.21760 0.93441 0.91105 1.59453 0.93571 1.19331 0.89225 0.91235 0.89680 0.94181 1.23025 0.97201 0.88014 0.99960 1.59921 1.21419 1.01096 1.39736 1.18849 0.93453 0.93024 0.93131 1.21721 0.96109 0.98631 0.99486 1.21094 0.98928 0.94428 0.98414 1.21049 0.98469 0.99800 0.94554 1.21002 0.95144 0.96944 0.99966 1.20978 0.94299 0.96763 0.92448 1.98366 1.54091 1.97055 1.53007 1.22923 0.96336 1.01369 0.89311 1.22095 0.95830 0.88001 1.01456 1.61245 1.33095 1.29340 1.06204 0.89602 0.91379 0.95586 0.85636 0.85767 0.85387 0.85005 0.91564 0.95356 0.91010 0.91755 0.85712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.69 13.51 55.43 0.75 -25.94 16 2 C 0.04 1.10 5.39 -17.82 -0.10 1.01 16 3 Si 1.07 25.07 29.90 -169.99 -5.08 19.98 16 4 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.62 -17.01 8.69 -34.44 -0.30 -17.31 16 8 H 0.05 1.27 7.74 -52.48 -0.41 0.87 16 9 C 0.21 5.24 2.07 -68.81 -0.14 5.10 16 10 H 0.04 1.12 8.01 -51.93 -0.42 0.70 16 11 C 0.05 0.96 4.52 -3.77 -0.02 0.94 16 12 N -0.50 -9.20 4.08 -170.92 -0.70 -9.89 16 13 C 0.11 1.81 4.72 -83.73 -0.40 1.41 16 14 C -0.14 -2.00 8.64 -39.39 -0.34 -2.34 16 15 C -0.11 -1.28 10.04 -39.60 -0.40 -1.68 16 16 C -0.12 -1.30 10.04 -39.55 -0.40 -1.69 16 17 C -0.11 -1.35 9.82 -39.58 -0.39 -1.74 16 18 C -0.02 -0.26 6.34 -39.31 -0.25 -0.51 16 19 Cl -0.05 -0.84 28.44 -51.86 -1.47 -2.32 16 20 C 0.03 0.49 5.35 -3.77 -0.02 0.47 16 21 C 0.06 1.07 6.72 -3.77 -0.03 1.05 16 22 N -0.67 -15.21 5.13 -107.82 -0.55 -15.76 16 23 H 0.29 8.79 6.40 -40.82 -0.26 8.53 16 24 H 0.07 1.51 8.13 -51.93 -0.42 1.09 16 25 H 0.03 0.55 7.23 -51.93 -0.38 0.17 16 26 H 0.13 1.80 7.06 -52.49 -0.37 1.43 16 27 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 28 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 29 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 30 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 31 H 0.03 0.47 7.46 -51.93 -0.39 0.08 16 32 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.33 7.30 8.79 -39.29 -0.35 6.96 16 LS Contribution 294.13 15.07 4.43 4.43 Total: -1.00 -29.52 294.13 -9.71 -39.23 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -4.32 Total: 5.55 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -2.77 Total: -15.29 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: -0.50 Total: -51.59 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -5.08 Total: 19.98 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.47 Total: -2.32 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.52 -9.71 -39.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211576581.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.293 kcal (2) G-P(sol) polarization free energy of solvation -29.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds