Wall clock time and date at job start Mon Mar 30 2020 07:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99795 * 2 1 4 4 H 1.48503 * 109.47015 * 269.99753 * 3 2 1 5 5 H 1.48499 * 109.47141 * 29.99454 * 3 2 1 6 6 H 1.48499 * 109.47000 * 149.99785 * 3 2 1 7 7 C 1.37869 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00270 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00092 * 180.02562 * 7 2 1 10 10 H 1.09004 * 109.50163 * 59.94417 * 9 7 2 11 11 C 1.53047 * 109.48556 * 299.89413 * 9 7 2 12 12 N 1.46958 * 109.36101 * 181.63196 * 11 9 7 13 13 C 1.46956 * 110.88210 * 59.31822 * 12 11 9 14 14 C 1.53043 * 109.36405 * 300.67727 * 13 12 11 15 15 N 1.46956 * 109.49027 * 180.02562 * 9 7 2 16 16 C 1.39748 * 110.99881 * 303.15578 * 15 9 7 17 17 C 1.38883 * 120.08161 * 348.27909 * 16 15 9 18 18 C 1.38116 * 119.94196 * 179.97438 * 17 16 15 19 19 C 1.38292 * 120.09167 * 359.97438 * 18 17 16 20 20 C 1.38271 * 120.15618 * 359.97438 * 19 18 17 21 21 C 1.38213 * 120.06424 * 0.02562 * 20 19 18 22 22 Cl 1.73596 * 120.04549 * 179.97438 * 21 20 19 23 23 H 0.97001 * 120.00030 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.49236 * 61.66199 * 11 9 7 25 25 H 1.09003 * 109.50836 * 301.60794 * 11 9 7 26 26 H 1.00907 * 110.99853 * 295.44633 * 12 11 9 27 27 H 1.09005 * 109.48764 * 180.70985 * 13 12 11 28 28 H 1.08996 * 109.50913 * 60.66113 * 13 12 11 29 29 H 1.08997 * 109.49403 * 298.43367 * 14 13 12 30 30 H 1.09004 * 109.51034 * 178.38064 * 14 13 12 31 31 H 1.08006 * 120.02448 * 0.02562 * 17 16 15 32 32 H 1.07994 * 119.95442 * 179.97438 * 18 17 16 33 33 H 1.07998 * 119.92174 * 180.27774 * 19 18 17 34 34 H 1.08003 * 119.96976 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 1 3.8751 -0.6792 0.8905 11 6 4.0226 -0.4752 -1.2497 12 7 5.4916 -0.5110 -1.2662 13 6 5.9819 -1.8963 -1.2657 14 6 5.4709 -2.6150 -0.0149 15 7 4.0018 -2.5794 0.0010 16 6 3.4958 -3.2898 1.0929 17 6 2.8523 -2.6169 2.1234 18 6 2.3529 -3.3219 3.2010 19 6 2.4922 -4.6967 3.2547 20 6 3.1312 -5.3708 2.2304 21 6 3.6335 -4.6717 1.1491 22 17 4.4363 -5.5183 -0.1363 23 1 -0.4850 0.8401 -0.0004 24 1 3.6841 0.5608 -1.2376 25 1 3.6367 -0.9734 -2.1391 26 1 5.8747 0.0085 -0.4906 27 1 7.0720 -1.8963 -1.2653 28 1 5.6187 -2.4113 -2.1550 29 1 5.8568 -2.1165 0.8742 30 1 5.8093 -3.6511 -0.0265 31 1 2.7419 -1.5433 2.0818 32 1 1.8528 -2.7988 4.0026 33 1 2.0966 -5.2458 4.0964 34 1 3.2380 -6.4446 2.2753 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211577123.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:53 Heat of formation + Delta-G solvation = 27.457785 kcal Electronic energy + Delta-G solvation = -18794.374169 eV Core-core repulsion = 15945.622786 eV Total energy + Delta-G solvation = -2848.751383 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.41859 -39.06911 -37.27066 -35.43805 -34.99486 -32.46980 -31.38065 -30.31325 -27.71203 -25.62551 -24.34952 -22.87709 -22.67742 -21.09501 -19.03095 -18.60245 -17.37223 -16.78676 -16.21637 -16.20038 -15.76865 -15.50582 -15.22708 -14.93617 -14.55849 -14.51854 -14.02211 -13.72527 -13.22050 -12.93852 -12.79358 -12.61384 -12.44580 -12.29831 -12.11099 -11.98293 -11.64877 -11.49789 -11.26516 -10.83227 -10.40199 -9.62963 -9.40429 -8.69386 -8.32002 -6.33977 0.33425 0.49047 1.28652 1.30230 1.31294 1.39281 2.24694 2.73871 2.88716 3.01093 3.34896 3.97311 4.10051 4.15424 4.20148 4.26254 4.36318 4.38892 4.46032 4.57078 4.68843 4.70015 4.79220 5.01550 5.03091 5.16746 5.30564 5.35022 5.46079 5.63725 5.89075 5.91685 5.95671 6.36723 6.41677 6.50099 6.69722 7.25068 8.83561 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.018872 B = 0.009558 C = 0.007121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.360444 B = 2928.865035 C = 3930.952036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.023 3.977 3 Si 0.939 3.061 4 H -0.266 1.266 5 H -0.295 1.295 6 H -0.249 1.249 7 C -0.495 4.495 8 H 0.036 0.964 9 C 0.161 3.839 10 H 0.004 0.996 11 C 0.062 3.938 12 N -0.688 5.688 13 C 0.066 3.934 14 C 0.013 3.987 15 N -0.484 5.484 16 C 0.115 3.885 17 C -0.144 4.144 18 C -0.112 4.112 19 C -0.131 4.131 20 C -0.103 4.103 21 C -0.070 4.070 22 Cl -0.066 7.066 23 H 0.267 0.733 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.341 0.659 27 H 0.112 0.888 28 H 0.073 0.927 29 H 0.033 0.967 30 H 0.097 0.903 31 H 0.122 0.878 32 H 0.136 0.864 33 H 0.161 0.839 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.616 -6.985 4.853 14.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.176 4.176 3 Si 0.766 3.234 4 H -0.192 1.192 5 H -0.223 1.223 6 H -0.173 1.173 7 C -0.534 4.534 8 H 0.054 0.946 9 C 0.053 3.947 10 H 0.021 0.979 11 C -0.067 4.067 12 N -0.316 5.316 13 C -0.063 4.063 14 C -0.113 4.113 15 N -0.200 5.200 16 C 0.017 3.983 17 C -0.165 4.165 18 C -0.131 4.131 19 C -0.150 4.150 20 C -0.122 4.122 21 C -0.099 4.099 22 Cl -0.037 7.037 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.158 0.842 27 H 0.130 0.870 28 H 0.091 0.909 29 H 0.052 0.948 30 H 0.115 0.885 31 H 0.140 0.860 32 H 0.154 0.846 33 H 0.178 0.822 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 11.484 -7.061 3.518 13.933 hybrid contribution -0.449 1.009 1.201 1.631 sum 11.035 -6.052 4.719 13.441 Atomic orbital electron populations 1.70011 1.07938 1.28012 1.51689 1.25623 0.95358 1.02108 0.94470 0.86022 0.79064 0.79504 0.78857 1.19169 1.22287 1.17338 1.20851 0.89479 0.93083 1.49947 0.94615 1.20308 0.94958 0.85169 0.94305 0.97910 1.22345 0.87237 0.98806 0.98358 1.60809 1.07192 1.14094 1.49507 1.22155 1.00743 0.87202 0.96221 1.23127 0.85361 1.03616 0.99224 1.59196 1.08493 1.14741 1.37595 1.18814 0.98411 0.91655 0.89443 1.21707 1.00533 1.01250 0.93037 1.21373 0.98569 0.95306 0.97820 1.21305 1.00292 0.93702 0.99700 1.21158 0.97975 1.00961 0.92116 1.20755 1.05366 0.90370 0.93364 1.98290 1.78160 1.76563 1.50684 0.92347 0.92394 0.91606 0.84206 0.86988 0.90868 0.94833 0.88466 0.86050 0.84578 0.82193 0.82693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.59 13.96 21.44 0.30 -56.29 16 2 C 0.02 1.29 5.45 84.65 0.46 1.75 16 3 Si 0.94 42.76 24.36 68.60 1.67 44.43 16 4 H -0.27 -11.75 6.88 99.48 0.68 -11.07 16 5 H -0.30 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.25 -10.42 6.53 99.48 0.65 -9.77 16 7 C -0.49 -27.06 6.63 25.60 0.17 -26.89 16 8 H 0.04 2.27 7.31 -2.91 -0.02 2.25 16 9 C 0.16 7.28 0.99 44.18 0.04 7.32 16 10 H 0.00 0.16 6.10 -2.39 -0.01 0.15 16 11 C 0.06 2.60 5.47 86.31 0.47 3.07 16 12 N -0.69 -22.93 6.91 -513.45 -3.55 -26.48 16 13 C 0.07 1.93 6.72 86.31 0.58 2.51 16 14 C 0.01 0.43 5.24 86.31 0.45 0.89 16 15 N -0.48 -19.77 4.19 -674.98 -2.83 -22.60 16 16 C 0.12 4.65 4.67 38.21 0.18 4.83 16 17 C -0.14 -5.95 7.76 22.40 0.17 -5.78 16 18 C -0.11 -3.77 10.04 22.25 0.22 -3.54 16 19 C -0.13 -3.65 10.04 22.29 0.22 -3.43 16 20 C -0.10 -2.99 9.82 22.27 0.22 -2.77 16 21 C -0.07 -2.42 6.15 22.44 0.14 -2.29 16 22 Cl -0.07 -2.04 26.07 -2.72 -0.07 -2.11 16 23 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 24 H 0.06 2.50 3.33 -2.39 -0.01 2.49 16 25 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 26 H 0.34 10.34 8.89 -89.69 -0.80 9.55 16 27 H 0.11 2.45 8.14 -2.38 -0.02 2.43 16 28 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.03 1.06 8.14 -2.39 -0.02 1.05 16 30 H 0.10 2.91 5.58 -2.38 -0.01 2.90 16 31 H 0.12 5.65 5.14 -2.91 -0.01 5.63 16 32 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 33 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 34 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -63.52 276.39 -0.89 -64.41 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: 0.25 Total: 22.95 kcal Atomic # 6 Polarization: -27.65 SS G_CDS: 3.34 Total: -24.32 kcal Atomic # 7 Polarization: -99.29 SS G_CDS: -6.08 Total: -105.37 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 1.67 Total: 44.43 kcal Atomic # 17 Polarization: -2.04 SS G_CDS: -0.07 Total: -2.11 kcal Total: -63.52 -0.89 -64.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211577123.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.871 kcal (2) G-P(sol) polarization free energy of solvation -63.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds