Wall clock time and date at job start Mon Mar 30 2020 07:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99448 * 2 1 4 4 H 1.48498 * 109.47056 * 274.98818 * 3 2 1 5 5 H 1.48500 * 109.47280 * 34.98893 * 3 2 1 6 6 H 1.48506 * 109.47183 * 154.99331 * 3 2 1 7 7 C 1.37874 * 120.00390 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99840 * 189.35462 * 7 2 1 9 9 C 1.50694 * 120.00336 * 9.35661 * 7 2 1 10 10 H 1.09009 * 109.48774 * 305.44668 * 9 7 2 11 11 C 1.53057 * 109.48944 * 65.48381 * 9 7 2 12 12 N 1.46957 * 109.36285 * 178.36799 * 11 9 7 13 13 C 1.46948 * 110.88381 * 300.68015 * 12 11 9 14 14 C 1.53061 * 109.36353 * 59.32599 * 13 12 11 15 15 N 1.46954 * 109.49380 * 185.37716 * 9 7 2 16 16 C 1.39676 * 110.99618 * 56.84692 * 15 9 7 17 17 C 1.38944 * 120.06564 * 236.94889 * 16 15 9 18 18 C 1.38085 * 119.95186 * 179.97438 * 17 16 15 19 19 C 1.38287 * 120.08935 * 0.02562 * 18 17 16 20 20 C 1.38390 * 120.13376 * 359.97430 * 19 18 17 21 21 Cl 1.73598 * 119.97577 * 180.02562 * 20 19 18 22 22 C 1.38244 * 120.04758 * 359.74824 * 20 19 18 23 23 H 0.96995 * 120.00817 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.49145 * 298.34248 * 11 9 7 25 25 H 1.09008 * 109.48437 * 58.40476 * 11 9 7 26 26 H 1.00897 * 110.99589 * 64.55399 * 12 11 9 27 27 H 1.08993 * 109.49307 * 299.35732 * 13 12 11 28 28 H 1.09003 * 109.50509 * 179.29571 * 13 12 11 29 29 H 1.08991 * 109.49122 * 181.63177 * 14 13 12 30 30 H 1.08994 * 109.48945 * 61.55982 * 14 13 12 31 31 H 1.07999 * 120.02359 * 359.95035 * 17 16 15 32 32 H 1.08000 * 119.95877 * 179.97438 * 18 17 16 33 33 H 1.07994 * 119.93215 * 179.97438 * 19 18 17 34 34 H 1.07998 * 120.04277 * 180.27787 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.3910 2.1074 -1.3948 5 1 1.5031 2.6200 0.8028 6 1 3.5954 1.4123 0.5919 7 6 2.0046 -1.1940 -0.0005 8 1 3.0739 -1.2002 0.1515 9 6 1.2663 -2.4903 -0.2133 10 1 0.4575 -2.5717 0.5131 11 6 0.6859 -2.5210 -1.6292 12 7 0.0001 -3.8024 -1.8470 13 6 0.9281 -4.9289 -1.6763 14 6 1.5085 -4.8982 -0.2603 15 7 2.1943 -3.6169 -0.0426 16 6 2.7994 -3.5807 1.2158 17 6 4.1844 -3.5477 1.3215 18 6 4.7801 -3.5114 2.5668 19 6 4.0001 -3.5083 3.7086 20 6 2.6202 -3.5410 3.6075 21 17 1.6450 -3.5363 5.0436 22 6 2.0179 -3.5717 2.3636 23 1 -0.4851 0.8399 -0.0004 24 1 -0.0247 -1.7032 -1.7487 25 1 1.4918 -2.4119 -2.3550 26 1 -0.7969 -3.8945 -1.2351 27 1 1.7368 -4.8471 -2.4026 28 1 0.3944 -5.8667 -1.8303 29 1 2.2191 -5.7160 -0.1408 30 1 0.7026 -5.0073 0.4654 31 1 4.7946 -3.5509 0.4305 32 1 5.8567 -3.4862 2.6491 33 1 4.4686 -3.4803 4.6812 34 1 0.9410 -3.5927 2.2847 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211577225.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:22 Heat of formation + Delta-G solvation = 13.647902 kcal Electronic energy + Delta-G solvation = -18458.519602 eV Core-core repulsion = 15609.169378 eV Total energy + Delta-G solvation = -2849.350225 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.15648 -39.07113 -37.38578 -35.18011 -34.90633 -31.64152 -31.54432 -30.36424 -27.44868 -25.60757 -23.81108 -23.54053 -22.61117 -21.00910 -18.74660 -18.18674 -17.13200 -16.61546 -16.49472 -15.94501 -15.64357 -15.40057 -15.33549 -14.79123 -14.55805 -14.22883 -13.86220 -13.74050 -12.90109 -12.76167 -12.66594 -12.54978 -12.50766 -12.29527 -12.15434 -12.12782 -11.92067 -11.72142 -11.30156 -10.60407 -9.76177 -9.53453 -9.37629 -9.10763 -8.19372 -6.24489 0.28325 0.37262 1.15362 1.38262 1.40416 1.49333 2.38731 2.72453 3.04083 3.12619 3.56837 3.92531 4.10429 4.19918 4.29678 4.34968 4.45832 4.51305 4.57365 4.73666 4.80220 4.85475 4.91551 5.09657 5.12976 5.26574 5.41851 5.47602 5.64179 5.68455 5.81211 5.97259 6.15392 6.43838 6.52879 6.61986 6.89260 7.41888 8.89060 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.013707 B = 0.009036 C = 0.006870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.255421 B = 3097.880127 C = 4074.446318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.022 3.978 3 Si 0.948 3.052 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.270 1.270 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.202 3.798 10 H -0.027 1.027 11 C 0.084 3.916 12 N -0.694 5.694 13 C 0.066 3.934 14 C 0.023 3.977 15 N -0.506 5.506 16 C 0.129 3.871 17 C -0.109 4.109 18 C -0.094 4.094 19 C -0.127 4.127 20 C -0.035 4.035 21 Cl -0.081 7.081 22 C -0.150 4.150 23 H 0.262 0.738 24 H 0.061 0.939 25 H 0.052 0.948 26 H 0.333 0.667 27 H 0.076 0.924 28 H 0.103 0.897 29 H 0.089 0.911 30 H 0.018 0.982 31 H 0.137 0.863 32 H 0.169 0.831 33 H 0.156 0.844 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.787 -9.421 4.375 12.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.178 4.178 3 Si 0.774 3.226 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.195 1.195 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.095 3.905 10 H -0.010 1.010 11 C -0.046 4.046 12 N -0.321 5.321 13 C -0.064 4.064 14 C -0.105 4.105 15 N -0.228 5.228 16 C 0.034 3.966 17 C -0.128 4.128 18 C -0.112 4.112 19 C -0.145 4.145 20 C -0.062 4.062 21 Cl -0.052 7.052 22 C -0.171 4.171 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.149 0.851 27 H 0.095 0.905 28 H 0.121 0.879 29 H 0.108 0.892 30 H 0.036 0.964 31 H 0.155 0.845 32 H 0.186 0.814 33 H 0.173 0.827 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.954 -9.247 3.398 12.058 hybrid contribution -0.839 1.196 1.757 2.285 sum 6.115 -8.050 5.154 11.348 Atomic orbital electron populations 1.70041 1.07060 1.27473 1.50939 1.25567 0.95475 1.02042 0.94726 0.85687 0.78874 0.79809 0.78232 1.19807 1.21320 1.19450 1.21161 0.94054 0.90974 1.49024 0.92787 1.19727 0.89177 0.87859 0.93727 1.00956 1.21877 0.96813 0.90248 0.95642 1.60860 1.10198 1.02795 1.58235 1.22141 0.95871 0.94544 0.93794 1.22945 0.97243 0.91480 0.98882 1.60034 1.33762 1.03444 1.25551 1.18862 0.93805 0.96071 0.87834 1.21347 0.92887 0.99507 0.99042 1.21367 1.01450 0.97985 0.90406 1.21266 0.90379 1.01892 1.00984 1.20922 0.92649 1.05918 0.86682 1.98328 1.71685 1.97087 1.38148 1.21417 0.99632 1.03494 0.92564 0.92873 0.92046 0.92976 0.85123 0.90548 0.87933 0.89232 0.96381 0.84465 0.81386 0.82673 0.88449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.12 12.16 21.45 0.26 -51.85 16 2 C 0.02 1.19 5.22 84.65 0.44 1.63 16 3 Si 0.95 43.60 29.55 68.60 2.03 45.63 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 5 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.51 -27.57 7.90 25.60 0.20 -27.37 16 8 H 0.05 2.95 7.32 -2.91 -0.02 2.93 16 9 C 0.20 9.85 1.48 44.18 0.07 9.91 16 10 H -0.03 -1.51 7.03 -2.38 -0.02 -1.53 16 11 C 0.08 3.91 5.82 86.31 0.50 4.42 16 12 N -0.69 -26.33 6.91 -513.42 -3.55 -29.88 16 13 C 0.07 2.08 6.72 86.31 0.58 2.66 16 14 C 0.02 0.77 5.39 86.31 0.46 1.23 16 15 N -0.51 -20.76 4.50 -675.09 -3.04 -23.80 16 16 C 0.13 5.04 3.50 38.21 0.13 5.17 16 17 C -0.11 -3.59 9.85 22.40 0.22 -3.37 16 18 C -0.09 -2.50 10.04 22.24 0.22 -2.27 16 19 C -0.13 -3.55 9.83 22.32 0.22 -3.33 16 20 C -0.03 -1.18 6.32 22.31 0.14 -1.04 16 21 Cl -0.08 -2.54 28.95 -2.72 -0.08 -2.62 16 22 C -0.15 -5.95 8.45 22.42 0.19 -5.76 16 23 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 24 H 0.06 3.21 6.95 -2.39 -0.02 3.19 16 25 H 0.05 2.47 8.14 -2.38 -0.02 2.45 16 26 H 0.33 12.45 8.89 -89.70 -0.80 11.66 16 27 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.09 2.63 8.13 -2.39 -0.02 2.61 16 30 H 0.02 0.64 7.64 -2.39 -0.02 0.63 16 31 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 32 H 0.17 3.06 8.06 -2.91 -0.02 3.03 16 33 H 0.16 3.36 8.06 -2.91 -0.02 3.33 16 34 H 0.10 4.28 7.06 -2.91 -0.02 4.26 16 Total: -1.00 -60.12 293.81 -0.68 -60.80 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.31 Total: 19.84 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: 3.38 Total: -18.12 kcal Atomic # 7 Polarization: -99.20 SS G_CDS: -6.33 Total: -105.53 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 17 Polarization: -2.54 SS G_CDS: -0.08 Total: -2.62 kcal Total: -60.12 -0.68 -60.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211577225.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.446 kcal (2) G-P(sol) polarization free energy of solvation -60.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds