Wall clock time and date at job start Mon Mar 30 2020 08:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09005 * 109.48659 * 60.23912 * 9 7 2 11 11 C 1.53058 * 109.48888 * 180.27944 * 9 7 2 12 12 N 1.46953 * 109.36184 * 178.37396 * 11 9 7 13 13 C 1.39739 * 110.99814 * 176.81389 * 12 11 9 14 14 C 1.38904 * 120.06277 * 359.72190 * 13 12 11 15 15 C 1.38108 * 119.93656 * 179.70359 * 14 13 12 16 16 C 1.38376 * 120.06464 * 0.59722 * 15 14 13 17 17 Cl 1.73601 * 119.94056 * 179.70315 * 16 15 14 18 18 C 1.38382 * 120.12305 * 359.67629 * 16 15 14 19 19 C 1.38106 * 120.06014 * 0.02579 * 18 16 15 20 20 C 1.46955 * 110.88097 * 300.67764 * 12 11 9 21 21 C 1.53044 * 109.36384 * 59.32330 * 20 12 11 22 22 N 1.46955 * 109.49271 * 300.17225 * 9 7 2 23 23 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.48408 * 298.33539 * 11 9 7 25 25 H 1.08997 * 109.48642 * 58.38316 * 11 9 7 26 26 H 1.08002 * 120.02739 * 359.97366 * 14 13 12 27 27 H 1.08002 * 119.96649 * 180.31980 * 15 14 13 28 28 H 1.08001 * 119.96769 * 180.02562 * 18 16 15 29 29 H 1.08002 * 120.03278 * 179.97438 * 19 18 16 30 30 H 1.09005 * 109.49175 * 179.29427 * 20 12 11 31 31 H 1.09005 * 109.48907 * 299.33476 * 20 12 11 32 32 H 1.09000 * 109.49163 * 61.56648 * 21 20 12 33 33 H 1.09009 * 109.48842 * 181.60954 * 21 20 12 34 34 H 1.00898 * 110.99459 * 304.57867 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6237 -2.5608 -0.8839 11 6 2.2455 -3.6627 0.0105 12 7 1.5083 -4.9332 0.0556 13 6 2.3821 -6.0217 -0.0109 14 6 3.7512 -5.8098 -0.1114 15 6 4.6129 -6.8875 -0.1708 16 6 4.1127 -8.1774 -0.1428 17 17 5.1982 -9.5296 -0.2254 18 6 2.7488 -8.3914 -0.0485 19 6 1.8829 -7.3175 0.0174 20 6 0.6654 -5.0073 1.2570 21 6 -0.3288 -3.8438 1.2519 22 7 0.4082 -2.5732 1.2068 23 1 -0.4850 0.8400 0.0004 24 1 2.8524 -3.6263 -0.8942 25 1 2.8913 -3.5852 0.8851 26 1 4.1418 -4.8032 -0.1386 27 1 5.6779 -6.7233 -0.2436 28 1 2.3611 -9.3992 -0.0264 29 1 0.8185 -7.4851 0.0906 30 1 0.1204 -5.9513 1.2613 31 1 1.2931 -4.9458 2.1461 32 1 -0.9745 -3.9209 0.3771 33 1 -0.9362 -3.8804 2.1564 34 1 0.9581 -2.4442 2.0428 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211576948.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:10 Heat of formation + Delta-G solvation = 34.145131 kcal Electronic energy + Delta-G solvation = -17800.562075 eV Core-core repulsion = 14952.100677 eV Total energy + Delta-G solvation = -2848.461398 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.10295 -37.82248 -36.31981 -33.98352 -32.40466 -31.31138 -29.96285 -28.83819 -25.57377 -24.57747 -22.98881 -21.57192 -21.07064 -19.54011 -17.69313 -16.62018 -15.69115 -15.45348 -14.76266 -14.46437 -14.36823 -13.88642 -13.61622 -13.45873 -13.31517 -13.19134 -12.55665 -12.09454 -11.93207 -11.54554 -11.33006 -11.09491 -10.99744 -10.81411 -10.66949 -10.57681 -10.22847 -9.82178 -9.39113 -9.04645 -8.99082 -8.48455 -7.57677 -6.96672 -5.95407 -4.11253 1.26092 1.34150 2.19375 3.28908 3.37757 3.39923 3.62642 4.12046 4.44588 4.80967 4.90279 5.14832 5.32891 5.37412 5.42596 5.53092 5.58324 5.75944 5.81979 5.97867 5.99527 6.07359 6.18700 6.22315 6.29771 6.37933 6.58991 6.65831 6.73420 7.15731 7.50873 7.55786 7.82860 8.11113 8.47430 8.80367 9.02595 9.58466 11.09122 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.033831 B = 0.004374 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.452066 B = 6400.187778 C = 7101.475878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.085 3.915 3 Si 0.885 3.115 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.227 3.773 10 H 0.048 0.952 11 C 0.023 3.977 12 N -0.486 5.486 13 C 0.133 3.867 14 C -0.163 4.163 15 C -0.082 4.082 16 C -0.073 4.073 17 Cl -0.087 7.087 18 C -0.086 4.086 19 C -0.139 4.139 20 C 0.023 3.977 21 C 0.056 3.944 22 N -0.648 5.648 23 H 0.257 0.743 24 H 0.075 0.925 25 H 0.035 0.965 26 H 0.139 0.861 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.131 0.869 30 H 0.071 0.929 31 H 0.036 0.964 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.320 0.680 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.852 -14.592 1.808 15.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.122 4.122 3 Si 0.712 3.288 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.582 4.582 8 H 0.074 0.926 9 C 0.119 3.881 10 H 0.066 0.934 11 C -0.105 4.105 12 N -0.200 5.200 13 C 0.032 3.968 14 C -0.184 4.184 15 C -0.101 4.101 16 C -0.101 4.101 17 Cl -0.059 7.059 18 C -0.105 4.105 19 C -0.159 4.159 20 C -0.104 4.104 21 C -0.075 4.075 22 N -0.275 5.275 23 H 0.067 0.933 24 H 0.093 0.907 25 H 0.054 0.946 26 H 0.157 0.843 27 H 0.147 0.853 28 H 0.147 0.853 29 H 0.149 0.851 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.836 -14.148 1.124 14.701 hybrid contribution 1.784 0.099 0.745 1.935 sum 5.619 -14.049 1.869 15.246 Atomic orbital electron populations 1.70113 1.05705 1.25796 1.46196 1.24933 0.94631 0.98666 0.93988 0.86685 0.80210 0.84277 0.77585 1.19886 1.21027 1.21017 1.20895 0.92366 0.89972 1.54968 0.92635 1.19221 0.88652 0.89766 0.90499 0.93381 1.23374 0.98093 0.88574 1.00478 1.59206 1.21341 1.02298 1.37107 1.19377 0.90843 0.91796 0.94735 1.21422 0.92221 0.99711 1.05082 1.20876 1.00182 0.90334 0.98722 1.20714 0.90774 0.88167 1.10441 1.98335 1.64694 1.45706 1.97149 1.20822 0.90987 0.99419 0.99307 1.20744 0.99873 0.90489 1.04837 1.23103 0.96452 1.02090 0.88751 1.22163 0.95864 0.87912 1.01553 1.61041 1.32808 1.28306 1.05391 0.93346 0.90671 0.94633 0.84319 0.85302 0.85265 0.85079 0.91043 0.94616 0.91008 0.91701 0.86287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.73 12.77 55.43 0.71 -23.02 16 2 C 0.09 2.28 5.39 -17.82 -0.10 2.19 16 3 Si 0.88 20.52 29.54 -169.99 -5.02 15.50 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.54 -14.16 8.69 -34.44 -0.30 -14.46 16 8 H 0.06 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.23 5.37 2.46 -68.80 -0.17 5.20 16 10 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 11 C 0.02 0.45 3.51 -3.77 -0.01 0.43 16 12 N -0.49 -8.55 4.76 -170.94 -0.81 -9.37 16 13 C 0.13 2.08 5.64 -83.76 -0.47 1.61 16 14 C -0.16 -2.43 8.82 -39.38 -0.35 -2.78 16 15 C -0.08 -1.08 9.82 -39.58 -0.39 -1.47 16 16 C -0.07 -0.94 6.32 -39.48 -0.25 -1.19 16 17 Cl -0.09 -1.01 28.95 -51.86 -1.50 -2.51 16 18 C -0.09 -1.06 9.82 -39.58 -0.39 -1.45 16 19 C -0.14 -1.89 9.19 -39.38 -0.36 -2.25 16 20 C 0.02 0.38 5.37 -3.77 -0.02 0.36 16 21 C 0.06 1.02 6.72 -3.77 -0.03 1.00 16 22 N -0.65 -14.44 5.87 -107.81 -0.63 -15.08 16 23 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 24 H 0.07 1.48 7.16 -51.93 -0.37 1.11 16 25 H 0.04 0.70 7.60 -51.93 -0.39 0.30 16 26 H 0.14 2.09 5.81 -52.49 -0.30 1.78 16 27 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 28 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 29 H 0.13 1.61 7.19 -52.49 -0.38 1.23 16 30 H 0.07 0.99 6.82 -51.93 -0.35 0.64 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.06 1.05 8.14 -51.92 -0.42 0.62 16 34 H 0.32 6.98 8.79 -39.29 -0.35 6.64 16 LS Contribution 293.04 15.07 4.42 4.42 Total: -1.00 -27.40 293.04 -9.90 -37.30 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -4.23 Total: 5.57 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -2.83 Total: -12.82 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: -0.74 Total: -47.46 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.50 Total: -2.51 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.40 -9.90 -37.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211576948.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.447 kcal (2) G-P(sol) polarization free energy of solvation -27.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds