Wall clock time and date at job start Mon Mar 30 2020 08:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09005 * 109.48659 * 60.23912 * 9 7 2 11 11 C 1.53058 * 109.48888 * 180.27944 * 9 7 2 12 12 N 1.46953 * 109.36184 * 178.37396 * 11 9 7 13 13 C 1.39739 * 110.99814 * 176.81389 * 12 11 9 14 14 C 1.38904 * 120.06277 * 359.72190 * 13 12 11 15 15 C 1.38108 * 119.93656 * 179.70359 * 14 13 12 16 16 C 1.38376 * 120.06464 * 0.59722 * 15 14 13 17 17 Cl 1.73601 * 119.94056 * 179.70315 * 16 15 14 18 18 C 1.38382 * 120.12305 * 359.67629 * 16 15 14 19 19 C 1.38106 * 120.06014 * 0.02579 * 18 16 15 20 20 C 1.46955 * 110.88097 * 300.67764 * 12 11 9 21 21 C 1.53044 * 109.36384 * 59.32330 * 20 12 11 22 22 N 1.46955 * 109.49271 * 300.17225 * 9 7 2 23 23 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.48408 * 298.33539 * 11 9 7 25 25 H 1.08997 * 109.48642 * 58.38316 * 11 9 7 26 26 H 1.08002 * 120.02739 * 359.97366 * 14 13 12 27 27 H 1.08002 * 119.96649 * 180.31980 * 15 14 13 28 28 H 1.08001 * 119.96769 * 180.02562 * 18 16 15 29 29 H 1.08002 * 120.03278 * 179.97438 * 19 18 16 30 30 H 1.09005 * 109.49175 * 179.29427 * 20 12 11 31 31 H 1.09005 * 109.48907 * 299.33476 * 20 12 11 32 32 H 1.09000 * 109.49163 * 61.56648 * 21 20 12 33 33 H 1.09009 * 109.48842 * 181.60954 * 21 20 12 34 34 H 1.00898 * 110.99459 * 304.57867 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6237 -2.5608 -0.8839 11 6 2.2455 -3.6627 0.0105 12 7 1.5083 -4.9332 0.0556 13 6 2.3821 -6.0217 -0.0109 14 6 3.7512 -5.8098 -0.1114 15 6 4.6129 -6.8875 -0.1708 16 6 4.1127 -8.1774 -0.1428 17 17 5.1982 -9.5296 -0.2254 18 6 2.7488 -8.3914 -0.0485 19 6 1.8829 -7.3175 0.0174 20 6 0.6654 -5.0073 1.2570 21 6 -0.3288 -3.8438 1.2519 22 7 0.4082 -2.5732 1.2068 23 1 -0.4850 0.8400 0.0004 24 1 2.8524 -3.6263 -0.8942 25 1 2.8913 -3.5852 0.8851 26 1 4.1418 -4.8032 -0.1386 27 1 5.6779 -6.7233 -0.2436 28 1 2.3611 -9.3992 -0.0264 29 1 0.8185 -7.4851 0.0906 30 1 0.1204 -5.9513 1.2613 31 1 1.2931 -4.9458 2.1461 32 1 -0.9745 -3.9209 0.3771 33 1 -0.9362 -3.8804 2.1564 34 1 0.9581 -2.4442 2.0428 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211576948.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:10 Heat of formation + Delta-G solvation = 17.102477 kcal Electronic energy + Delta-G solvation = -17801.301100 eV Core-core repulsion = 14952.100677 eV Total energy + Delta-G solvation = -2849.200423 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.35231 -39.11301 -37.36571 -35.54926 -34.16156 -32.56721 -31.47797 -30.05345 -27.37584 -26.02858 -24.37401 -22.84175 -22.43408 -21.10667 -19.06065 -18.22558 -17.03900 -16.71605 -16.37807 -15.96980 -15.64927 -15.44085 -15.09108 -14.78882 -14.55134 -14.35137 -14.05188 -13.71886 -13.14011 -12.86092 -12.82661 -12.55388 -12.46345 -12.36379 -12.21711 -11.92700 -11.71150 -11.63196 -10.99481 -10.55888 -10.52623 -10.05246 -8.80993 -8.62857 -7.98910 -6.21018 0.17708 0.30206 1.20408 1.44367 1.47199 1.56872 2.44100 2.53907 2.88205 3.22823 3.74996 3.85242 3.92728 4.14861 4.18424 4.27982 4.32879 4.39613 4.47542 4.55316 4.64377 4.77798 4.92899 4.96236 5.06367 5.15781 5.17142 5.26631 5.48972 5.63400 5.73861 5.99972 6.18945 6.27409 6.60459 7.06359 7.09401 7.52379 9.05142 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.033831 B = 0.004374 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.452066 B = 6400.187778 C = 7101.475878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.038 3.962 3 Si 0.949 3.051 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.556 4.556 8 H 0.054 0.946 9 C 0.231 3.769 10 H 0.004 0.996 11 C 0.043 3.957 12 N -0.497 5.497 13 C 0.109 3.891 14 C -0.175 4.175 15 C -0.083 4.083 16 C -0.074 4.074 17 Cl -0.073 7.073 18 C -0.080 4.080 19 C -0.136 4.136 20 C 0.031 3.969 21 C 0.059 3.941 22 N -0.669 5.669 23 H 0.256 0.744 24 H 0.067 0.933 25 H 0.035 0.965 26 H 0.129 0.871 27 H 0.145 0.855 28 H 0.156 0.844 29 H 0.146 0.854 30 H 0.101 0.899 31 H 0.038 0.962 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.321 0.679 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.689 -16.372 2.393 17.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.166 4.166 3 Si 0.775 3.225 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.595 4.595 8 H 0.072 0.928 9 C 0.123 3.877 10 H 0.022 0.978 11 C -0.086 4.086 12 N -0.211 5.211 13 C 0.010 3.990 14 C -0.196 4.196 15 C -0.102 4.102 16 C -0.102 4.102 17 Cl -0.044 7.044 18 C -0.100 4.100 19 C -0.156 4.156 20 C -0.096 4.096 21 C -0.072 4.072 22 N -0.297 5.297 23 H 0.065 0.935 24 H 0.086 0.914 25 H 0.053 0.947 26 H 0.147 0.853 27 H 0.163 0.837 28 H 0.174 0.826 29 H 0.164 0.836 30 H 0.119 0.881 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.691 -15.956 1.709 16.719 hybrid contribution 1.559 0.512 0.549 1.730 sum 6.250 -15.445 2.258 16.814 Atomic orbital electron populations 1.70243 1.07123 1.26412 1.47624 1.25651 0.95354 1.01845 0.93769 0.85670 0.79151 0.80251 0.77379 1.19236 1.20980 1.20782 1.21263 0.92546 0.91401 1.54313 0.92767 1.18901 0.88694 0.90652 0.89496 0.97816 1.22918 0.96826 0.88777 1.00049 1.59196 1.21866 1.01820 1.38234 1.19483 0.90922 0.91926 0.96693 1.21417 0.92393 0.99920 1.05900 1.21032 1.00835 0.90174 0.98197 1.20884 0.91419 0.88481 1.09402 1.98346 1.64258 1.44772 1.97020 1.21112 0.90616 1.00336 0.97888 1.20913 1.00902 0.89703 1.04106 1.23022 0.95852 1.02243 0.88439 1.22152 0.95940 0.87194 1.01883 1.60787 1.32866 1.31384 1.04685 0.93519 0.91421 0.94700 0.85293 0.83729 0.82591 0.83583 0.88078 0.94339 0.92729 0.89357 0.86166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.61 12.77 21.45 0.27 -50.33 16 2 C 0.04 2.07 5.39 84.65 0.46 2.52 16 3 Si 0.95 42.71 29.54 68.60 2.03 44.74 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.56 -29.72 8.69 25.60 0.22 -29.49 16 8 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 9 C 0.23 11.32 2.46 44.18 0.11 11.43 16 10 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16 11 C 0.04 1.73 3.51 86.31 0.30 2.03 16 12 N -0.50 -17.28 4.76 -694.73 -3.30 -20.58 16 13 C 0.11 3.28 5.64 38.20 0.22 3.49 16 14 C -0.18 -5.07 8.82 22.40 0.20 -4.87 16 15 C -0.08 -2.04 9.82 22.27 0.22 -1.83 16 16 C -0.07 -1.70 6.32 22.34 0.14 -1.56 16 17 Cl -0.07 -1.47 28.95 -2.72 -0.08 -1.54 16 18 C -0.08 -1.73 9.82 22.27 0.22 -1.51 16 19 C -0.14 -3.34 9.19 22.40 0.21 -3.13 16 20 C 0.03 0.96 5.37 86.31 0.46 1.43 16 21 C 0.06 2.12 6.72 86.31 0.58 2.70 16 22 N -0.67 -30.42 5.87 -494.99 -2.90 -33.32 16 23 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 24 H 0.07 2.76 7.16 -2.39 -0.02 2.74 16 25 H 0.03 1.39 7.60 -2.39 -0.02 1.37 16 26 H 0.13 3.91 5.81 -2.91 -0.02 3.89 16 27 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 28 H 0.16 2.51 8.06 -2.91 -0.02 2.48 16 29 H 0.15 3.11 7.19 -2.91 -0.02 3.08 16 30 H 0.10 2.52 6.82 -2.38 -0.02 2.51 16 31 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.05 2.14 8.14 -2.39 -0.02 2.13 16 33 H 0.09 2.74 8.14 -2.38 -0.02 2.72 16 34 H 0.32 14.21 8.79 -89.70 -0.79 13.42 16 Total: -1.00 -59.43 293.04 -0.33 -59.76 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.33 Total: 20.08 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: 3.33 Total: -18.79 kcal Atomic # 7 Polarization: -98.30 SS G_CDS: -5.93 Total: -104.24 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -0.08 Total: -1.54 kcal Total: -59.43 -0.33 -59.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211576948.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.865 kcal (2) G-P(sol) polarization free energy of solvation -59.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds