Wall clock time and date at job start Mon Mar 30 2020 07:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99864 * 2 1 4 4 H 1.48497 * 109.47387 * 239.99723 * 3 2 1 5 5 H 1.48507 * 109.47091 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47185 * 119.99467 * 3 2 1 7 7 C 1.37876 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00027 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99991 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.50923 * 59.93763 * 9 7 2 11 11 C 1.53054 * 109.48754 * 299.88862 * 9 7 2 12 12 N 1.46955 * 109.36537 * 181.63475 * 11 9 7 13 13 C 1.46955 * 110.88145 * 59.31595 * 12 11 9 14 14 C 1.53044 * 109.36708 * 300.68281 * 13 12 11 15 15 N 1.46955 * 109.48780 * 180.02562 * 9 7 2 16 16 C 1.39741 * 110.99709 * 303.15005 * 15 9 7 17 17 C 1.38900 * 120.06282 * 292.24923 * 16 15 9 18 18 C 1.38115 * 119.93465 * 179.97438 * 17 16 15 19 19 C 1.38380 * 120.06408 * 359.97438 * 18 17 16 20 20 Cl 1.73594 * 119.93786 * 180.02562 * 19 18 17 21 21 C 1.38377 * 120.12272 * 0.04448 * 19 18 17 22 22 C 1.38108 * 120.06591 * 359.97438 * 21 19 18 23 23 H 0.96996 * 120.00424 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.49134 * 61.66544 * 11 9 7 25 25 H 1.09006 * 109.50663 * 301.60992 * 11 9 7 26 26 H 1.00901 * 110.99625 * 295.45390 * 12 11 9 27 27 H 1.08999 * 109.48921 * 180.71088 * 13 12 11 28 28 H 1.09003 * 109.48813 * 60.65151 * 13 12 11 29 29 H 1.08999 * 109.49153 * 298.43377 * 14 13 12 30 30 H 1.09001 * 109.50790 * 178.37639 * 14 13 12 31 31 H 1.07994 * 120.03165 * 0.25643 * 17 16 15 32 32 H 1.08000 * 119.96157 * 180.02562 * 18 17 16 33 33 H 1.07997 * 119.97046 * 179.97438 * 21 19 18 34 34 H 1.07998 * 120.03653 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6237 -2.5573 -0.8889 11 6 0.3727 -2.5816 1.2512 12 7 -0.3309 -3.8717 1.2683 13 6 0.6238 -4.9889 1.2688 14 6 1.5022 -4.9065 0.0183 15 7 2.2058 -3.6164 0.0018 16 6 3.0743 -3.5341 -1.0899 17 6 2.5908 -3.7176 -2.3790 18 6 3.4515 -3.6352 -3.4561 19 6 4.7941 -3.3695 -3.2519 20 17 5.8728 -3.2660 -4.6080 21 6 5.2785 -3.1867 -1.9686 22 6 4.4226 -3.2684 -0.8878 23 1 -0.4850 0.8400 0.0004 24 1 -0.3554 -1.7705 1.2383 25 1 0.9969 -2.4959 2.1407 26 1 -0.9719 -3.9442 0.4925 27 1 0.0788 -5.9329 1.2689 28 1 1.2511 -4.9308 2.1584 29 1 0.8778 -4.9920 -0.8710 30 1 2.2302 -5.7176 0.0308 31 1 1.5422 -3.9200 -2.5393 32 1 3.0760 -3.7774 -4.4587 33 1 6.3268 -2.9799 -1.8120 34 1 4.8012 -3.1260 0.1136 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211577487.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:59 Heat of formation + Delta-G solvation = 31.948906 kcal Electronic energy + Delta-G solvation = -18353.423183 eV Core-core repulsion = 15504.866550 eV Total energy + Delta-G solvation = -2848.556633 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.69981 -37.65857 -36.11489 -33.52153 -33.06845 -30.69786 -29.73451 -28.69735 -25.63232 -23.92984 -22.48497 -21.94621 -21.16947 -19.38326 -17.20096 -16.44718 -15.79490 -15.12303 -14.83592 -14.33275 -14.03989 -13.85499 -13.71355 -13.18018 -12.98930 -12.93527 -12.39798 -12.09487 -11.60839 -11.28659 -11.12346 -11.00183 -10.89461 -10.64997 -10.58765 -10.54395 -10.18086 -9.94162 -9.45488 -8.64983 -8.60949 -8.02913 -7.73683 -7.45851 -6.15253 -4.18319 1.56925 1.71188 2.41011 3.27407 3.31565 3.34958 4.04079 4.30130 4.56759 5.10172 5.17521 5.20707 5.22948 5.56127 5.68734 5.73068 5.80326 5.84319 5.93808 6.10693 6.30624 6.42169 6.43826 6.58302 6.64889 6.72565 6.93092 7.04703 7.12091 7.52538 7.64444 7.75922 7.94440 8.11697 8.21657 8.38279 8.86203 9.46401 10.92034 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.015401 B = 0.008032 C = 0.005762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.668290 B = 3485.103863 C = 4858.000245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.064 3.936 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.507 4.507 8 H 0.065 0.935 9 C 0.194 3.806 10 H 0.004 0.996 11 C 0.064 3.936 12 N -0.697 5.697 13 C 0.063 3.937 14 C 0.021 3.979 15 N -0.506 5.506 16 C 0.152 3.848 17 C -0.139 4.139 18 C -0.102 4.102 19 C -0.053 4.053 20 Cl -0.092 7.092 21 C -0.107 4.107 22 C -0.088 4.088 23 H 0.264 0.736 24 H 0.110 0.890 25 H 0.058 0.942 26 H 0.329 0.671 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.026 0.974 30 H 0.065 0.935 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.428 -8.235 -3.750 10.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.546 4.546 8 H 0.083 0.917 9 C 0.088 3.912 10 H 0.021 0.979 11 C -0.065 4.065 12 N -0.324 5.324 13 C -0.068 4.068 14 C -0.108 4.108 15 N -0.229 5.229 16 C 0.058 3.942 17 C -0.159 4.159 18 C -0.121 4.121 19 C -0.079 4.079 20 Cl -0.063 7.063 21 C -0.126 4.126 22 C -0.107 4.107 23 H 0.074 0.926 24 H 0.128 0.872 25 H 0.076 0.924 26 H 0.144 0.856 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.514 -8.051 -2.696 10.124 hybrid contribution 0.392 1.007 -1.929 2.211 sum 5.906 -7.044 -4.625 10.290 Atomic orbital electron populations 1.69822 1.05857 1.27087 1.50351 1.24893 0.94910 0.99232 0.94768 0.86554 0.79556 0.82598 0.78805 1.20226 1.21214 1.20032 1.20998 0.93443 0.89228 1.50899 0.91732 1.20029 0.89141 0.87237 0.94763 0.97856 1.22374 0.97404 0.89209 0.97484 1.60944 1.18913 1.03758 1.48833 1.22012 0.93540 0.94446 0.96764 1.22863 0.97177 0.92121 0.98626 1.60062 1.20995 1.03179 1.38621 1.18846 0.92819 0.93578 0.88997 1.21570 0.99453 1.01911 0.92987 1.20768 0.91319 1.00750 0.99292 1.20737 0.91073 1.08051 0.88032 1.98322 1.65174 1.97064 1.45751 1.20879 1.00177 1.01082 0.90507 1.20989 0.92081 0.98947 0.98660 0.92602 0.87205 0.92372 0.85558 0.91629 0.90725 0.95579 0.91651 0.86113 0.85860 0.85460 0.84875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.25 11.35 55.43 0.63 -23.62 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 3 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.51 -13.24 8.05 -34.44 -0.28 -13.52 16 8 H 0.06 1.71 6.59 -52.48 -0.35 1.36 16 9 C 0.19 4.56 1.75 -68.81 -0.12 4.44 16 10 H 0.00 0.10 7.67 -51.93 -0.40 -0.30 16 11 C 0.06 1.46 5.76 -3.77 -0.02 1.44 16 12 N -0.70 -13.32 6.91 -113.64 -0.79 -14.11 16 13 C 0.06 1.04 6.72 -3.77 -0.03 1.02 16 14 C 0.02 0.36 5.25 -3.77 -0.02 0.34 16 15 N -0.51 -10.27 4.50 -164.72 -0.74 -11.01 16 16 C 0.15 2.94 3.69 -83.76 -0.31 2.63 16 17 C -0.14 -2.52 8.68 -39.38 -0.34 -2.86 16 18 C -0.10 -1.67 9.82 -39.57 -0.39 -2.06 16 19 C -0.05 -0.84 6.32 -39.48 -0.25 -1.09 16 20 Cl -0.09 -1.29 28.95 -51.86 -1.50 -2.79 16 21 C -0.11 -1.71 9.82 -39.58 -0.39 -2.10 16 22 C -0.09 -1.56 9.11 -39.38 -0.36 -1.92 16 23 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 24 H 0.11 2.79 6.13 -51.93 -0.32 2.48 16 25 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 26 H 0.33 6.05 8.89 -39.29 -0.35 5.70 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.03 0.45 7.05 -51.93 -0.37 0.08 16 30 H 0.06 1.01 8.13 -51.93 -0.42 0.59 16 31 H 0.12 2.17 7.06 -52.49 -0.37 1.80 16 32 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 33 H 0.13 1.73 8.06 -52.49 -0.42 1.30 16 34 H 0.13 2.28 8.06 -52.49 -0.42 1.85 16 LS Contribution 291.27 15.07 4.39 4.39 Total: -1.00 -26.62 291.27 -9.87 -36.49 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -4.24 Total: 6.75 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -2.60 Total: -12.07 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -0.90 Total: -48.73 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -1.50 Total: -2.79 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -26.62 -9.87 -36.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211577487.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.436 kcal (2) G-P(sol) polarization free energy of solvation -26.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds