Wall clock time and date at job start Mon Mar 30 2020 07:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99932 * 2 1 4 4 H 1.48498 * 109.46913 * 240.00242 * 3 2 1 5 5 H 1.48508 * 109.46878 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47242 * 119.99954 * 3 2 1 7 7 C 1.37870 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00208 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00248 * 359.97438 * 7 2 1 10 10 H 1.08993 * 109.50199 * 59.94710 * 9 7 2 11 11 C 1.53050 * 109.48505 * 299.89236 * 9 7 2 12 12 N 1.46963 * 109.36399 * 181.62721 * 11 9 7 13 13 C 1.46959 * 110.87395 * 59.32165 * 12 11 9 14 14 C 1.53050 * 109.36750 * 300.68042 * 13 12 11 15 15 N 1.46951 * 109.36488 * 58.40434 * 14 13 12 16 16 C 1.39675 * 110.99982 * 176.81488 * 15 14 13 17 17 C 1.38945 * 120.06527 * 243.67545 * 16 15 14 18 18 C 1.38089 * 119.94995 * 179.97438 * 17 16 15 19 19 C 1.38291 * 120.08768 * 359.97093 * 18 17 16 20 20 C 1.38380 * 120.13470 * 0.02756 * 19 18 17 21 21 Cl 1.73597 * 119.97289 * 180.02562 * 20 19 18 22 22 C 1.38241 * 120.05230 * 359.74419 * 20 19 18 23 23 H 0.96995 * 120.00424 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.49243 * 301.59885 * 11 9 7 25 25 H 1.08998 * 109.48830 * 61.66738 * 11 9 7 26 26 H 1.00888 * 111.00094 * 183.18567 * 12 11 9 27 27 H 1.09007 * 109.48400 * 180.71336 * 13 12 11 28 28 H 1.08997 * 109.50739 * 60.66066 * 13 12 11 29 29 H 1.09006 * 109.48742 * 298.43214 * 14 13 12 30 30 H 1.09004 * 109.50538 * 178.38400 * 14 13 12 31 31 H 1.08004 * 120.02116 * 359.97438 * 17 16 15 32 32 H 1.07999 * 119.95543 * 180.02562 * 18 17 16 33 33 H 1.07994 * 119.92866 * 180.02562 * 19 18 17 34 34 H 1.07999 * 120.04602 * 180.27776 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6232 -2.5569 -0.8896 11 6 0.3736 -2.5821 1.2507 12 7 -0.3300 -3.8722 1.2678 13 6 0.6247 -4.9894 1.2672 14 6 1.5023 -4.9064 0.0160 15 7 2.2058 -3.6164 -0.0010 16 6 3.0727 -3.5334 -1.0930 17 6 4.4427 -3.4266 -0.8876 18 6 5.2977 -3.3453 -1.9690 19 6 4.7922 -3.3706 -3.2559 20 6 3.4283 -3.4769 -3.4646 21 17 2.7983 -3.5090 -5.0819 22 6 2.5676 -3.5635 -2.3863 23 1 -0.4850 0.8400 0.0004 24 1 0.9986 -2.4969 2.1396 25 1 -0.3545 -1.7710 1.2386 26 1 -0.9562 -3.9321 2.0565 27 1 0.0797 -5.9335 1.2672 28 1 1.2526 -4.9320 2.1562 29 1 0.8772 -4.9916 -0.8729 30 1 2.2303 -5.7176 0.0276 31 1 4.8386 -3.4072 0.1170 32 1 6.3626 -3.2626 -1.8094 33 1 5.4632 -3.3072 -4.0997 34 1 1.5036 -3.6510 -2.5493 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211577305.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:25 Heat of formation + Delta-G solvation = 34.424327 kcal Electronic energy + Delta-G solvation = -18426.753634 eV Core-core repulsion = 15578.304343 eV Total energy + Delta-G solvation = -2848.449291 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.57480 -37.47452 -36.02778 -33.68225 -33.01610 -30.26589 -29.68450 -29.01438 -25.66531 -24.12653 -22.26923 -21.95007 -21.07782 -18.76921 -17.21276 -16.43989 -15.52856 -15.00549 -14.92184 -14.67898 -14.04091 -13.77024 -13.64287 -13.35628 -12.95417 -12.81828 -12.37239 -11.98439 -11.51945 -11.13836 -11.06476 -10.98259 -10.91202 -10.73288 -10.56951 -10.28479 -10.21464 -9.84084 -9.10457 -8.56325 -8.37802 -8.06344 -7.77362 -7.44769 -6.09335 -4.14271 1.66382 1.74275 2.50104 3.29563 3.33735 3.36976 4.10449 4.34082 4.66752 5.00243 5.24090 5.27408 5.39902 5.60926 5.71795 5.79270 5.84422 5.87295 6.03166 6.17305 6.26020 6.38957 6.61641 6.69294 6.74900 6.75871 6.94245 7.12424 7.23406 7.53616 7.70956 7.77379 8.07897 8.10478 8.24846 8.46312 8.92167 9.51117 10.97334 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.013849 B = 0.008929 C = 0.006760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.389599 B = 3135.154704 C = 4141.060742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.509 4.509 8 H 0.064 0.936 9 C 0.228 3.772 10 H 0.015 0.985 11 C 0.066 3.934 12 N -0.698 5.698 13 C 0.063 3.937 14 C 0.062 3.938 15 N -0.510 5.510 16 C 0.158 3.842 17 C -0.099 4.099 18 C -0.108 4.108 19 C -0.133 4.133 20 C -0.023 4.023 21 Cl -0.090 7.090 22 C -0.133 4.133 23 H 0.263 0.737 24 H 0.015 0.985 25 H 0.110 0.890 26 H 0.327 0.673 27 H 0.065 0.935 28 H 0.029 0.971 29 H 0.036 0.964 30 H 0.064 0.936 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.601 -8.314 -2.326 10.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.548 4.548 8 H 0.082 0.918 9 C 0.124 3.876 10 H 0.032 0.968 11 C -0.063 4.063 12 N -0.328 5.328 13 C -0.067 4.067 14 C -0.065 4.065 15 N -0.232 5.232 16 C 0.063 3.937 17 C -0.118 4.118 18 C -0.127 4.127 19 C -0.152 4.152 20 C -0.050 4.050 21 Cl -0.061 7.061 22 C -0.154 4.154 23 H 0.073 0.927 24 H 0.033 0.967 25 H 0.128 0.872 26 H 0.143 0.857 27 H 0.083 0.917 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.537 -8.159 -2.699 10.223 hybrid contribution 0.166 1.043 0.058 1.058 sum 5.704 -7.116 -2.640 9.494 Atomic orbital electron populations 1.69852 1.05805 1.26920 1.50167 1.24903 0.94887 0.99160 0.94833 0.86583 0.79579 0.82741 0.78757 1.20155 1.21230 1.20161 1.21035 0.93378 0.89406 1.50954 0.91813 1.19378 0.87812 0.86464 0.93954 0.96765 1.22344 0.97313 0.89173 0.97457 1.60726 1.20417 1.03811 1.47848 1.21868 0.93685 0.94476 0.96646 1.22107 0.95405 0.91464 0.97569 1.60122 1.21445 1.03582 1.38070 1.18640 0.92777 0.94087 0.88194 1.21137 0.92203 0.99349 0.99144 1.20907 0.99526 1.00553 0.91683 1.20839 0.92948 1.03727 0.97711 1.20735 0.93664 1.05745 0.84865 1.98330 1.87618 1.97105 1.23059 1.21616 0.99979 1.01577 0.92188 0.92674 0.96701 0.87235 0.85669 0.91696 0.95231 0.94543 0.91714 0.85374 0.85621 0.85845 0.85572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.71 11.35 55.43 0.63 -24.08 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 3 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.51 -13.61 8.05 -34.44 -0.28 -13.89 16 8 H 0.06 1.73 6.98 -52.49 -0.37 1.36 16 9 C 0.23 5.62 1.67 -68.80 -0.11 5.51 16 10 H 0.01 0.41 7.26 -51.93 -0.38 0.03 16 11 C 0.07 1.54 5.76 -3.76 -0.02 1.52 16 12 N -0.70 -13.65 6.90 -113.63 -0.78 -14.43 16 13 C 0.06 1.09 6.72 -3.77 -0.03 1.06 16 14 C 0.06 1.13 5.35 -3.77 -0.02 1.11 16 15 N -0.51 -10.76 4.50 -164.73 -0.74 -11.51 16 16 C 0.16 3.14 3.51 -83.79 -0.29 2.85 16 17 C -0.10 -1.75 9.60 -39.37 -0.38 -2.12 16 18 C -0.11 -1.63 10.04 -39.62 -0.40 -2.03 16 19 C -0.13 -2.07 9.83 -39.51 -0.39 -2.46 16 20 C -0.02 -0.40 6.32 -39.53 -0.25 -0.65 16 21 Cl -0.09 -1.43 28.95 -51.86 -1.50 -2.93 16 22 C -0.13 -2.60 8.42 -39.35 -0.33 -2.93 16 23 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 24 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.11 2.84 6.13 -51.93 -0.32 2.52 16 26 H 0.33 5.57 8.90 -39.30 -0.35 5.22 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.04 0.69 7.42 -51.93 -0.39 0.31 16 30 H 0.06 1.04 8.13 -51.93 -0.42 0.62 16 31 H 0.13 2.13 8.06 -52.48 -0.42 1.71 16 32 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 33 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.13 2.60 7.06 -52.49 -0.37 2.23 16 LS Contribution 291.91 15.07 4.40 4.40 Total: -1.00 -27.95 291.91 -9.87 -37.82 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -4.26 Total: 4.93 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -2.59 Total: -10.39 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: -0.90 Total: -50.01 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -1.50 Total: -2.93 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.95 -9.87 -37.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211577305.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.244 kcal (2) G-P(sol) polarization free energy of solvation -27.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds