Wall clock time and date at job start Mon Mar 30 2020 07:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99652 * 2 1 4 4 H 1.48502 * 109.47026 * 269.99972 * 3 2 1 5 5 H 1.48500 * 109.47427 * 30.00103 * 3 2 1 6 6 H 1.48496 * 109.47126 * 150.00303 * 3 2 1 7 7 C 1.37875 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99952 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00002 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.50769 * 299.94210 * 9 7 2 11 11 C 1.53054 * 109.49110 * 59.99608 * 9 7 2 12 12 N 1.46957 * 109.38294 * 178.38119 * 11 9 7 13 13 C 1.46955 * 110.87690 * 300.67084 * 12 11 9 14 14 C 1.53058 * 109.36866 * 59.32327 * 13 12 11 15 15 N 1.46952 * 109.35718 * 301.59790 * 14 13 12 16 16 C 1.39756 * 110.99636 * 183.18866 * 15 14 13 17 17 C 1.38876 * 120.07763 * 247.89140 * 16 15 14 18 18 C 1.38116 * 119.93682 * 179.69810 * 17 16 15 19 19 C 1.38295 * 120.09644 * 0.57696 * 18 17 16 20 20 C 1.38269 * 120.15120 * 359.71968 * 19 18 17 21 21 C 1.38215 * 120.06744 * 359.97438 * 20 19 18 22 22 Cl 1.73599 * 120.04932 * 179.97438 * 21 20 19 23 23 H 0.96998 * 120.00082 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.48607 * 58.40250 * 11 9 7 25 25 H 1.08996 * 109.48649 * 298.35899 * 11 9 7 26 26 H 1.00892 * 110.99935 * 176.80269 * 12 11 9 27 27 H 1.09006 * 109.48527 * 179.28773 * 13 12 11 28 28 H 1.09001 * 109.49001 * 299.32609 * 13 12 11 29 29 H 1.08994 * 109.48852 * 61.56164 * 14 13 12 30 30 H 1.08993 * 109.48856 * 181.63033 * 14 13 12 31 31 H 1.08000 * 120.02986 * 359.97217 * 17 16 15 32 32 H 1.08000 * 119.95561 * 180.27223 * 18 17 16 33 33 H 1.07997 * 119.92218 * 179.74331 * 19 18 17 34 34 H 1.08005 * 119.96705 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6246 -2.5578 0.8906 11 6 0.3714 -2.5810 -1.2493 12 7 -0.3326 -3.8708 -1.2666 13 6 0.6218 -4.9883 -1.2689 14 6 1.5015 -4.9071 -0.0190 15 7 2.2054 -3.6172 -0.0018 16 6 3.0747 -3.5357 1.0894 17 6 2.8153 -2.6427 2.1209 18 6 3.6730 -2.5690 3.2009 19 6 4.7960 -3.3745 3.2508 20 6 5.0614 -4.2606 2.2231 21 6 4.2040 -4.3443 1.1422 22 17 4.5380 -5.4565 -0.1482 23 1 -0.4850 0.8400 0.0004 24 1 0.9951 -2.4950 -2.1391 25 1 -0.3563 -1.7697 -1.2354 26 1 -0.9602 -3.9297 -2.0544 27 1 0.0765 -5.9322 -1.2690 28 1 1.2479 -4.9300 -2.1592 29 1 0.8779 -4.9930 0.8708 30 1 2.2292 -5.7184 -0.0332 31 1 1.9412 -2.0097 2.0806 32 1 3.4691 -1.8778 4.0053 33 1 5.4671 -3.3116 4.0947 34 1 5.9391 -4.8886 2.2653 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211577040.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:51 Heat of formation + Delta-G solvation = 39.322334 kcal Electronic energy + Delta-G solvation = -18705.646101 eV Core-core repulsion = 15857.409204 eV Total energy + Delta-G solvation = -2848.236898 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.64094 -37.31209 -35.86337 -33.80133 -33.13164 -30.33485 -29.55199 -28.81668 -25.82467 -24.04589 -22.71179 -21.27103 -21.02952 -18.78699 -17.27697 -16.32052 -15.59123 -15.19571 -14.85626 -14.43985 -13.90572 -13.72476 -13.64008 -13.19685 -12.99396 -12.76604 -12.44382 -11.95156 -11.39427 -11.11238 -11.05410 -10.88493 -10.81680 -10.72612 -10.35651 -10.27568 -10.09510 -9.61666 -9.16727 -8.91656 -8.48747 -8.19478 -7.64952 -7.02745 -6.17049 -4.20802 1.77808 1.93346 2.74331 3.23967 3.31185 3.35844 4.21294 4.30789 4.68220 4.98846 5.21173 5.34888 5.52189 5.60702 5.74913 5.86916 5.88201 6.04856 6.08625 6.31602 6.40837 6.44781 6.65516 6.72564 6.74839 6.86435 7.04234 7.22072 7.37216 7.46735 7.66586 7.77167 8.03551 8.06298 8.20931 8.37968 8.85333 9.42516 10.88708 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.016257 B = 0.009776 C = 0.006963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.941843 B = 2863.418018 C = 4020.350834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.065 3.935 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.509 4.509 8 H 0.065 0.935 9 C 0.219 3.781 10 H 0.022 0.978 11 C 0.066 3.934 12 N -0.697 5.697 13 C 0.063 3.937 14 C 0.058 3.942 15 N -0.488 5.488 16 C 0.147 3.853 17 C -0.119 4.119 18 C -0.109 4.109 19 C -0.147 4.147 20 C -0.109 4.109 21 C -0.061 4.061 22 Cl -0.081 7.081 23 H 0.264 0.736 24 H 0.014 0.986 25 H 0.111 0.889 26 H 0.328 0.672 27 H 0.066 0.934 28 H 0.030 0.970 29 H 0.038 0.962 30 H 0.078 0.922 31 H 0.159 0.841 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.478 -7.912 2.554 9.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.138 4.138 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.547 4.547 8 H 0.083 0.917 9 C 0.113 3.887 10 H 0.039 0.961 11 C -0.063 4.063 12 N -0.328 5.328 13 C -0.067 4.067 14 C -0.068 4.068 15 N -0.204 5.204 16 C 0.047 3.953 17 C -0.140 4.140 18 C -0.129 4.129 19 C -0.166 4.166 20 C -0.129 4.129 21 C -0.090 4.090 22 Cl -0.052 7.052 23 H 0.074 0.926 24 H 0.033 0.967 25 H 0.129 0.871 26 H 0.144 0.856 27 H 0.084 0.916 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.096 0.904 31 H 0.176 0.824 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.459 -7.876 2.613 9.420 hybrid contribution 0.499 0.939 -0.567 1.205 sum 4.957 -6.937 2.045 8.768 Atomic orbital electron populations 1.69867 1.05794 1.26987 1.49767 1.24901 0.94881 0.99168 0.94842 0.86508 0.79929 0.82907 0.78315 1.20585 1.21132 1.19656 1.21111 0.93496 0.89275 1.50865 0.91664 1.19499 0.88196 0.86638 0.94357 0.96082 1.22323 0.97313 0.89325 0.97332 1.60735 1.20321 1.03764 1.47933 1.21880 0.93651 0.94490 0.96713 1.22219 0.95609 0.91404 0.97550 1.59380 1.20540 1.04361 1.36102 1.18697 0.92985 0.94227 0.89351 1.21965 1.01859 0.99212 0.90916 1.21111 0.94768 0.98685 0.98288 1.20840 0.98761 0.98180 0.98831 1.20690 0.98842 1.00087 0.93242 1.20613 0.97580 0.98596 0.92252 1.98290 1.94552 1.61596 1.50752 0.92585 0.96717 0.87118 0.85638 0.91593 0.95188 0.94396 0.90416 0.82404 0.86340 0.86404 0.86066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.64 11.34 55.43 0.63 -23.01 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 3 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.51 -13.18 6.05 -34.44 -0.21 -13.39 16 8 H 0.07 1.77 7.07 -52.49 -0.37 1.40 16 9 C 0.22 5.28 1.41 -68.78 -0.10 5.18 16 10 H 0.02 0.57 7.05 -51.93 -0.37 0.21 16 11 C 0.07 1.53 5.75 -3.77 -0.02 1.51 16 12 N -0.70 -13.71 6.90 -113.63 -0.78 -14.50 16 13 C 0.06 1.12 6.72 -3.76 -0.03 1.09 16 14 C 0.06 1.11 5.25 -3.77 -0.02 1.09 16 15 N -0.49 -10.59 4.19 -164.66 -0.69 -11.28 16 16 C 0.15 3.05 4.67 -83.73 -0.39 2.66 16 17 C -0.12 -2.44 7.76 -39.39 -0.31 -2.74 16 18 C -0.11 -1.89 10.04 -39.61 -0.40 -2.28 16 19 C -0.15 -2.26 10.04 -39.55 -0.40 -2.66 16 20 C -0.11 -1.75 9.82 -39.58 -0.39 -2.14 16 21 C -0.06 -1.13 6.15 -39.31 -0.24 -1.37 16 22 Cl -0.08 -1.36 26.09 -51.86 -1.35 -2.71 16 23 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 24 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.11 2.82 6.12 -51.93 -0.32 2.51 16 26 H 0.33 5.62 8.90 -39.30 -0.35 5.27 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.37 5.60 -51.93 -0.29 1.08 16 31 H 0.16 3.62 5.14 -52.49 -0.27 3.35 16 32 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 33 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 34 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 283.27 15.07 4.27 4.27 Total: -1.00 -26.81 283.27 -9.60 -36.41 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -4.06 Total: 6.73 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -2.59 Total: -11.47 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -0.85 Total: -48.79 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -1.35 Total: -2.71 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -26.81 -9.60 -36.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211577040.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.731 kcal (2) G-P(sol) polarization free energy of solvation -26.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds