Wall clock time and date at job start Mon Mar 30 2020 07:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00082 * 2 1 4 4 H 1.48505 * 109.46933 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47039 * 299.99952 * 3 2 1 6 6 H 1.48499 * 109.47199 * 60.00205 * 3 2 1 7 7 C 1.37881 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00112 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99704 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.50809 * 60.05424 * 9 7 2 11 11 C 1.53059 * 109.48368 * 180.10554 * 9 7 2 12 12 N 1.46961 * 109.35852 * 178.36828 * 11 9 7 13 13 C 1.39675 * 110.99418 * 176.81327 * 12 11 9 14 14 C 1.38950 * 120.06449 * 247.47720 * 13 12 11 15 15 C 1.38085 * 119.94578 * 179.72379 * 14 13 12 16 16 C 1.38291 * 120.09207 * 0.55200 * 15 14 13 17 17 C 1.38386 * 120.13167 * 359.72718 * 16 15 14 18 18 Cl 1.73601 * 119.97186 * 180.02562 * 17 16 15 19 19 C 1.38242 * 120.05037 * 359.97438 * 17 16 15 20 20 C 1.46955 * 110.88185 * 300.67791 * 12 11 9 21 21 C 1.53049 * 109.36348 * 59.32326 * 20 12 11 22 22 N 1.46955 * 109.36716 * 301.59809 * 21 20 12 23 23 H 0.97007 * 119.99701 * 0.02562 * 1 2 3 24 24 H 1.08992 * 109.48796 * 58.40506 * 11 9 7 25 25 H 1.08994 * 109.48920 * 298.33201 * 11 9 7 26 26 H 1.07995 * 120.02509 * 359.97438 * 14 13 12 27 27 H 1.08004 * 119.95257 * 180.25546 * 15 14 13 28 28 H 1.08001 * 119.93316 * 179.74254 * 16 15 14 29 29 H 1.07996 * 120.04551 * 179.97438 * 19 17 16 30 30 H 1.08994 * 109.48889 * 299.35751 * 20 12 11 31 31 H 1.09001 * 109.50200 * 179.30182 * 20 12 11 32 32 H 1.09002 * 109.49130 * 181.62942 * 21 20 12 33 33 H 1.09008 * 109.48964 * 61.56515 * 21 20 12 34 34 H 1.00901 * 111.00068 * 183.18488 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 0.6251 -2.5581 -0.8900 11 6 2.2452 -3.6628 0.0038 12 7 1.5079 -4.9334 0.0433 13 6 2.3814 -6.0212 -0.0250 14 6 2.3834 -6.8430 -1.1454 15 6 3.2520 -7.9144 -1.2129 16 6 4.1118 -8.1772 -0.1620 17 6 4.1087 -7.3644 0.9580 18 17 5.1902 -7.6977 2.2744 19 6 3.2458 -6.2867 1.0289 20 6 0.6625 -5.0114 1.2428 21 6 -0.3317 -3.8478 1.2395 22 7 0.4055 -2.5771 1.2000 23 1 -0.4850 0.8401 -0.0004 24 1 2.8889 -3.5885 0.8802 25 1 2.8539 -3.6235 -0.8994 26 1 1.7091 -6.6416 -1.9645 27 1 3.2566 -8.5508 -2.0855 28 1 4.7871 -9.0183 -0.2157 29 1 3.2432 -5.6527 1.9031 30 1 1.2883 -4.9525 2.1332 31 1 0.1175 -5.9554 1.2431 32 1 -0.9405 -3.8871 2.1428 33 1 -0.9755 -3.9221 0.3630 34 1 -0.2255 -1.7913 1.2494 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211576773.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:31 Heat of formation + Delta-G solvation = 29.394709 kcal Electronic energy + Delta-G solvation = -17869.172238 eV Core-core repulsion = 15020.504846 eV Total energy + Delta-G solvation = -2848.667392 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.88787 -37.64757 -36.36046 -34.12243 -32.25627 -30.69366 -30.02206 -29.19964 -25.62171 -24.40562 -22.69443 -21.92844 -21.21084 -18.76266 -17.51374 -16.44686 -15.70494 -15.43856 -15.06972 -14.53696 -14.24264 -13.93846 -13.75659 -13.56402 -13.11905 -12.97478 -12.36028 -12.01298 -11.79409 -11.50000 -11.37324 -11.01190 -10.98977 -10.93116 -10.80544 -10.45852 -10.18588 -9.55480 -9.22676 -8.82224 -8.63943 -8.52919 -8.05112 -6.93673 -6.14448 -4.17428 1.21617 1.27226 2.13067 3.26826 3.35051 3.39287 3.65065 4.19437 4.40931 4.85564 5.01166 5.11203 5.28840 5.37867 5.48697 5.64817 5.73666 5.78420 5.97733 6.00046 6.18631 6.24580 6.33037 6.37652 6.48512 6.53871 6.64518 6.71975 6.86125 7.28216 7.53841 7.76058 7.86297 8.11982 8.59339 8.92963 9.04686 9.50777 10.96332 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.025324 B = 0.004876 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.406794 B = 5741.064861 C = 6072.594080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.900 3.100 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.506 4.506 8 H 0.061 0.939 9 C 0.220 3.780 10 H 0.006 0.994 11 C 0.075 3.925 12 N -0.509 5.509 13 C 0.120 3.880 14 C -0.097 4.097 15 C -0.104 4.104 16 C -0.126 4.126 17 C -0.024 4.024 18 Cl -0.081 7.081 19 C -0.142 4.142 20 C 0.067 3.933 21 C 0.056 3.944 22 N -0.686 5.686 23 H 0.264 0.736 24 H 0.036 0.964 25 H 0.066 0.934 26 H 0.134 0.866 27 H 0.132 0.868 28 H 0.129 0.871 29 H 0.132 0.868 30 H 0.039 0.961 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.023 0.977 34 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.494 -14.763 0.400 15.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.728 3.272 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.545 4.545 8 H 0.079 0.921 9 C 0.112 3.888 10 H 0.024 0.976 11 C -0.051 4.051 12 N -0.231 5.231 13 C 0.025 3.975 14 C -0.116 4.116 15 C -0.123 4.123 16 C -0.145 4.145 17 C -0.052 4.052 18 Cl -0.052 7.052 19 C -0.163 4.163 20 C -0.060 4.060 21 C -0.075 4.075 22 N -0.324 5.324 23 H 0.074 0.926 24 H 0.054 0.946 25 H 0.084 0.916 26 H 0.152 0.848 27 H 0.149 0.851 28 H 0.147 0.853 29 H 0.149 0.851 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.041 0.959 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 4.614 -14.860 0.515 15.569 hybrid contribution 0.352 1.040 0.202 1.116 sum 4.966 -13.820 0.717 14.703 Atomic orbital electron populations 1.69679 1.06046 1.27018 1.51225 1.24966 0.94902 0.99350 0.94121 0.86412 0.80066 0.83190 0.77541 1.19739 1.21043 1.20908 1.21120 0.93133 0.89945 1.50350 0.92120 1.19046 0.90417 0.91000 0.88338 0.97592 1.22459 0.96356 0.86438 0.99818 1.60060 1.21233 1.01545 1.40241 1.19035 0.92231 0.93288 0.92927 1.21228 0.98720 0.93757 0.97914 1.21019 0.95460 0.97646 0.98149 1.20980 1.00777 0.99964 0.92747 1.20806 0.95593 0.98090 0.90665 1.98357 1.63796 1.95009 1.48047 1.21746 0.96211 0.97255 1.01061 1.22194 0.95273 0.98589 0.89984 1.21860 0.94454 0.92136 0.99073 1.61010 1.26105 1.02696 1.42609 0.92608 0.94611 0.91600 0.84798 0.85054 0.85332 0.85055 0.94255 0.91729 0.92159 0.95869 0.81056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.84 11.49 55.43 0.64 -24.21 16 2 C 0.07 1.84 5.35 -17.82 -0.10 1.75 16 3 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -13.70 8.76 -34.44 -0.30 -14.00 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.22 5.50 2.55 -68.80 -0.18 5.33 16 10 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 11 C 0.07 1.60 4.62 -3.76 -0.02 1.59 16 12 N -0.51 -9.48 4.68 -170.96 -0.80 -10.28 16 13 C 0.12 1.93 4.72 -83.79 -0.40 1.54 16 14 C -0.10 -1.33 9.97 -39.37 -0.39 -1.72 16 15 C -0.10 -1.17 10.04 -39.62 -0.40 -1.57 16 16 C -0.13 -1.47 9.83 -39.51 -0.39 -1.86 16 17 C -0.02 -0.33 6.32 -39.53 -0.25 -0.58 16 18 Cl -0.08 -1.01 28.95 -51.86 -1.50 -2.52 16 19 C -0.14 -2.17 8.46 -39.35 -0.33 -2.51 16 20 C 0.07 1.19 5.26 -3.77 -0.02 1.17 16 21 C 0.06 1.10 6.72 -3.77 -0.03 1.08 16 22 N -0.69 -16.37 6.53 -107.81 -0.70 -17.07 16 23 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 24 H 0.04 0.79 7.68 -51.93 -0.40 0.39 16 25 H 0.07 1.40 8.13 -51.93 -0.42 0.98 16 26 H 0.13 1.74 8.06 -52.49 -0.42 1.31 16 27 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 28 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 29 H 0.13 2.11 7.06 -52.49 -0.37 1.74 16 30 H 0.04 0.71 7.05 -51.93 -0.37 0.34 16 31 H 0.06 1.02 8.13 -51.93 -0.42 0.60 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 34 H 0.37 9.43 6.71 -39.29 -0.26 9.16 16 LS Contribution 294.51 15.07 4.44 4.44 Total: -1.00 -27.42 294.51 -10.06 -37.48 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -4.32 Total: 6.00 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -2.79 Total: -9.80 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: -0.87 Total: -51.55 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.50 Total: -2.52 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -27.42 -10.06 -37.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211576773.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.880 kcal (2) G-P(sol) polarization free energy of solvation -27.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds