Wall clock time and date at job start Mon Mar 30 2020 08:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 H 1.08991 * 109.48743 * 59.95797 * 9 7 2 11 11 C 1.53049 * 109.48606 * 180.02562 * 9 7 2 12 12 N 1.46961 * 109.36224 * 178.36752 * 11 9 7 13 13 C 1.39749 * 111.00184 * 176.80989 * 12 11 9 14 14 C 1.38885 * 120.07615 * 59.72649 * 13 12 11 15 15 C 1.38116 * 119.93818 * 179.72059 * 14 13 12 16 16 C 1.38296 * 120.08912 * 0.55339 * 15 14 13 17 17 C 1.38266 * 120.16282 * 359.72445 * 16 15 14 18 18 C 1.38212 * 120.05677 * 359.97438 * 17 16 15 19 19 Cl 1.73603 * 120.04509 * 180.02562 * 18 17 16 20 20 C 1.46956 * 110.88189 * 300.68353 * 12 11 9 21 21 C 1.53048 * 109.36800 * 59.31439 * 20 12 11 22 22 N 1.46954 * 109.48751 * 299.89034 * 9 7 2 23 23 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.49179 * 298.33302 * 11 9 7 25 25 H 1.09000 * 109.49344 * 58.37995 * 11 9 7 26 26 H 1.08002 * 120.02911 * 0.02562 * 14 13 12 27 27 H 1.07990 * 119.95769 * 180.28027 * 15 14 13 28 28 H 1.08009 * 119.91872 * 179.74144 * 16 15 14 29 29 H 1.07997 * 119.97314 * 180.02562 * 17 16 15 30 30 H 1.09000 * 109.49079 * 179.28683 * 20 12 11 31 31 H 1.09001 * 109.48332 * 299.32803 * 20 12 11 32 32 H 1.08997 * 109.48470 * 61.56942 * 21 20 12 33 33 H 1.08995 * 109.49304 * 181.61242 * 21 20 12 34 34 H 1.00896 * 111.00435 * 304.58123 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6235 -2.5567 -0.8897 11 6 2.2454 -3.6627 -0.0005 12 7 1.5083 -4.9335 0.0390 13 6 2.3821 -6.0218 -0.0325 14 6 3.3607 -6.1935 0.9380 15 6 4.2190 -7.2733 0.8679 16 6 4.1127 -8.1770 -0.1736 17 6 3.1437 -8.0066 -1.1450 18 6 2.2774 -6.9319 -1.0777 19 17 1.0604 -6.7186 -2.2972 20 6 0.6652 -5.0129 1.2400 21 6 -0.3290 -3.8493 1.2401 22 7 0.4085 -2.5789 1.2009 23 1 -0.4849 -0.8401 0.0004 24 1 2.8524 -3.6224 -0.9049 25 1 2.8912 -3.5892 0.8744 26 1 3.4471 -5.4861 1.7495 27 1 4.9771 -7.4096 1.6248 28 1 4.7881 -9.0181 -0.2280 29 1 3.0631 -8.7145 -1.9567 30 1 0.1202 -5.9569 1.2400 31 1 1.2929 -4.9554 2.1293 32 1 -0.9745 -3.9226 0.3649 33 1 -0.9363 -3.8899 2.1442 34 1 0.9587 -2.4538 2.0373 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211576581.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:04 Heat of formation + Delta-G solvation = 11.419506 kcal Electronic energy + Delta-G solvation = -18158.579364 eV Core-core repulsion = 15309.132509 eV Total energy + Delta-G solvation = -2849.446855 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.28983 -39.20420 -37.28746 -35.93334 -34.17064 -31.75668 -31.69036 -30.36624 -27.04266 -25.75258 -23.87180 -23.67441 -22.67240 -21.21355 -19.26162 -18.20931 -17.14151 -16.65540 -16.21152 -15.79830 -15.58406 -15.50314 -15.42605 -15.01078 -14.79623 -14.36762 -13.95038 -13.38723 -13.33168 -12.88698 -12.63819 -12.55734 -12.46559 -12.34931 -12.05031 -11.98884 -11.88374 -11.68175 -10.59609 -10.46479 -9.93002 -9.64874 -9.57995 -9.02785 -8.37194 -6.25763 0.12147 0.18447 1.27199 1.57334 1.66062 1.82992 2.56676 2.61058 2.74855 3.26872 3.72842 3.80683 4.01603 4.06552 4.11741 4.15998 4.27823 4.33294 4.41025 4.48923 4.51735 4.70361 4.77229 4.84661 5.02894 5.16224 5.20015 5.31317 5.37963 5.70627 5.77195 6.01154 6.19809 6.30062 6.60841 6.77597 6.89396 7.66685 8.97312 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.025763 B = 0.005552 C = 0.005358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.580958 B = 5042.051124 C = 5224.294931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.009 4.009 3 Si 1.114 2.886 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.630 4.630 8 H 0.041 0.959 9 C 0.218 3.782 10 H -0.003 1.003 11 C 0.067 3.933 12 N -0.507 5.507 13 C 0.077 3.923 14 C -0.150 4.150 15 C -0.103 4.103 16 C -0.105 4.105 17 C -0.109 4.109 18 C -0.035 4.035 19 Cl -0.071 7.071 20 C 0.038 3.962 21 C 0.060 3.940 22 N -0.684 5.684 23 H 0.278 0.722 24 H 0.049 0.951 25 H 0.026 0.974 26 H 0.120 0.880 27 H 0.156 0.844 28 H 0.170 0.830 29 H 0.156 0.844 30 H 0.083 0.917 31 H 0.038 0.962 32 H 0.053 0.947 33 H 0.090 0.910 34 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.565 -17.855 2.133 19.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.213 4.213 3 Si 0.937 3.063 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.669 4.669 8 H 0.060 0.940 9 C 0.110 3.890 10 H 0.015 0.985 11 C -0.061 4.061 12 N -0.229 5.229 13 C -0.018 4.018 14 C -0.170 4.170 15 C -0.122 4.122 16 C -0.123 4.123 17 C -0.128 4.128 18 C -0.063 4.063 19 Cl -0.042 7.042 20 C -0.090 4.090 21 C -0.070 4.070 22 N -0.313 5.313 23 H 0.089 0.911 24 H 0.068 0.932 25 H 0.045 0.955 26 H 0.138 0.862 27 H 0.174 0.826 28 H 0.187 0.813 29 H 0.173 0.827 30 H 0.102 0.898 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.108 0.892 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.365 -15.849 1.325 17.131 hybrid contribution 0.949 -1.961 0.609 2.262 sum 7.314 -17.810 1.935 19.351 Atomic orbital electron populations 1.70641 1.07812 1.32164 1.44615 1.26982 0.96630 1.05506 0.92138 0.82977 0.74024 0.71853 0.77412 1.20061 1.21253 1.20223 1.22106 0.93442 0.92655 1.58649 0.94044 1.19006 0.89220 0.91885 0.88906 0.98515 1.22548 0.95947 0.88687 0.98962 1.59733 1.21972 1.00644 1.40517 1.18931 0.94729 0.93107 0.94990 1.21756 0.96494 0.99802 0.98975 1.21477 0.98406 0.93092 0.99182 1.21544 0.97689 1.00136 0.92891 1.21359 0.94390 0.96118 1.00952 1.21203 0.95037 0.97963 0.92057 1.98356 1.54995 1.97218 1.53655 1.22816 0.95842 1.01004 0.89332 1.22101 0.95874 0.87164 1.01851 1.60963 1.32899 1.32157 1.05278 0.91065 0.93217 0.95546 0.86212 0.82634 0.81288 0.82684 0.89830 0.94428 0.92823 0.89212 0.85542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.56 13.51 21.45 0.29 -56.27 16 2 C -0.01 -0.49 5.39 84.65 0.46 -0.03 16 3 Si 1.11 50.75 29.90 68.60 2.05 52.80 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 6 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 7 C -0.63 -35.55 8.69 25.60 0.22 -35.32 16 8 H 0.04 2.32 7.74 -2.91 -0.02 2.30 16 9 C 0.22 11.19 2.07 44.18 0.09 11.28 16 10 H 0.00 -0.18 8.01 -2.39 -0.02 -0.20 16 11 C 0.07 2.90 4.52 86.31 0.39 3.29 16 12 N -0.51 -18.83 4.08 -694.66 -2.83 -21.66 16 13 C 0.08 2.46 4.72 38.21 0.18 2.64 16 14 C -0.15 -4.03 8.64 22.40 0.19 -3.83 16 15 C -0.10 -2.00 10.04 22.25 0.22 -1.78 16 16 C -0.10 -1.77 10.04 22.29 0.22 -1.55 16 17 C -0.11 -2.32 9.82 22.27 0.22 -2.10 16 18 C -0.03 -1.01 6.34 22.44 0.14 -0.87 16 19 Cl -0.07 -2.21 28.44 -2.72 -0.08 -2.29 16 20 C 0.04 1.28 5.35 86.31 0.46 1.74 16 21 C 0.06 2.29 6.72 86.31 0.58 2.87 16 22 N -0.68 -31.88 5.13 -495.04 -2.54 -34.42 16 23 H 0.28 17.48 6.40 -92.71 -0.59 16.89 16 24 H 0.05 2.29 8.13 -2.39 -0.02 2.27 16 25 H 0.03 1.13 7.23 -2.39 -0.02 1.11 16 26 H 0.12 3.28 7.06 -2.91 -0.02 3.26 16 27 H 0.16 2.05 8.06 -2.92 -0.02 2.03 16 28 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 29 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 30 H 0.08 2.53 8.13 -2.39 -0.02 2.51 16 31 H 0.04 1.20 7.46 -2.39 -0.02 1.18 16 32 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.09 2.92 8.14 -2.39 -0.02 2.91 16 34 H 0.33 14.90 8.79 -89.70 -0.79 14.11 16 Total: -1.00 -66.28 294.13 0.77 -65.51 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 0.49 Total: 20.01 kcal Atomic # 6 Polarization: -27.05 SS G_CDS: 3.38 Total: -23.67 kcal Atomic # 7 Polarization: -107.27 SS G_CDS: -5.08 Total: -112.35 kcal Atomic # 14 Polarization: 50.75 SS G_CDS: 2.05 Total: 52.80 kcal Atomic # 17 Polarization: -2.21 SS G_CDS: -0.08 Total: -2.29 kcal Total: -66.28 0.77 -65.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211576581.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.927 kcal (2) G-P(sol) polarization free energy of solvation -66.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds