Wall clock time and date at job start Mon Mar 30 2020 07:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99795 * 2 1 4 4 H 1.48503 * 109.47015 * 269.99753 * 3 2 1 5 5 H 1.48499 * 109.47141 * 29.99454 * 3 2 1 6 6 H 1.48499 * 109.47000 * 149.99785 * 3 2 1 7 7 C 1.37869 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00270 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00092 * 180.02562 * 7 2 1 10 10 H 1.09004 * 109.50163 * 59.94417 * 9 7 2 11 11 C 1.53047 * 109.48556 * 299.89413 * 9 7 2 12 12 N 1.46958 * 109.36101 * 181.63196 * 11 9 7 13 13 C 1.46956 * 110.88210 * 59.31822 * 12 11 9 14 14 C 1.53043 * 109.36405 * 300.67727 * 13 12 11 15 15 N 1.46956 * 109.49027 * 180.02562 * 9 7 2 16 16 C 1.39748 * 110.99881 * 303.15578 * 15 9 7 17 17 C 1.38883 * 120.08161 * 348.27909 * 16 15 9 18 18 C 1.38116 * 119.94196 * 179.97438 * 17 16 15 19 19 C 1.38292 * 120.09167 * 359.97438 * 18 17 16 20 20 C 1.38271 * 120.15618 * 359.97438 * 19 18 17 21 21 C 1.38213 * 120.06424 * 0.02562 * 20 19 18 22 22 Cl 1.73596 * 120.04549 * 179.97438 * 21 20 19 23 23 H 0.97001 * 120.00030 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.49236 * 61.66199 * 11 9 7 25 25 H 1.09003 * 109.50836 * 301.60794 * 11 9 7 26 26 H 1.00907 * 110.99853 * 295.44633 * 12 11 9 27 27 H 1.09005 * 109.48764 * 180.70985 * 13 12 11 28 28 H 1.08996 * 109.50913 * 60.66113 * 13 12 11 29 29 H 1.08997 * 109.49403 * 298.43367 * 14 13 12 30 30 H 1.09004 * 109.51034 * 178.38064 * 14 13 12 31 31 H 1.08006 * 120.02448 * 0.02562 * 17 16 15 32 32 H 1.07994 * 119.95442 * 179.97438 * 18 17 16 33 33 H 1.07998 * 119.92174 * 180.27774 * 19 18 17 34 34 H 1.08003 * 119.96976 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 1 3.8751 -0.6792 0.8905 11 6 4.0226 -0.4752 -1.2497 12 7 5.4916 -0.5110 -1.2662 13 6 5.9819 -1.8963 -1.2657 14 6 5.4709 -2.6150 -0.0149 15 7 4.0018 -2.5794 0.0010 16 6 3.4958 -3.2898 1.0929 17 6 2.8523 -2.6169 2.1234 18 6 2.3529 -3.3219 3.2010 19 6 2.4922 -4.6967 3.2547 20 6 3.1312 -5.3708 2.2304 21 6 3.6335 -4.6717 1.1491 22 17 4.4363 -5.5183 -0.1363 23 1 -0.4850 0.8401 -0.0004 24 1 3.6841 0.5608 -1.2376 25 1 3.6367 -0.9734 -2.1391 26 1 5.8747 0.0085 -0.4906 27 1 7.0720 -1.8963 -1.2653 28 1 5.6187 -2.4113 -2.1550 29 1 5.8568 -2.1165 0.8742 30 1 5.8093 -3.6511 -0.0265 31 1 2.7419 -1.5433 2.0818 32 1 1.8528 -2.7988 4.0026 33 1 2.0966 -5.2458 4.0964 34 1 3.2380 -6.4446 2.2753 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211577123.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:54 Heat of formation + Delta-G solvation = 47.573292 kcal Electronic energy + Delta-G solvation = -18793.501896 eV Core-core repulsion = 15945.622786 eV Total energy + Delta-G solvation = -2847.879109 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.92926 -37.65016 -35.93465 -33.95541 -33.10125 -30.76548 -29.96959 -28.89530 -26.00763 -24.06316 -22.71914 -21.45572 -21.25890 -19.51427 -17.25669 -16.91541 -15.93979 -15.28662 -14.75310 -14.50209 -14.21929 -13.97626 -13.81604 -13.38208 -13.13123 -12.83943 -12.43386 -12.30731 -11.57230 -11.48596 -11.22034 -11.10693 -10.94503 -10.81301 -10.56685 -10.31643 -10.19671 -9.61189 -9.57372 -8.94799 -8.78665 -8.25073 -7.88408 -7.21071 -6.23510 -4.22389 1.71021 1.85772 2.67018 3.14277 3.20435 3.25919 4.12844 4.21131 4.36586 4.78397 5.05207 5.27571 5.38682 5.49825 5.54552 5.68932 5.70470 5.86089 5.94694 6.04279 6.12092 6.18962 6.31808 6.34866 6.41845 6.66266 6.80802 6.93025 6.98886 7.15104 7.29574 7.51607 7.67280 7.78722 7.94002 8.40700 8.85146 9.33590 10.88240 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.018872 B = 0.009558 C = 0.007121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.360444 B = 2928.865035 C = 3930.952036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.076 3.924 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.293 1.293 6 H -0.269 1.269 7 C -0.508 4.508 8 H 0.085 0.915 9 C 0.151 3.849 10 H 0.009 0.991 11 C 0.055 3.945 12 N -0.695 5.695 13 C 0.064 3.936 14 C 0.012 3.988 15 N -0.471 5.471 16 C 0.141 3.859 17 C -0.114 4.114 18 C -0.107 4.107 19 C -0.142 4.142 20 C -0.109 4.109 21 C -0.057 4.057 22 Cl -0.078 7.078 23 H 0.267 0.733 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.330 0.670 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.030 0.970 30 H 0.086 0.914 31 H 0.153 0.847 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.453 -6.098 4.122 11.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.128 4.128 3 Si 0.707 3.293 4 H -0.199 1.199 5 H -0.220 1.220 6 H -0.195 1.195 7 C -0.546 4.546 8 H 0.103 0.897 9 C 0.043 3.957 10 H 0.026 0.974 11 C -0.074 4.074 12 N -0.323 5.323 13 C -0.066 4.066 14 C -0.115 4.115 15 N -0.187 5.187 16 C 0.042 3.958 17 C -0.134 4.134 18 C -0.126 4.126 19 C -0.161 4.161 20 C -0.129 4.129 21 C -0.086 4.086 22 Cl -0.049 7.049 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.102 0.898 26 H 0.146 0.854 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.048 0.952 30 H 0.104 0.896 31 H 0.170 0.830 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.279 -6.153 2.782 11.476 hybrid contribution 0.229 0.926 1.372 1.671 sum 9.508 -5.226 4.153 11.618 Atomic orbital electron populations 1.69863 1.06066 1.27143 1.49159 1.24884 0.94750 0.98527 0.94611 0.87027 0.79660 0.84129 0.78472 1.19899 1.21984 1.19463 1.20854 0.87276 0.95156 1.51362 0.89686 1.20563 0.97684 0.83405 0.94029 0.97412 1.22627 0.84857 0.99892 1.00035 1.60845 1.09752 1.12657 1.49024 1.22031 0.98629 0.88701 0.97231 1.23019 0.87363 1.02613 0.98505 1.59172 1.06474 1.16183 1.36844 1.18614 0.97324 0.90534 0.89280 1.21846 0.98178 1.02372 0.91045 1.21097 0.99117 0.94038 0.98318 1.20872 1.01794 0.94562 0.98876 1.20710 0.99582 0.99389 0.93185 1.20564 1.04839 0.90895 0.92266 1.98295 1.78429 1.77151 1.51035 0.92280 0.91631 0.89833 0.85388 0.90883 0.90119 0.95187 0.89622 0.83003 0.86202 0.86226 0.85897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.60 13.96 55.43 0.77 -24.83 16 2 C 0.08 2.04 5.45 -17.82 -0.10 1.94 16 3 Si 0.88 20.38 24.36 -169.99 -4.14 16.24 16 4 H -0.27 -6.28 6.88 56.52 0.39 -5.89 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -5.93 6.53 56.52 0.37 -5.56 16 7 C -0.51 -13.31 6.63 -34.44 -0.23 -13.54 16 8 H 0.09 2.54 7.31 -52.49 -0.38 2.16 16 9 C 0.15 3.37 0.99 -68.81 -0.07 3.30 16 10 H 0.01 0.19 6.10 -51.93 -0.32 -0.12 16 11 C 0.05 1.16 5.47 -3.77 -0.02 1.14 16 12 N -0.70 -12.33 6.91 -113.64 -0.79 -13.12 16 13 C 0.06 1.02 6.72 -3.77 -0.03 0.99 16 14 C 0.01 0.21 5.24 -3.77 -0.02 0.19 16 15 N -0.47 -9.61 4.19 -164.70 -0.69 -10.30 16 16 C 0.14 2.84 4.67 -83.73 -0.39 2.45 16 17 C -0.11 -2.29 7.76 -39.39 -0.31 -2.60 16 18 C -0.11 -1.83 10.04 -39.61 -0.40 -2.23 16 19 C -0.14 -2.17 10.04 -39.55 -0.40 -2.57 16 20 C -0.11 -1.73 9.82 -39.58 -0.39 -2.12 16 21 C -0.06 -1.02 6.15 -39.31 -0.24 -1.26 16 22 Cl -0.08 -1.27 26.07 -51.86 -1.35 -2.62 16 23 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 24 H 0.07 1.45 3.33 -51.93 -0.17 1.27 16 25 H 0.08 1.87 8.14 -51.93 -0.42 1.45 16 26 H 0.33 5.47 8.89 -39.29 -0.35 5.12 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 1.37 5.58 -51.93 -0.29 1.08 16 31 H 0.15 3.35 5.14 -52.48 -0.27 3.08 16 32 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 34 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 276.39 15.07 4.17 4.17 Total: -1.00 -28.06 276.39 -8.53 -36.59 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -3.92 Total: 8.18 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -2.58 Total: -14.31 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: -0.70 Total: -48.24 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.14 Total: 16.24 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -1.35 Total: -2.62 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.06 -8.53 -36.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211577123.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.162 kcal (2) G-P(sol) polarization free energy of solvation -28.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds