Wall clock time and date at job start Mon Mar 30 2020 07:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99448 * 2 1 4 4 H 1.48498 * 109.47056 * 274.98818 * 3 2 1 5 5 H 1.48500 * 109.47280 * 34.98893 * 3 2 1 6 6 H 1.48506 * 109.47183 * 154.99331 * 3 2 1 7 7 C 1.37874 * 120.00390 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99840 * 189.35462 * 7 2 1 9 9 C 1.50694 * 120.00336 * 9.35661 * 7 2 1 10 10 H 1.09009 * 109.48774 * 305.44668 * 9 7 2 11 11 C 1.53057 * 109.48944 * 65.48381 * 9 7 2 12 12 N 1.46957 * 109.36285 * 178.36799 * 11 9 7 13 13 C 1.46948 * 110.88381 * 300.68015 * 12 11 9 14 14 C 1.53061 * 109.36353 * 59.32599 * 13 12 11 15 15 N 1.46954 * 109.49380 * 185.37716 * 9 7 2 16 16 C 1.39676 * 110.99618 * 56.84692 * 15 9 7 17 17 C 1.38944 * 120.06564 * 236.94889 * 16 15 9 18 18 C 1.38085 * 119.95186 * 179.97438 * 17 16 15 19 19 C 1.38287 * 120.08935 * 0.02562 * 18 17 16 20 20 C 1.38390 * 120.13376 * 359.97430 * 19 18 17 21 21 Cl 1.73598 * 119.97577 * 180.02562 * 20 19 18 22 22 C 1.38244 * 120.04758 * 359.74824 * 20 19 18 23 23 H 0.96995 * 120.00817 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.49145 * 298.34248 * 11 9 7 25 25 H 1.09008 * 109.48437 * 58.40476 * 11 9 7 26 26 H 1.00897 * 110.99589 * 64.55399 * 12 11 9 27 27 H 1.08993 * 109.49307 * 299.35732 * 13 12 11 28 28 H 1.09003 * 109.50509 * 179.29571 * 13 12 11 29 29 H 1.08991 * 109.49122 * 181.63177 * 14 13 12 30 30 H 1.08994 * 109.48945 * 61.55982 * 14 13 12 31 31 H 1.07999 * 120.02359 * 359.95035 * 17 16 15 32 32 H 1.08000 * 119.95877 * 179.97438 * 18 17 16 33 33 H 1.07994 * 119.93215 * 179.97438 * 19 18 17 34 34 H 1.07998 * 120.04277 * 180.27787 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.3910 2.1074 -1.3948 5 1 1.5031 2.6200 0.8028 6 1 3.5954 1.4123 0.5919 7 6 2.0046 -1.1940 -0.0005 8 1 3.0739 -1.2002 0.1515 9 6 1.2663 -2.4903 -0.2133 10 1 0.4575 -2.5717 0.5131 11 6 0.6859 -2.5210 -1.6292 12 7 0.0001 -3.8024 -1.8470 13 6 0.9281 -4.9289 -1.6763 14 6 1.5085 -4.8982 -0.2603 15 7 2.1943 -3.6169 -0.0426 16 6 2.7994 -3.5807 1.2158 17 6 4.1844 -3.5477 1.3215 18 6 4.7801 -3.5114 2.5668 19 6 4.0001 -3.5083 3.7086 20 6 2.6202 -3.5410 3.6075 21 17 1.6450 -3.5363 5.0436 22 6 2.0179 -3.5717 2.3636 23 1 -0.4851 0.8399 -0.0004 24 1 -0.0247 -1.7032 -1.7487 25 1 1.4918 -2.4119 -2.3550 26 1 -0.7969 -3.8945 -1.2351 27 1 1.7368 -4.8471 -2.4026 28 1 0.3944 -5.8667 -1.8303 29 1 2.2191 -5.7160 -0.1408 30 1 0.7026 -5.0073 0.4654 31 1 4.7946 -3.5509 0.4305 32 1 5.8567 -3.4862 2.6491 33 1 4.4686 -3.4803 4.6812 34 1 0.9410 -3.5927 2.2847 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211577225.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:23 Heat of formation + Delta-G solvation = 31.085739 kcal Electronic energy + Delta-G solvation = -18457.763441 eV Core-core repulsion = 15609.169378 eV Total energy + Delta-G solvation = -2848.594063 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.67751 -37.61954 -36.06107 -33.63226 -33.00957 -30.29677 -29.81467 -28.93273 -25.64083 -23.96014 -22.35898 -21.96229 -21.18851 -19.39872 -17.16998 -16.39514 -15.60225 -15.11652 -14.82366 -14.53443 -13.98704 -13.83444 -13.78347 -13.39220 -12.94261 -12.84426 -12.29450 -12.06947 -11.38030 -11.20288 -11.10238 -11.01638 -10.91988 -10.69825 -10.62092 -10.53335 -10.22212 -9.96174 -9.47183 -8.58374 -8.40598 -8.12451 -7.77158 -7.47955 -6.15428 -4.15257 1.63417 1.71604 2.47875 3.26560 3.33999 3.37500 4.07295 4.32163 4.56195 5.08436 5.20374 5.21442 5.36846 5.58338 5.67071 5.70308 5.80429 5.83788 5.95576 6.14868 6.16499 6.41206 6.58011 6.60018 6.67103 6.72808 6.86770 7.02181 7.16420 7.47277 7.62160 7.72557 7.91295 8.09643 8.15699 8.39167 8.89766 9.48450 10.93758 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.013707 B = 0.009036 C = 0.006870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.255421 B = 3097.880127 C = 4074.446318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.067 3.933 3 Si 0.893 3.107 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.507 4.507 8 H 0.064 0.936 9 C 0.189 3.811 10 H 0.012 0.988 11 C 0.070 3.930 12 N -0.697 5.697 13 C 0.064 3.936 14 C 0.022 3.978 15 N -0.503 5.503 16 C 0.157 3.843 17 C -0.100 4.100 18 C -0.108 4.108 19 C -0.133 4.133 20 C -0.023 4.023 21 Cl -0.089 7.089 22 C -0.129 4.129 23 H 0.263 0.737 24 H 0.092 0.908 25 H 0.061 0.939 26 H 0.330 0.670 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.026 0.974 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.708 -8.651 3.892 10.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.721 3.279 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.546 4.546 8 H 0.082 0.918 9 C 0.083 3.917 10 H 0.030 0.970 11 C -0.059 4.059 12 N -0.325 5.325 13 C -0.067 4.067 14 C -0.107 4.107 15 N -0.226 5.226 16 C 0.062 3.938 17 C -0.119 4.119 18 C -0.127 4.127 19 C -0.152 4.152 20 C -0.051 4.051 21 Cl -0.061 7.061 22 C -0.150 4.150 23 H 0.073 0.927 24 H 0.110 0.890 25 H 0.079 0.921 26 H 0.146 0.854 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.045 0.955 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.865 -8.452 2.914 10.178 hybrid contribution -0.222 1.039 1.832 2.117 sum 4.643 -7.413 4.746 9.952 Atomic orbital electron populations 1.69931 1.05909 1.27008 1.49856 1.24886 0.94796 0.99195 0.94734 0.86543 0.80029 0.83244 0.78085 1.20493 1.21301 1.19793 1.20952 0.94463 0.89575 1.49579 0.91830 1.20061 0.89935 0.87240 0.94431 0.97037 1.22259 0.97850 0.89232 0.96580 1.60909 1.09853 1.03404 1.58300 1.22006 0.95972 0.94274 0.94409 1.22861 0.96994 0.92158 0.98674 1.60065 1.34650 1.03296 1.24594 1.18641 0.92702 0.94157 0.88309 1.21122 0.93869 0.99483 0.97406 1.20906 0.99407 1.00574 0.91789 1.20844 0.91393 1.03734 0.99210 1.20736 0.91475 1.05820 0.87026 1.98331 1.71595 1.97128 1.39023 1.21558 1.00851 1.01342 0.91243 0.92729 0.88987 0.92092 0.85383 0.90666 0.91509 0.91571 0.95546 0.85365 0.85600 0.85828 0.85805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.53 12.16 55.43 0.67 -23.85 16 2 C 0.07 1.78 5.22 -17.82 -0.09 1.69 16 3 Si 0.89 21.12 29.55 -169.99 -5.02 16.09 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.51 -13.34 7.90 -34.44 -0.27 -13.61 16 8 H 0.06 1.72 7.32 -52.48 -0.38 1.34 16 9 C 0.19 4.47 1.48 -68.81 -0.10 4.36 16 10 H 0.01 0.32 7.03 -51.92 -0.36 -0.05 16 11 C 0.07 1.58 5.82 -3.76 -0.02 1.56 16 12 N -0.70 -13.22 6.91 -113.63 -0.79 -14.01 16 13 C 0.06 1.05 6.72 -3.77 -0.03 1.03 16 14 C 0.02 0.38 5.39 -3.76 -0.02 0.36 16 15 N -0.50 -10.28 4.50 -164.73 -0.74 -11.02 16 16 C 0.16 3.08 3.50 -83.79 -0.29 2.78 16 17 C -0.10 -1.74 9.85 -39.38 -0.39 -2.12 16 18 C -0.11 -1.63 10.04 -39.62 -0.40 -2.02 16 19 C -0.13 -2.06 9.83 -39.51 -0.39 -2.45 16 20 C -0.02 -0.41 6.32 -39.52 -0.25 -0.66 16 21 Cl -0.09 -1.43 28.95 -51.86 -1.50 -2.93 16 22 C -0.13 -2.52 8.45 -39.35 -0.33 -2.85 16 23 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 24 H 0.09 2.30 6.95 -51.93 -0.36 1.94 16 25 H 0.06 1.42 8.14 -51.92 -0.42 1.00 16 26 H 0.33 6.10 8.89 -39.29 -0.35 5.75 16 27 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 30 H 0.03 0.47 7.64 -51.93 -0.40 0.07 16 31 H 0.13 2.10 8.06 -52.49 -0.42 1.67 16 32 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.12 2.56 7.06 -52.49 -0.37 2.19 16 LS Contribution 293.81 15.07 4.43 4.43 Total: -1.00 -27.21 293.81 -9.85 -37.06 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -4.32 Total: 6.17 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -2.58 Total: -11.94 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: -0.85 Total: -48.88 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -1.50 Total: -2.93 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.21 -9.85 -37.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211577225.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.147 kcal (2) G-P(sol) polarization free energy of solvation -27.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds