Wall clock time and date at job start Mon Mar 30 2020 07:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00082 * 2 1 4 4 H 1.48505 * 109.46933 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47039 * 299.99952 * 3 2 1 6 6 H 1.48499 * 109.47199 * 60.00205 * 3 2 1 7 7 C 1.37881 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00112 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99704 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.50809 * 60.05424 * 9 7 2 11 11 C 1.53059 * 109.48368 * 180.10554 * 9 7 2 12 12 N 1.46961 * 109.35852 * 178.36828 * 11 9 7 13 13 C 1.39675 * 110.99418 * 176.81327 * 12 11 9 14 14 C 1.38950 * 120.06449 * 247.47720 * 13 12 11 15 15 C 1.38085 * 119.94578 * 179.72379 * 14 13 12 16 16 C 1.38291 * 120.09207 * 0.55200 * 15 14 13 17 17 C 1.38386 * 120.13167 * 359.72718 * 16 15 14 18 18 Cl 1.73601 * 119.97186 * 180.02562 * 17 16 15 19 19 C 1.38242 * 120.05037 * 359.97438 * 17 16 15 20 20 C 1.46955 * 110.88185 * 300.67791 * 12 11 9 21 21 C 1.53049 * 109.36348 * 59.32326 * 20 12 11 22 22 N 1.46955 * 109.36716 * 301.59809 * 21 20 12 23 23 H 0.97007 * 119.99701 * 0.02562 * 1 2 3 24 24 H 1.08992 * 109.48796 * 58.40506 * 11 9 7 25 25 H 1.08994 * 109.48920 * 298.33201 * 11 9 7 26 26 H 1.07995 * 120.02509 * 359.97438 * 14 13 12 27 27 H 1.08004 * 119.95257 * 180.25546 * 15 14 13 28 28 H 1.08001 * 119.93316 * 179.74254 * 16 15 14 29 29 H 1.07996 * 120.04551 * 179.97438 * 19 17 16 30 30 H 1.08994 * 109.48889 * 299.35751 * 20 12 11 31 31 H 1.09001 * 109.50200 * 179.30182 * 20 12 11 32 32 H 1.09002 * 109.49130 * 181.62942 * 21 20 12 33 33 H 1.09008 * 109.48964 * 61.56515 * 21 20 12 34 34 H 1.00901 * 111.00068 * 183.18488 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 0.6251 -2.5581 -0.8900 11 6 2.2452 -3.6628 0.0038 12 7 1.5079 -4.9334 0.0433 13 6 2.3814 -6.0212 -0.0250 14 6 2.3834 -6.8430 -1.1454 15 6 3.2520 -7.9144 -1.2129 16 6 4.1118 -8.1772 -0.1620 17 6 4.1087 -7.3644 0.9580 18 17 5.1902 -7.6977 2.2744 19 6 3.2458 -6.2867 1.0289 20 6 0.6625 -5.0114 1.2428 21 6 -0.3317 -3.8478 1.2395 22 7 0.4055 -2.5771 1.2000 23 1 -0.4850 0.8401 -0.0004 24 1 2.8889 -3.5885 0.8802 25 1 2.8539 -3.6235 -0.8994 26 1 1.7091 -6.6416 -1.9645 27 1 3.2566 -8.5508 -2.0855 28 1 4.7871 -9.0183 -0.2157 29 1 3.2432 -5.6527 1.9031 30 1 1.2883 -4.9525 2.1332 31 1 0.1175 -5.9554 1.2431 32 1 -0.9405 -3.8871 2.1428 33 1 -0.9755 -3.9221 0.3630 34 1 -0.2255 -1.7913 1.2494 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211576773.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:30 Heat of formation + Delta-G solvation = 12.239792 kcal Electronic energy + Delta-G solvation = -17869.916131 eV Core-core repulsion = 15020.504846 eV Total energy + Delta-G solvation = -2849.411285 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.14868 -39.03483 -37.43303 -35.78131 -34.08585 -31.86147 -31.70110 -30.45682 -27.47619 -26.02171 -23.87955 -23.46777 -22.53543 -20.43701 -19.00181 -18.04509 -17.20504 -16.69794 -16.51390 -16.11193 -15.81051 -15.36777 -15.29126 -14.85727 -14.60547 -14.29477 -13.96680 -13.80423 -12.87579 -12.81577 -12.76817 -12.69465 -12.55801 -12.36857 -12.21814 -11.98768 -11.91029 -11.33898 -11.15120 -10.68871 -9.89220 -9.66899 -9.49243 -8.85591 -8.20157 -6.31340 0.16265 0.22464 1.11367 1.41626 1.43981 1.55408 2.40570 2.60833 2.85858 3.06921 3.85687 3.91191 3.99622 4.15596 4.22958 4.31482 4.39263 4.45348 4.56391 4.57468 4.70738 4.74616 4.81901 4.97887 5.06911 5.19088 5.35798 5.36395 5.46385 5.69657 5.76628 5.84134 6.15281 6.42648 6.59059 6.91826 7.05724 7.40663 8.89723 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.025324 B = 0.004876 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.406794 B = 5741.064861 C = 6072.594080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.024 3.976 3 Si 0.965 3.035 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.531 4.531 8 H 0.055 0.945 9 C 0.223 3.777 10 H -0.033 1.033 11 C 0.092 3.908 12 N -0.512 5.512 13 C 0.090 3.910 14 C -0.101 4.101 15 C -0.089 4.089 16 C -0.115 4.115 17 C -0.033 4.033 18 Cl -0.075 7.075 19 C -0.153 4.153 20 C 0.072 3.928 21 C 0.054 3.946 22 N -0.694 5.694 23 H 0.267 0.733 24 H 0.024 0.976 25 H 0.061 0.939 26 H 0.139 0.861 27 H 0.171 0.829 28 H 0.159 0.841 29 H 0.115 0.885 30 H 0.036 0.964 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.013 0.987 34 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.511 -16.526 0.044 17.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.175 4.175 3 Si 0.790 3.210 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.570 4.570 8 H 0.074 0.926 9 C 0.114 3.886 10 H -0.016 1.016 11 C -0.034 4.034 12 N -0.233 5.233 13 C -0.004 4.004 14 C -0.120 4.120 15 C -0.107 4.107 16 C -0.133 4.133 17 C -0.060 4.060 18 Cl -0.046 7.046 19 C -0.174 4.174 20 C -0.055 4.055 21 C -0.076 4.076 22 N -0.330 5.330 23 H 0.076 0.924 24 H 0.042 0.958 25 H 0.080 0.920 26 H 0.157 0.843 27 H 0.189 0.811 28 H 0.177 0.823 29 H 0.133 0.867 30 H 0.054 0.946 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.031 0.969 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 5.638 -16.656 0.163 17.585 hybrid contribution 0.041 1.478 0.304 1.510 sum 5.679 -15.178 0.467 16.212 Atomic orbital electron populations 1.69787 1.07198 1.27858 1.51387 1.25721 0.95738 1.02477 0.93603 0.85413 0.78845 0.79103 0.77639 1.19409 1.20449 1.20467 1.21417 0.93146 0.91430 1.51029 0.92642 1.18898 0.90546 0.91990 0.87153 1.01582 1.22070 0.95205 0.87201 0.98966 1.59956 1.21687 1.01150 1.40520 1.19086 0.93262 0.93471 0.94560 1.21397 0.99390 0.94139 0.97055 1.21419 0.93592 0.96648 0.99062 1.21389 1.00482 0.99848 0.91610 1.20928 0.95459 0.97968 0.91626 1.98359 1.63407 1.94871 1.47952 1.21586 0.97233 0.98092 1.00447 1.22168 0.94845 0.98693 0.89755 1.21996 0.94892 0.91054 0.99651 1.60978 1.26418 1.03843 1.41721 0.92405 0.95803 0.92045 0.84323 0.81138 0.82337 0.86743 0.94606 0.89048 0.89876 0.96925 0.82718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.05 11.49 21.45 0.25 -51.81 16 2 C 0.02 1.32 5.35 84.66 0.45 1.77 16 3 Si 0.96 43.46 29.54 68.60 2.03 45.48 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.53 -29.63 8.76 25.60 0.22 -29.41 16 8 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 9 C 0.22 11.59 2.55 44.18 0.11 11.70 16 10 H -0.03 -1.96 8.14 -2.39 -0.02 -1.97 16 11 C 0.09 4.08 4.62 86.31 0.40 4.48 16 12 N -0.51 -19.19 4.68 -694.80 -3.25 -22.44 16 13 C 0.09 2.84 4.72 38.21 0.18 3.02 16 14 C -0.10 -2.55 9.97 22.40 0.22 -2.33 16 15 C -0.09 -1.66 10.04 22.25 0.22 -1.44 16 16 C -0.11 -2.26 9.83 22.32 0.22 -2.04 16 17 C -0.03 -0.82 6.32 22.31 0.14 -0.68 16 18 Cl -0.07 -1.75 28.95 -2.72 -0.08 -1.83 16 19 C -0.15 -4.59 8.46 22.42 0.19 -4.40 16 20 C 0.07 2.56 5.26 86.31 0.45 3.01 16 21 C 0.05 2.17 6.72 86.31 0.58 2.75 16 22 N -0.69 -34.12 6.53 -494.99 -3.23 -37.35 16 23 H 0.27 14.21 8.31 -92.70 -0.77 13.44 16 24 H 0.02 1.09 7.68 -2.39 -0.02 1.08 16 25 H 0.06 2.71 8.13 -2.39 -0.02 2.69 16 26 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 27 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 28 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 29 H 0.11 3.75 7.06 -2.91 -0.02 3.73 16 30 H 0.04 1.30 7.05 -2.39 -0.02 1.28 16 31 H 0.09 2.76 8.13 -2.39 -0.02 2.74 16 32 H 0.08 2.90 8.14 -2.39 -0.02 2.89 16 33 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 34 H 0.35 18.75 6.71 -89.69 -0.60 18.15 16 Total: -1.00 -60.52 294.51 -0.39 -60.91 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.50 Total: 20.56 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: 3.40 Total: -13.53 kcal Atomic # 7 Polarization: -105.37 SS G_CDS: -6.24 Total: -111.60 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 17 Polarization: -1.75 SS G_CDS: -0.08 Total: -1.83 kcal Total: -60.52 -0.39 -60.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211576773.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.151 kcal (2) G-P(sol) polarization free energy of solvation -60.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds